RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 TRDNQ13061 729 aa26.01■■□□□ 1.75
PNKP-220ENST00000627232 NFIXQ14938 502 aa26.01■■□□□ 1.75
PNKP-220ENST00000627232 FOXD4L6Q3SYB3 417 aaPredicted RBP26.01■■□□□ 1.75
PNKP-220ENST00000627232 FOXD4L3Q6VB84 417 aaPredicted RBP26.01■■□□□ 1.75
PNKP-220ENST00000627232 FBXO33Q7Z6M2 555 aa26.01■■□□□ 1.75
PNKP-220ENST00000627232 GAS2L3Q86XJ1 694 aa26.01■■□□□ 1.75
PNKP-220ENST00000627232 FAM84BQ96KN1 310 aaPredicted RBP26.01■■□□□ 1.75
PNKP-220ENST00000627232 NBPF3Q9H094 633 aa26.01■■□□□ 1.75
PNKP-220ENST00000627232 JAK2O60674 1132 aa26■■□□□ 1.75
PNKP-220ENST00000627232 CDC37L1Q7L3B6 337 aa26■■□□□ 1.75
PNKP-220ENST00000627232 NSUN7Q8NE18 718 aaKnown RBP26■■□□□ 1.75
PNKP-220ENST00000627232 SYAP1Q96A49 352 aaPredicted RBP26■■□□□ 1.75
PNKP-220ENST00000627232 IFNL3Q8IZI9 196 aa25.99■■□□□ 1.75
PNKP-220ENST00000627232 NSFL1CQ9UNZ2 370 aaKnown RBP25.99■■□□□ 1.75
PNKP-220ENST00000627232 COL1A1P02452 1464 aaPredicted RBP25.99■■□□□ 1.75
PNKP-220ENST00000627232 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.98■■□□□ 1.75
PNKP-220ENST00000627232 ANTXR2P58335 489 aa25.98■■□□□ 1.75
PNKP-220ENST00000627232 CHST3Q7LGC8 479 aa25.98■■□□□ 1.75
PNKP-220ENST00000627232 VPS37DQ86XT2 251 aa25.98■■□□□ 1.75
PNKP-220ENST00000627232 ARMT1Q9H993 441 aa25.98■■□□□ 1.75
PNKP-220ENST00000627232 GDPD2Q9HCC8 539 aa25.98■■□□□ 1.75
PNKP-220ENST00000627232 TMEM63CQ9P1W3 806 aa25.98■■□□□ 1.75
PNKP-220ENST00000627232 NPHP1O15259 732 aa25.98■■□□□ 1.75
PNKP-220ENST00000627232 DTNBO60941 627 aa25.98■■□□□ 1.75
PNKP-220ENST00000627232 UBE2HP62256 183 aa25.98■■□□□ 1.75
PNKP-220ENST00000627232 TBC1D10CQ8IV04 446 aa25.98■■□□□ 1.75
PNKP-220ENST00000627232 CNBD1Q8NA66 436 aa25.98■■□□□ 1.75
PNKP-220ENST00000627232 FAM184AQ8NB25 1140 aa25.98■■□□□ 1.75
PNKP-220ENST00000627232 NAPBQ9H115 298 aa25.98■■□□□ 1.75
PNKP-220ENST00000627232 CACNA1SQ13698 1873 aa25.98■■□□□ 1.75
PNKP-220ENST00000627232 SALL1Q9NSC2 1324 aa25.97■■□□□ 1.75
PNKP-220ENST00000627232 GSG1L2A8MUP6 293 aa25.97■■□□□ 1.75
PNKP-220ENST00000627232 CTDNEP1O95476 244 aa25.97■■□□□ 1.75
PNKP-220ENST00000627232 DNM1Q05193 864 aaKnown RBP25.97■■□□□ 1.75
PNKP-220ENST00000627232 NACAP1Q9BZK3 213 aa25.97■■□□□ 1.75
PNKP-220ENST00000627232 EPB41L4AQ9HCS5 686 aaPredicted RBP25.97■■□□□ 1.75
PNKP-220ENST00000627232 RBM27Q9P2N5 1060 aaKnown RBP25.97■■□□□ 1.75
PNKP-220ENST00000627232 GADD45BO75293 160 aaPredicted RBP25.96■■□□□ 1.75
PNKP-220ENST00000627232 KRT85P78386 507 aa25.96■■□□□ 1.75
PNKP-220ENST00000627232 PTPDC1A2A3K4 754 aa25.95■■□□□ 1.74
PNKP-220ENST00000627232 CYP7A1P22680 504 aa25.95■■□□□ 1.74
PNKP-220ENST00000627232 NAA16Q6N069 864 aaPredicted RBP25.95■■□□□ 1.74
PNKP-220ENST00000627232 TMED8Q6PL24 325 aaPredicted RBP25.95■■□□□ 1.74
PNKP-220ENST00000627232 CCDC24Q8N4L8 307 aa25.95■■□□□ 1.74
PNKP-220ENST00000627232 IQSEC3Q9UPP2 1182 aaPredicted RBP25.95■■□□□ 1.74
PNKP-220ENST00000627232 MAST2Q6P0Q8 1798 aa25.95■■□□□ 1.74
PNKP-220ENST00000627232 MYH15Q9Y2K3 1946 aa25.94■■□□□ 1.74
PNKP-220ENST00000627232 DHX16O60231 1041 aaKnown RBP25.94■■□□□ 1.74
PNKP-220ENST00000627232 GRAPQ13588 217 aa25.94■■□□□ 1.74
PNKP-220ENST00000627232 LCORLQ8N3X6 602 aa25.94■■□□□ 1.74
PNKP-220ENST00000627232 GRAPLQ8TC17 118 aaPredicted RBP25.94■■□□□ 1.74
PNKP-220ENST00000627232 TMEM87BQ96K49 555 aa25.94■■□□□ 1.74
PNKP-220ENST00000627232 ZSCAN16Q9H4T2 348 aaPredicted RBP25.94■■□□□ 1.74
PNKP-220ENST00000627232 RAI14Q9P0K7 980 aa25.94■■□□□ 1.74
PNKP-220ENST00000627232 WTIPA6NIX2 430 aaPredicted RBP25.93■■□□□ 1.74
PNKP-220ENST00000627232 FIBPO43427 364 aa25.93■■□□□ 1.74
PNKP-220ENST00000627232 GYS1P13807 737 aa25.93■■□□□ 1.74
PNKP-220ENST00000627232 HIBADHP31937 336 aaKnown RBP25.93■■□□□ 1.74
PNKP-220ENST00000627232 CCT2P78371 535 aaKnown RBP25.93■■□□□ 1.74
PNKP-220ENST00000627232 DDX11Q96FC9 970 aa25.93■■□□□ 1.74
PNKP-220ENST00000627232 CNNM2Q9H8M5 875 aa25.93■■□□□ 1.74
PNKP-220ENST00000627232 BRPF3Q9ULD4 1205 aa25.93■■□□□ 1.74
PNKP-220ENST00000627232 SLC4A4Q9Y6R1 1079 aa25.93■■□□□ 1.74
PNKP-220ENST00000627232 ELP1O95163 1332 aa25.93■■□□□ 1.74
PNKP-220ENST00000627232 KLF18A0A0U1RQI7 1052 aa25.93■■□□□ 1.74
PNKP-220ENST00000627232 H3BQV1 296 aa25.93■■□□□ 1.74
PNKP-220ENST00000627232 IGSF3O75054 1194 aa25.93■■□□□ 1.74
PNKP-220ENST00000627232 IFFO2Q5TF58 517 aa25.93■■□□□ 1.74
PNKP-220ENST00000627232 PRR5LQ6MZQ0 368 aa25.93■■□□□ 1.74
PNKP-220ENST00000627232 ABCF2Q9UG63 623 aa25.93■■□□□ 1.74
PNKP-220ENST00000627232 NAP1L2Q9ULW6 460 aaPredicted RBP25.93■■□□□ 1.74
PNKP-220ENST00000627232 ANGEL1Q9UNK9 670 aaKnown RBP25.93■■□□□ 1.74
PNKP-220ENST00000627232 CCDC88AQ3V6T2 1871 aa25.92■■□□□ 1.74
PNKP-220ENST00000627232 TRIM37O94972 964 aa25.92■■□□□ 1.74
PNKP-220ENST00000627232 RESTQ13127 1097 aa25.92■■□□□ 1.74
PNKP-220ENST00000627232 FERMT3Q86UX7 667 aa25.92■■□□□ 1.74
PNKP-220ENST00000627232 KRT23Q9C075 422 aa25.92■■□□□ 1.74
PNKP-220ENST00000627232 NCOA5Q9HCD5 579 aaKnown RBP25.92■■□□□ 1.74
PNKP-220ENST00000627232 GPHNQ9NQX3 736 aaPredicted RBP25.92■■□□□ 1.74
PNKP-220ENST00000627232 IRS2Q9Y4H2 1338 aa25.91■■□□□ 1.74
PNKP-220ENST00000627232 KIAA1551Q9HCM1 1747 aa25.91■■□□□ 1.74
PNKP-220ENST00000627232 MAGEB6P1A0A0J9YX57 407 aa25.91■■□□□ 1.74
PNKP-220ENST00000627232 SH2B2O14492 632 aaPredicted RBP25.91■■□□□ 1.74
PNKP-220ENST00000627232 LRSAM1Q6UWE0 723 aa25.91■■□□□ 1.74
PNKP-220ENST00000627232 CYB5R4Q7L1T6 521 aa25.91■■□□□ 1.74
PNKP-220ENST00000627232 KLHL34Q8N239 644 aa25.91■■□□□ 1.74
PNKP-220ENST00000627232 SCAND2PQ9GZW5 306 aaPredicted RBP25.91■■□□□ 1.74
PNKP-220ENST00000627232 HPS5Q9UPZ3 1129 aa25.91■■□□□ 1.74
PNKP-220ENST00000627232 LEMD3Q9Y2U8 911 aa25.91■■□□□ 1.74
PNKP-220ENST00000627232 ST5P78524 1137 aa25.9■■□□□ 1.74
PNKP-220ENST00000627232 AKNAD1Q5T1N1 836 aa25.9■■□□□ 1.74
PNKP-220ENST00000627232 STAG1Q8WVM7 1258 aa25.9■■□□□ 1.74
PNKP-220ENST00000627232 NEDD4P46934 1319 aa25.9■■□□□ 1.74
PNKP-220ENST00000627232 GOLGA8BA8MQT2 603 aa25.89■■□□□ 1.74
PNKP-220ENST00000627232 B4E1Z4 1266 aa25.89■■□□□ 1.74
PNKP-220ENST00000627232 PRKAB2O43741 272 aa25.89■■□□□ 1.74
PNKP-220ENST00000627232 TDO2P48775 406 aa25.89■■□□□ 1.74
PNKP-220ENST00000627232 MIGA1Q8NAN2 632 aa25.89■■□□□ 1.74
PNKP-220ENST00000627232 RGS22Q8NE09 1264 aa25.89■■□□□ 1.74
PNKP-220ENST00000627232 SERPINB2P05120 415 aa25.88■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms