RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	C3orf58	Q8NDZ4	430 aa		5.43	□□□□□ -1.54
CNOT1-223	ENST00000628857	SLC7A3	Q8WY07	619 aa		5.43	□□□□□ -1.54
CNOT1-223	ENST00000628857	CARD10	Q9BWT7	1032 aa		5.43	□□□□□ -1.54
CNOT1-223	ENST00000628857	TMPRSS13	Q9BYE2	586 aa		5.43	□□□□□ -1.54
CNOT1-223	ENST00000628857	OSBPL7	Q9BZF2	842 aa		5.43	□□□□□ -1.54
CNOT1-223	ENST00000628857	CEP44	Q9C0F1	390 aa		5.43	□□□□□ -1.54
CNOT1-223	ENST00000628857	TMEM39A	Q9NV64	488 aa		5.43	□□□□□ -1.54
CNOT1-223	ENST00000628857	WWC3	Q9ULE0	1092 aa		5.43	□□□□□ -1.54
CNOT1-223	ENST00000628857	AK5	Q9Y6K8	562 aa		5.43	□□□□□ -1.54
CNOT1-223	ENST00000628857	LOC100289279	A0A1B0GTE1	492 aa		5.42	□□□□□ -1.54
CNOT1-223	ENST00000628857	FCGRT	P55899	365 aa		5.42	□□□□□ -1.54
CNOT1-223	ENST00000628857	DAB2	P98082	770 aa		5.42	□□□□□ -1.54
CNOT1-223	ENST00000628857	GSTM4	Q03013	218 aa		5.42	□□□□□ -1.54
CNOT1-223	ENST00000628857	ACAD11	Q709F0	780 aa		5.42	□□□□□ -1.54
CNOT1-223	ENST00000628857	TPSG1	Q9NRR2	321 aa		5.42	□□□□□ -1.54
CNOT1-223	ENST00000628857	DDX3Y	O15523	660 aa	Known RBP	5.41	□□□□□ -1.54
CNOT1-223	ENST00000628857	EIF4B	P23588	611 aa	Known RBP	5.41	□□□□□ -1.54
CNOT1-223	ENST00000628857	NLRP12	P59046	1061 aa		5.41	□□□□□ -1.54
CNOT1-223	ENST00000628857	FAAP100	Q0VG06	881 aa		5.41	□□□□□ -1.54
CNOT1-223	ENST00000628857	POU4F3	Q15319	338 aa		5.41	□□□□□ -1.54
CNOT1-223	ENST00000628857	HGSNAT	Q68CP4	663 aa		5.41	□□□□□ -1.54
CNOT1-223	ENST00000628857	TMC4	Q7Z404	712 aa		5.41	□□□□□ -1.54
CNOT1-223	ENST00000628857	FAM46A	Q96IP4	442 aa	Known RBP	5.41	□□□□□ -1.54
CNOT1-223	ENST00000628857	RUSC1	Q9BVN2	902 aa		5.41	□□□□□ -1.54
CNOT1-223	ENST00000628857	CYP4F12	Q9HCS2	524 aa		5.41	□□□□□ -1.54
CNOT1-223	ENST00000628857	KRT82	Q9NSB4	513 aa		5.41	□□□□□ -1.54
CNOT1-223	ENST00000628857	HIF3A	Q9Y2N7	669 aa		5.41	□□□□□ -1.54
CNOT1-223	ENST00000628857	WISP1	O95388	367 aa		5.4	□□□□□ -1.54
CNOT1-223	ENST00000628857	RSPO4	Q2I0M5	234 aa	Predicted RBP	5.4	□□□□□ -1.54
CNOT1-223	ENST00000628857	NUTM2G	Q5VZR2	741 aa		5.4	□□□□□ -1.54
CNOT1-223	ENST00000628857	UBASH3B	Q8TF42	649 aa		5.4	□□□□□ -1.54
CNOT1-223	ENST00000628857	MEGF10	Q96KG7	1140 aa		5.4	□□□□□ -1.54
CNOT1-223	ENST00000628857	NECAB3	Q96P71	396 aa	Predicted RBP	5.4	□□□□□ -1.54
CNOT1-223	ENST00000628857	DUSP9	Q99956	384 aa	Known RBP	5.4	□□□□□ -1.54
CNOT1-223	ENST00000628857	CORO1B	Q9BR76	489 aa		5.4	□□□□□ -1.54
CNOT1-223	ENST00000628857	TRIM56	Q9BRZ2	755 aa	Known RBP	5.4	□□□□□ -1.54
CNOT1-223	ENST00000628857	EMILIN2	Q9BXX0	1053 aa		5.4	□□□□□ -1.54
CNOT1-223	ENST00000628857	SAMM50	Q9Y512	469 aa		5.4	□□□□□ -1.54
CNOT1-223	ENST00000628857	TIAF1	O95411	115 aa		5.39	□□□□□ -1.55
CNOT1-223	ENST00000628857	NME2	P22392	152 aa		5.39	□□□□□ -1.55
CNOT1-223	ENST00000628857	MAOB	P27338	520 aa		5.39	□□□□□ -1.55
CNOT1-223	ENST00000628857	DOC2B	Q14184	412 aa		5.39	□□□□□ -1.55
CNOT1-223	ENST00000628857	ZNF326	Q5BKZ1	582 aa	Known RBP	5.39	□□□□□ -1.55
CNOT1-223	ENST00000628857	SV2B	Q7L1I2	683 aa		5.39	□□□□□ -1.55
CNOT1-223	ENST00000628857	UBL7	Q96S82	380 aa	Predicted RBP	5.39	□□□□□ -1.55
CNOT1-223	ENST00000628857	SETDB2	Q96T68	719 aa		5.39	□□□□□ -1.55
CNOT1-223	ENST00000628857	BCL11A	Q9H165	835 aa		5.39	□□□□□ -1.55
CNOT1-223	ENST00000628857	CACNA2D2	Q9NY47	1150 aa		5.39	□□□□□ -1.55
CNOT1-223	ENST00000628857	PARP2	Q9UGN5	583 aa		5.39	□□□□□ -1.55
CNOT1-223	ENST00000628857	AKAP2	Q9Y2D5	859 aa		5.39	□□□□□ -1.55
CNOT1-223	ENST00000628857	ALX3	O95076	343 aa		5.38	□□□□□ -1.55
CNOT1-223	ENST00000628857	USP17L7	P0C7H9	530 aa		5.38	□□□□□ -1.55
CNOT1-223	ENST00000628857	ARNT	P27540	789 aa		5.38	□□□□□ -1.55
CNOT1-223	ENST00000628857	ST13	P50502	369 aa	Known RBP	5.38	□□□□□ -1.55
CNOT1-223	ENST00000628857	MFAP1	P55081	439 aa	Known RBP	5.38	□□□□□ -1.55
CNOT1-223	ENST00000628857	XPC	Q01831	940 aa	Predicted RBP	5.38	□□□□□ -1.55
CNOT1-223	ENST00000628857	FDX2	Q6P4F2	183 aa		5.38	□□□□□ -1.55
CNOT1-223	ENST00000628857	PRR23C	Q6ZRP0	262 aa		5.38	□□□□□ -1.55
CNOT1-223	ENST00000628857	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	5.38	□□□□□ -1.55
CNOT1-223	ENST00000628857	AGGF1	Q8N302	714 aa	eCLIP	5.38	□□□□□ -1.55
CNOT1-223	ENST00000628857	TP53INP1	Q96A56	240 aa		5.38	□□□□□ -1.55
CNOT1-223	ENST00000628857	GSX1	Q9H4S2	264 aa	Predicted RBP	5.38	□□□□□ -1.55
CNOT1-223	ENST00000628857	CYP8B1	Q9UNU6	501 aa		5.38	□□□□□ -1.55
CNOT1-223	ENST00000628857		K7ELQ4	463 aa	Predicted RBP	5.37	□□□□□ -1.55
CNOT1-223	ENST00000628857	GSC2	O15499	205 aa		5.37	□□□□□ -1.55
CNOT1-223	ENST00000628857	DHX15	O43143	795 aa	Known RBP	5.37	□□□□□ -1.55
CNOT1-223	ENST00000628857	ADAM23	O75077	832 aa		5.37	□□□□□ -1.55
CNOT1-223	ENST00000628857	DLGAP3	O95886	979 aa		5.37	□□□□□ -1.55
CNOT1-223	ENST00000628857	GSTP1	P09211	210 aa	Known RBP	5.37	□□□□□ -1.55
CNOT1-223	ENST00000628857	RLBP1	P12271	317 aa		5.37	□□□□□ -1.55
CNOT1-223	ENST00000628857	GLB1	P16278	677 aa		5.37	□□□□□ -1.55
CNOT1-223	ENST00000628857	SOX4	Q06945	474 aa	Predicted RBP	5.37	□□□□□ -1.55
CNOT1-223	ENST00000628857	ZNF252P-AS1	Q0IIN9	211 aa		5.37	□□□□□ -1.55
CNOT1-223	ENST00000628857	PDZD3	Q86UT5	571 aa		5.37	□□□□□ -1.55
CNOT1-223	ENST00000628857	MYRFL	Q96LU7	910 aa		5.37	□□□□□ -1.55
CNOT1-223	ENST00000628857	USP26	Q9BXU7	913 aa		5.37	□□□□□ -1.55
CNOT1-223	ENST00000628857	GPN3	Q9UHW5	284 aa	Predicted RBP	5.37	□□□□□ -1.55
CNOT1-223	ENST00000628857	USP31	Q70CQ4	1352 aa		5.37	□□□□□ -1.55
CNOT1-223	ENST00000628857	ENC1	O14682	589 aa		5.36	□□□□□ -1.55
CNOT1-223	ENST00000628857	SART1	O43290	800 aa	Known RBP	5.36	□□□□□ -1.55
CNOT1-223	ENST00000628857	DYRK3	O43781	588 aa		5.36	□□□□□ -1.55
CNOT1-223	ENST00000628857	SORBS3	O60504	671 aa		5.36	□□□□□ -1.55
CNOT1-223	ENST00000628857	SLFN14	P0C7P3	912 aa		5.36	□□□□□ -1.55
CNOT1-223	ENST00000628857	BMP6	P22004	513 aa		5.36	□□□□□ -1.55
CNOT1-223	ENST00000628857	RPS26	P62854	115 aa	Known RBP	5.36	□□□□□ -1.55
CNOT1-223	ENST00000628857	TRIM26	Q12899	539 aa	Predicted RBP	5.36	□□□□□ -1.55
CNOT1-223	ENST00000628857	PSMD2	Q13200	908 aa		5.36	□□□□□ -1.55
CNOT1-223	ENST00000628857	LRRC14	Q15048	493 aa		5.36	□□□□□ -1.55
CNOT1-223	ENST00000628857	KIF4B	Q2VIQ3	1234 aa		5.36	□□□□□ -1.55
CNOT1-223	ENST00000628857	CLEC10A	Q8IUN9	316 aa		5.36	□□□□□ -1.55
CNOT1-223	ENST00000628857	ARMC10	Q8N2F6	343 aa		5.36	□□□□□ -1.55
CNOT1-223	ENST00000628857	C12orf50	Q8NA57	414 aa	Predicted RBP	5.36	□□□□□ -1.55
CNOT1-223	ENST00000628857	NOC4L	Q9BVI4	516 aa	Known RBP	5.36	□□□□□ -1.55
CNOT1-223	ENST00000628857	BCL2L13	Q9BXK5	485 aa		5.36	□□□□□ -1.55
CNOT1-223	ENST00000628857	RAX	Q9Y2V3	346 aa		5.36	□□□□□ -1.55
CNOT1-223	ENST00000628857	TRIM37	O94972	964 aa		5.35	□□□□□ -1.55
CNOT1-223	ENST00000628857	FURIN	P09958	794 aa		5.35	□□□□□ -1.55
CNOT1-223	ENST00000628857	TAF1C	Q15572	869 aa	Predicted RBP	5.35	□□□□□ -1.55
CNOT1-223	ENST00000628857	SULF2	Q8IWU5	870 aa		5.35	□□□□□ -1.55
CNOT1-223	ENST00000628857	FAM20C	Q8IXL6	584 aa		5.35	□□□□□ -1.55

Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms