RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 IGHV3-13P01766 116 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 IGHV3-7P01780 117 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 IGHEP01854 428 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 CBLN1P23435 193 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 CD1BP29016 333 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 MPV17P39210 176 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 RPL29P47914 159 aaKnown RBP10.32□□□□□ -0.76
NUP88-201ENST00000225696 PSG7Q13046 419 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 C6orf15Q6UXA7 325 aaPredicted RBP10.32□□□□□ -0.76
NUP88-201ENST00000225696 Q6ZWC4 215 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 C11orf53Q8IXP5 236 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 OCC1Q8TAD7 63 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 SLC25A40Q8TBP6 338 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 KCNIP1Q9NZI2 227 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 PSG11Q9UQ72 335 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 WDR83OSQ9Y284 106 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 KIR2DL5BA0A0G2JN68 375 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 KIR2DL5BA0A0G2JPC4 375 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 TMEM30CPA0ZSE6 113 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 A6NNC1 897 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 SLC17A3O00476 420 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 AQP7O14520 342 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 RAB29O14966 203 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 GABRA2P47869 451 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 TDGF1P3P51864 188 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 FOXL1Q12952 345 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 KIR2DL5AQ8N109 375 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 OR13A1Q8NGR1 328 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 Q8TCH9 128 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 C1orf159Q96HA4 380 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 TBX15Q96SF7 602 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 DIRC2Q96SL1 478 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 POLDIP2Q9Y2S7 368 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 TMEM210A6NLX4 147 aa10.31□□□□□ -0.76
NUP88-201ENST00000225696 K7EN84 100 aa10.31□□□□□ -0.76
NUP88-201ENST00000225696 PDE6DO43924 150 aa10.31□□□□□ -0.76
NUP88-201ENST00000225696 YPEL1O60688 119 aa10.31□□□□□ -0.76
NUP88-201ENST00000225696 RAB4AP20338 218 aa10.31□□□□□ -0.76
NUP88-201ENST00000225696 CDKN1AP38936 164 aa10.31□□□□□ -0.76
NUP88-201ENST00000225696 FOXF2Q12947 444 aa10.31□□□□□ -0.76
NUP88-201ENST00000225696 MIC13Q5XKP0 118 aa10.31□□□□□ -0.76
NUP88-201ENST00000225696 TREML4Q6UXN2 200 aa10.31□□□□□ -0.76
NUP88-201ENST00000225696 Q8IYB0 196 aa10.31□□□□□ -0.76
NUP88-201ENST00000225696 YPEL2Q96QA6 119 aa10.31□□□□□ -0.76
NUP88-201ENST00000225696 FAM234AQ9H0X4 552 aa10.31□□□□□ -0.76
NUP88-201ENST00000225696 YTHDF2Q9Y5A9 579 aaKnown RBP10.31□□□□□ -0.76
NUP88-201ENST00000225696 TRAV3A0A0B4J244 114 aa10.31□□□□□ -0.76
NUP88-201ENST00000225696 ZNF705FA8MVS1 300 aaPredicted RBP10.31□□□□□ -0.76
NUP88-201ENST00000225696 ZNF705DP0CH99 300 aaPredicted RBP10.31□□□□□ -0.76
NUP88-201ENST00000225696 ZNF705BP0CI00 300 aaPredicted RBP10.31□□□□□ -0.76
NUP88-201ENST00000225696 PLGLB1Q02325 96 aa10.31□□□□□ -0.76
NUP88-201ENST00000225696 TGFBR3Q03167 851 aa10.31□□□□□ -0.76
NUP88-201ENST00000225696 CATR1Q13166 79 aa10.31□□□□□ -0.76
NUP88-201ENST00000225696 UTF1Q5T230 341 aa10.31□□□□□ -0.76
NUP88-201ENST00000225696 ABHD17BQ5VST6 288 aa10.31□□□□□ -0.76
NUP88-201ENST00000225696 SPATA31B1PQ5VZV4 182 aa10.31□□□□□ -0.76
NUP88-201ENST00000225696 MGST2Q99735 147 aa10.31□□□□□ -0.76
NUP88-201ENST00000225696 DEFB127Q9H1M4 99 aa10.31□□□□□ -0.76
NUP88-201ENST00000225696 HES4Q9HCC6 221 aa10.31□□□□□ -0.76
NUP88-201ENST00000225696 B4GALT7Q9UBV7 327 aa10.31□□□□□ -0.76
NUP88-201ENST00000225696 FZR1Q9UM11 496 aa10.31□□□□□ -0.76
NUP88-201ENST00000225696 RNF114Q9Y508 228 aa10.31□□□□□ -0.76
NUP88-201ENST00000225696 A0A1W2PPV4 95 aa10.3□□□□□ -0.76
NUP88-201ENST00000225696 C17orf112F2Z3M2 114 aa10.3□□□□□ -0.76
NUP88-201ENST00000225696 M0R143 59 aa10.3□□□□□ -0.76
NUP88-201ENST00000225696 WISP2O76076 250 aa10.3□□□□□ -0.76
NUP88-201ENST00000225696 HPRT1P00492 218 aa10.3□□□□□ -0.76
NUP88-201ENST00000225696 CD99P14209 185 aa10.3□□□□□ -0.76
NUP88-201ENST00000225696 TBC1D28Q2M2D7 210 aa10.3□□□□□ -0.76
NUP88-201ENST00000225696 PRAMEF6Q5VXH4 476 aa10.3□□□□□ -0.76
NUP88-201ENST00000225696 FBXW9Q5XUX1 488 aa10.3□□□□□ -0.76
NUP88-201ENST00000225696 ABHD12Q8N2K0 398 aa10.3□□□□□ -0.76
NUP88-201ENST00000225696 ZBTB34Q8NCN2 500 aa10.3□□□□□ -0.76
NUP88-201ENST00000225696 SSMEM1Q8WWF3 244 aa10.3□□□□□ -0.76
NUP88-201ENST00000225696 ZCCHC14Q8WYQ9 949 aaKnown RBP10.3□□□□□ -0.76
NUP88-201ENST00000225696 MS4A5Q9H3V2 200 aa10.3□□□□□ -0.76
NUP88-201ENST00000225696 KCNIP2Q9NS61 270 aa10.3□□□□□ -0.76
NUP88-201ENST00000225696 FOXJ2Q9P0K8 574 aa10.3□□□□□ -0.76
NUP88-201ENST00000225696 A0A1W2PNU3 283 aaPredicted RBP10.29□□□□□ -0.76
NUP88-201ENST00000225696 OOEPA6NGQ2 149 aa10.29□□□□□ -0.76
NUP88-201ENST00000225696 F6UZH7 168 aa10.29□□□□□ -0.76
NUP88-201ENST00000225696 FOXH1O75593 365 aa10.29□□□□□ -0.76
NUP88-201ENST00000225696 ZNF25P17030 456 aaPredicted RBP10.29□□□□□ -0.76
NUP88-201ENST00000225696 TIMP3P35625 211 aa10.29□□□□□ -0.76
NUP88-201ENST00000225696 LPAL2Q16609 132 aa10.29□□□□□ -0.76
NUP88-201ENST00000225696 ZNF705AQ6ZN79 300 aaPredicted RBP10.29□□□□□ -0.76
NUP88-201ENST00000225696 NINJ1Q92982 152 aa10.29□□□□□ -0.76
NUP88-201ENST00000225696 R3HDM4Q96D70 268 aa10.29□□□□□ -0.76
NUP88-201ENST00000225696 CIB3Q96Q77 187 aaPredicted RBP10.29□□□□□ -0.76
NUP88-201ENST00000225696 ZDHHC11Q9H8X9 412 aa10.29□□□□□ -0.76
NUP88-201ENST00000225696 SEPSECSQ9HD40 501 aaKnown RBP10.29□□□□□ -0.76
NUP88-201ENST00000225696 OBP2BQ9NPH6 170 aa10.29□□□□□ -0.76
NUP88-201ENST00000225696 FCGR3BO75015 233 aa10.29□□□□□ -0.76
NUP88-201ENST00000225696 SERF1AO75920 110 aa10.29□□□□□ -0.76
NUP88-201ENST00000225696 LYZL6O75951 148 aa10.29□□□□□ -0.76
NUP88-201ENST00000225696 OR10J1P30954 320 aa10.29□□□□□ -0.76
NUP88-201ENST00000225696 RNFT1Q5M7Z0 435 aa10.29□□□□□ -0.76
NUP88-201ENST00000225696 TPTE2P1Q5T6R2 138 aa10.29□□□□□ -0.76
NUP88-201ENST00000225696 TOMM20LQ6UXN7 152 aa10.29□□□□□ -0.76
NUP88-201ENST00000225696 CMTM2Q8TAZ6 248 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms