RNA–Protein interactions for RNA: ENST00000619655.4

MMP28-207, Transcript of matrix metallopeptidase 28, humanhuman

TSL 2

Gene MMP28, Length 2,336 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-207ENST00000619655 ZNF772Q68DY9 489 aaPredicted RBP23.81■■□□□ 1.4
MMP28-207ENST00000619655 TBC1D10CQ8IV04 446 aa23.81■■□□□ 1.4
MMP28-207ENST00000619655 NCOA5Q9HCD5 579 aaKnown RBP23.81■■□□□ 1.4
MMP28-207ENST00000619655 ANKIB1Q9P2G1 1089 aa23.81■■□□□ 1.4
MMP28-207ENST00000619655 TRDNQ13061 729 aa23.8■■□□□ 1.4
MMP28-207ENST00000619655 CDC37L1Q7L3B6 337 aa23.8■■□□□ 1.4
MMP28-207ENST00000619655 FERMT3Q86UX7 667 aa23.8■■□□□ 1.4
MMP28-207ENST00000619655 AGXT2Q9BYV1 514 aa23.8■■□□□ 1.4
MMP28-207ENST00000619655 NAPBQ9H115 298 aa23.8■■□□□ 1.4
MMP28-207ENST00000619655 EPB41L4AQ9HCS5 686 aaPredicted RBP23.8■■□□□ 1.4
MMP28-207ENST00000619655 PATL2C9JE40 543 aaKnown RBP23.79■■□□□ 1.4
MMP28-207ENST00000619655 SERPINB2P05120 415 aa23.79■■□□□ 1.4
MMP28-207ENST00000619655 ADGRA1Q86SQ6 560 aa23.79■■□□□ 1.4
MMP28-207ENST00000619655 MB21D2Q8IYB1 491 aaPredicted RBP23.79■■□□□ 1.4
MMP28-207ENST00000619655 IFNL3Q8IZI9 196 aa23.79■■□□□ 1.4
MMP28-207ENST00000619655 NSFL1CQ9UNZ2 370 aaKnown RBP23.79■■□□□ 1.4
MMP28-207ENST00000619655 SLC4A4Q9Y6R1 1079 aa23.79■■□□□ 1.4
MMP28-207ENST00000619655 PFKFB2O60825 505 aa23.79■■□□□ 1.4
MMP28-207ENST00000619655 PDCP20941 246 aa23.79■■□□□ 1.4
MMP28-207ENST00000619655 RPGRQ92834 1020 aaKnown RBP23.79■■□□□ 1.4
MMP28-207ENST00000619655 JAG2Q9Y219 1238 aa23.79■■□□□ 1.4
MMP28-207ENST00000619655 ST5P78524 1137 aa23.78■■□□□ 1.4
MMP28-207ENST00000619655 GRAPQ13588 217 aa23.78■■□□□ 1.4
MMP28-207ENST00000619655 USP48Q86UV5 1035 aa23.78■■□□□ 1.4
MMP28-207ENST00000619655 GRAPLQ8TC17 118 aaPredicted RBP23.78■■□□□ 1.4
MMP28-207ENST00000619655 RBM27Q9P2N5 1060 aaKnown RBP23.78■■□□□ 1.4
MMP28-207ENST00000619655 ATP6V1DQ9Y5K8 247 aa23.78■■□□□ 1.4
MMP28-207ENST00000619655 HIBADHP31937 336 aaKnown RBP23.78■■□□□ 1.4
MMP28-207ENST00000619655 TXNRD3Q86VQ6 643 aa23.78■■□□□ 1.4
MMP28-207ENST00000619655 TDO2P48775 406 aa23.77■■□□□ 1.4
MMP28-207ENST00000619655 ANTXR2P58335 489 aa23.77■■□□□ 1.4
MMP28-207ENST00000619655 CHAF1AQ13111 956 aaPredicted RBP23.77■■□□□ 1.4
MMP28-207ENST00000619655 FBXO33Q7Z6M2 555 aa23.77■■□□□ 1.4
MMP28-207ENST00000619655 INCENPQ9NQS7 918 aa23.77■■□□□ 1.4
MMP28-207ENST00000619655 FIBPO43427 364 aa23.77■■□□□ 1.4
MMP28-207ENST00000619655 APBA3O96018 575 aa23.77■■□□□ 1.4
MMP28-207ENST00000619655 PDIA3P30101 505 aaKnown RBP23.77■■□□□ 1.4
MMP28-207ENST00000619655 CTDSPL2Q05D32 466 aa23.77■■□□□ 1.4
MMP28-207ENST00000619655 RAB11FIP4Q86YS3 637 aa23.77■■□□□ 1.4
MMP28-207ENST00000619655 STK11IPQ8N1F8 1099 aa23.77■■□□□ 1.4
MMP28-207ENST00000619655 NKX2-3Q8TAU0 364 aa23.77■■□□□ 1.4
MMP28-207ENST00000619655 GSG1L2A8MUP6 293 aa23.76■■□□□ 1.39
MMP28-207ENST00000619655 FOSBP53539 338 aa23.76■■□□□ 1.39
MMP28-207ENST00000619655 DNM1Q05193 864 aaKnown RBP23.76■■□□□ 1.39
MMP28-207ENST00000619655 FAM184AQ8NB25 1140 aa23.76■■□□□ 1.39
MMP28-207ENST00000619655 MYH13Q9UKX3 1938 aa23.76■■□□□ 1.39
MMP28-207ENST00000619655 B4E1Z4 1266 aa23.76■■□□□ 1.39
MMP28-207ENST00000619655 GADD45BO75293 160 aaPredicted RBP23.76■■□□□ 1.39
MMP28-207ENST00000619655 L1TD1Q5T7N2 865 aaKnown RBP23.75■■□□□ 1.39
MMP28-207ENST00000619655 NEDD4P46934 1319 aa23.75■■□□□ 1.39
MMP28-207ENST00000619655 KLF18A0A0U1RQI7 1052 aa23.75■■□□□ 1.39
MMP28-207ENST00000619655 FSD2A1L4K1 749 aa23.75■■□□□ 1.39
MMP28-207ENST00000619655 DDR1Q08345 913 aa23.75■■□□□ 1.39
MMP28-207ENST00000619655 NSUN7Q8NE18 718 aaKnown RBP23.75■■□□□ 1.39
MMP28-207ENST00000619655 SDR42E1Q8WUS8 393 aa23.75■■□□□ 1.39
MMP28-207ENST00000619655 NACAP1Q9BZK3 213 aa23.75■■□□□ 1.39
MMP28-207ENST00000619655 MAGEB6P1A0A0J9YX57 407 aa23.74■■□□□ 1.39
MMP28-207ENST00000619655 ZNF827Q17R98 1081 aa23.74■■□□□ 1.39
MMP28-207ENST00000619655 ZNF274Q96GC6 653 aaPredicted RBP23.74■■□□□ 1.39
MMP28-207ENST00000619655 PNPLA7Q6ZV29 1317 aa23.74■■□□□ 1.39
MMP28-207ENST00000619655 PTPDC1A2A3K4 754 aa23.73■■□□□ 1.39
MMP28-207ENST00000619655 CTDNEP1O95476 244 aa23.73■■□□□ 1.39
MMP28-207ENST00000619655 GNAT2P19087 354 aa23.73■■□□□ 1.39
MMP28-207ENST00000619655 NAA16Q6N069 864 aaPredicted RBP23.73■■□□□ 1.39
MMP28-207ENST00000619655 FAM173BQ6P4H8 233 aa23.73■■□□□ 1.39
MMP28-207ENST00000619655 CYB5R4Q7L1T6 521 aa23.73■■□□□ 1.39
MMP28-207ENST00000619655 GAS2L3Q86XJ1 694 aa23.73■■□□□ 1.39
MMP28-207ENST00000619655 GPR101Q96P66 508 aaPredicted RBP23.73■■□□□ 1.39
MMP28-207ENST00000619655 BRPF3Q9ULD4 1205 aa23.73■■□□□ 1.39
MMP28-207ENST00000619655 H3BQV1 296 aa23.73■■□□□ 1.39
MMP28-207ENST00000619655 ALX1Q15699 326 aa23.73■■□□□ 1.39
MMP28-207ENST00000619655 IFFO2Q5TF58 517 aa23.73■■□□□ 1.39
MMP28-207ENST00000619655 GOLGA8BA8MQT2 603 aa23.72■■□□□ 1.39
MMP28-207ENST00000619655 ZSCAN23Q3MJ62 389 aa23.72■■□□□ 1.39
MMP28-207ENST00000619655 LLPHQ9BRT6 129 aaKnown RBP23.72■■□□□ 1.39
MMP28-207ENST00000619655 TOMM22Q9NS69 142 aa23.72■■□□□ 1.39
MMP28-207ENST00000619655 MBD3O95983 291 aa23.72■■□□□ 1.39
MMP28-207ENST00000619655 CACNA1SQ13698 1873 aa23.71■■□□□ 1.39
MMP28-207ENST00000619655 SEMA3EO15041 775 aa23.71■■□□□ 1.39
MMP28-207ENST00000619655 DYNLL1P63167 89 aaKnown RBP23.71■■□□□ 1.39
MMP28-207ENST00000619655 RRP12Q5JTH9 1297 aaKnown RBP23.71■■□□□ 1.39
MMP28-207ENST00000619655 SMARCC2Q8TAQ2 1214 aa23.71■■□□□ 1.39
MMP28-207ENST00000619655 POLRMTO00411 1230 aaKnown RBP23.71■■□□□ 1.39
MMP28-207ENST00000619655 FBXL16Q8N461 479 aa23.71■■□□□ 1.39
MMP28-207ENST00000619655 ZNF384Q8TF68 577 aa23.71■■□□□ 1.39
MMP28-207ENST00000619655 TMEM63CQ9P1W3 806 aa23.71■■□□□ 1.39
MMP28-207ENST00000619655 ZMYM6O95789 1325 aa23.7■■□□□ 1.39
MMP28-207ENST00000619655 CHD4Q14839 1912 aa23.7■■□□□ 1.39
MMP28-207ENST00000619655 PRDX5P30044 214 aa23.7■■□□□ 1.38
MMP28-207ENST00000619655 XDHP47989 1333 aa23.7■■□□□ 1.38
MMP28-207ENST00000619655 PDIA4P13667 645 aaKnown RBP23.7■■□□□ 1.38
MMP28-207ENST00000619655 RXRBP28702 533 aa23.7■■□□□ 1.38
MMP28-207ENST00000619655 MECOMQ03112 1051 aa23.7■■□□□ 1.38
MMP28-207ENST00000619655 CRY2Q49AN0 593 aa23.7■■□□□ 1.38
MMP28-207ENST00000619655 RBM17Q96I25 401 aaKnown RBP23.7■■□□□ 1.38
MMP28-207ENST00000619655 MINDY4BA8MYZ0 360 aa23.69■■□□□ 1.38
MMP28-207ENST00000619655 XRCC6P12956 609 aaKnown RBP eCLIP23.69■■□□□ 1.38
MMP28-207ENST00000619655 MFSD6Q6ZSS7 791 aa23.69■■□□□ 1.38
MMP28-207ENST00000619655 ANGEL1Q9UNK9 670 aaKnown RBP23.69■■□□□ 1.38
MMP28-207ENST00000619655 KDM4AO75164 1064 aa23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms