RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 CD2BP2O95400 341 aaKnown RBP22.02■■□□□ 1.12
CLN3-254ENST00000637050 SLC4A3P48751 1232 aa22.02■■□□□ 1.12
CLN3-254ENST00000637050 ADGRA1Q86SQ6 560 aa22.02■■□□□ 1.12
CLN3-254ENST00000637050 HSCBQ8IWL3 235 aa22.02■■□□□ 1.12
CLN3-254ENST00000637050 DAXXQ9UER7 740 aaPredicted RBP22.02■■□□□ 1.12
CLN3-254ENST00000637050 MBD4O95243 580 aa22.01■■□□□ 1.11
CLN3-254ENST00000637050 TM6SF1Q9BZW5 370 aa22.01■■□□□ 1.11
CLN3-254ENST00000637050 PIM2Q9P1W9 311 aa22.01■■□□□ 1.11
CLN3-254ENST00000637050 CCDC88AQ3V6T2 1871 aa22.01■■□□□ 1.11
CLN3-254ENST00000637050 ST18O60284 1047 aa22.01■■□□□ 1.11
CLN3-254ENST00000637050 LDHBP07195 334 aaKnown RBP22.01■■□□□ 1.11
CLN3-254ENST00000637050 CYP21A2P08686 494 aa22.01■■□□□ 1.11
CLN3-254ENST00000637050 NEK4P51957 841 aa22.01■■□□□ 1.11
CLN3-254ENST00000637050 CCDC93Q567U6 631 aa22.01■■□□□ 1.11
CLN3-254ENST00000637050 SUPT20HQ8NEM7 779 aa22.01■■□□□ 1.11
CLN3-254ENST00000637050 ADCK5Q3MIX3 580 aa22■■□□□ 1.11
CLN3-254ENST00000637050 ILDR2Q71H61 639 aa22■■□□□ 1.11
CLN3-254ENST00000637050 RTKN2Q8IZC4 609 aa22■■□□□ 1.11
CLN3-254ENST00000637050 TBC1D22AQ8WUA7 517 aa22■■□□□ 1.11
CLN3-254ENST00000637050 ARMT1Q9H993 441 aa22■■□□□ 1.11
CLN3-254ENST00000637050 CTNNA3Q9UI47 895 aa22■■□□□ 1.11
CLN3-254ENST00000637050 TAF6LQ9Y6J9 622 aa22■■□□□ 1.11
CLN3-254ENST00000637050 RPAP1Q9BWH6 1393 aaPredicted RBP21.99■■□□□ 1.11
CLN3-254ENST00000637050 CHD4Q14839 1912 aa21.99■■□□□ 1.11
CLN3-254ENST00000637050 FGAP02671 866 aa21.99■■□□□ 1.11
CLN3-254ENST00000637050 DOK7Q18PE1 504 aa21.99■■□□□ 1.11
CLN3-254ENST00000637050 LCORLQ8N3X6 602 aa21.99■■□□□ 1.11
CLN3-254ENST00000637050 MIGA1Q8NAN2 632 aa21.99■■□□□ 1.11
CLN3-254ENST00000637050 RIOK1Q9BRS2 568 aaKnown RBP21.99■■□□□ 1.11
CLN3-254ENST00000637050 BRCA1P38398 1863 aaKnown RBP21.99■■□□□ 1.11
CLN3-254ENST00000637050 MAGEB6P1A0A0J9YX57 407 aa21.98■■□□□ 1.11
CLN3-254ENST00000637050 GNAT2P19087 354 aa21.98■■□□□ 1.11
CLN3-254ENST00000637050 PODNQ7Z5L7 613 aa21.98■■□□□ 1.11
CLN3-254ENST00000637050 DZIP1Q86YF9 867 aaKnown RBP21.98■■□□□ 1.11
CLN3-254ENST00000637050 JAKMIP1Q96N16 626 aaKnown RBP21.98■■□□□ 1.11
CLN3-254ENST00000637050 PSMD1Q99460 953 aa21.98■■□□□ 1.11
CLN3-254ENST00000637050 UPF3BQ9BZI7 483 aaKnown RBP21.98■■□□□ 1.11
CLN3-254ENST00000637050 PATL2C9JE40 543 aaKnown RBP21.98■■□□□ 1.11
CLN3-254ENST00000637050 GTF2IP78347 998 aa21.98■■□□□ 1.11
CLN3-254ENST00000637050 KIAA2012Q0VF49 1180 aa21.98■■□□□ 1.11
CLN3-254ENST00000637050 KRT32Q14532 448 aa21.98■■□□□ 1.11
CLN3-254ENST00000637050 ALX1Q15699 326 aa21.98■■□□□ 1.11
CLN3-254ENST00000637050 GRIK5Q16478 980 aa21.98■■□□□ 1.11
CLN3-254ENST00000637050 MFSD14BQ5SR56 506 aa21.98■■□□□ 1.11
CLN3-254ENST00000637050 SOGA3Q5TF21 947 aa21.98■■□□□ 1.11
CLN3-254ENST00000637050 ZSWIM6Q9HCJ5 1215 aa21.98■■□□□ 1.11
CLN3-254ENST00000637050 G3V3G9 751 aa21.97■■□□□ 1.11
CLN3-254ENST00000637050 PSMA5P28066 241 aa21.97■■□□□ 1.11
CLN3-254ENST00000637050 DCAF8Q5TAQ9 597 aa21.97■■□□□ 1.11
CLN3-254ENST00000637050 TTLL5Q6EMB2 1281 aa21.97■■□□□ 1.11
CLN3-254ENST00000637050 PPP1R1BQ9UD71 204 aaPredicted RBP21.97■■□□□ 1.11
CLN3-254ENST00000637050 ZMYM6O95789 1325 aa21.97■■□□□ 1.11
CLN3-254ENST00000637050 K7ELQ4 463 aaPredicted RBP21.96■■□□□ 1.11
CLN3-254ENST00000637050 CASTP20810 708 aaKnown RBP21.96■■□□□ 1.11
CLN3-254ENST00000637050 GSTO1P78417 241 aa21.96■■□□□ 1.11
CLN3-254ENST00000637050 DALRD3Q5D0E6 543 aaKnown RBP21.96■■□□□ 1.11
CLN3-254ENST00000637050 DBNDD1Q9H9R9 158 aa21.96■■□□□ 1.11
CLN3-254ENST00000637050 GSG1L2A8MUP6 293 aa21.95■■□□□ 1.1
CLN3-254ENST00000637050 TTC14Q96N46 770 aa21.95■■□□□ 1.1
CLN3-254ENST00000637050 SUGT1Q9Y2Z0 365 aa21.95■■□□□ 1.1
CLN3-254ENST00000637050 APPP05067 770 aa21.95■■□□□ 1.1
CLN3-254ENST00000637050 AOC3Q16853 763 aa21.95■■□□□ 1.1
CLN3-254ENST00000637050 IMMTQ16891 758 aaKnown RBP21.95■■□□□ 1.1
CLN3-254ENST00000637050 RUFY3Q7L099 469 aa21.95■■□□□ 1.1
CLN3-254ENST00000637050 SPON1Q9HCB6 807 aa21.95■■□□□ 1.1
CLN3-254ENST00000637050 EPB41L4AQ9HCS5 686 aaPredicted RBP21.95■■□□□ 1.1
CLN3-254ENST00000637050 CYP46A1Q9Y6A2 500 aa21.95■■□□□ 1.1
CLN3-254ENST00000637050 SLC4A4Q9Y6R1 1079 aa21.95■■□□□ 1.1
CLN3-254ENST00000637050 PRKAB2O43741 272 aa21.94■■□□□ 1.1
CLN3-254ENST00000637050 ECE2O60344 883 aa21.94■■□□□ 1.1
CLN3-254ENST00000637050 MCM2P49736 904 aa21.94■■□□□ 1.1
CLN3-254ENST00000637050 DYNLL1P63167 89 aaKnown RBP21.94■■□□□ 1.1
CLN3-254ENST00000637050 IFNL3Q8IZI9 196 aa21.94■■□□□ 1.1
CLN3-254ENST00000637050 LDHCP07864 332 aa21.93■■□□□ 1.1
CLN3-254ENST00000637050 STOX1Q6ZVD7 989 aa21.93■■□□□ 1.1
CLN3-254ENST00000637050 KLHL34Q8N239 644 aa21.93■■□□□ 1.1
CLN3-254ENST00000637050 VPS33BQ9H267 617 aa21.93■■□□□ 1.1
CLN3-254ENST00000637050 PPIP5K2O43314 1243 aa21.92■■□□□ 1.1
CLN3-254ENST00000637050 CPA1P15085 419 aa21.92■■□□□ 1.1
CLN3-254ENST00000637050 BLOC1S2Q6QNY1 142 aa21.92■■□□□ 1.1
CLN3-254ENST00000637050 CERS5Q8N5B7 392 aa21.92■■□□□ 1.1
CLN3-254ENST00000637050 NEK1Q96PY6 1258 aa21.92■■□□□ 1.1
CLN3-254ENST00000637050 NACAP1Q9BZK3 213 aa21.92■■□□□ 1.1
CLN3-254ENST00000637050 AATFQ9NY61 560 aaKnown RBP eCLIP21.92■■□□□ 1.1
CLN3-254ENST00000637050 MROH7-TTC4A0A0A0MT08 1334 aa21.92■■□□□ 1.1
CLN3-254ENST00000637050 E7EWF7 191 aa21.91■■□□□ 1.1
CLN3-254ENST00000637050 ZNF213O14771 459 aa21.91■■□□□ 1.1
CLN3-254ENST00000637050 FKBP1AP62942 108 aaKnown RBP21.91■■□□□ 1.1
CLN3-254ENST00000637050 DIXDC1Q155Q3 683 aa21.91■■□□□ 1.1
CLN3-254ENST00000637050 FAM163AQ96GL9 167 aaPredicted RBP21.91■■□□□ 1.1
CLN3-254ENST00000637050 NAPBQ9H115 298 aa21.91■■□□□ 1.1
CLN3-254ENST00000637050 ZNF646O15015 1829 aaPredicted RBP21.91■■□□□ 1.1
CLN3-254ENST00000637050 LAMA4Q16363 1823 aa21.91■■□□□ 1.1
CLN3-254ENST00000637050 PPP4CP60510 307 aa21.91■■□□□ 1.1
CLN3-254ENST00000637050 COL9A3Q14050 684 aaPredicted RBP21.91■■□□□ 1.1
CLN3-254ENST00000637050 STRIP1Q5VSL9 837 aa21.91■■□□□ 1.1
CLN3-254ENST00000637050 FBXW7Q969H0 707 aa21.91■■□□□ 1.1
CLN3-254ENST00000637050 KCNQ5Q9NR82 932 aa21.91■■□□□ 1.1
CLN3-254ENST00000637050 RPS6KB1P23443 525 aa21.9■■□□□ 1.1
CLN3-254ENST00000637050 HAND2P61296 217 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms