RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 CYP2E1P05181 493 aaPredicted RBP16.57■□□□□ 0.24
LINC00540-202ENST00000616974 USP48Q86UV5 1035 aa16.57■□□□□ 0.24
LINC00540-202ENST00000616974 OGFOD1Q8N543 542 aa16.57■□□□□ 0.24
LINC00540-202ENST00000616974 FZD1Q9UP38 647 aa16.57■□□□□ 0.24
LINC00540-202ENST00000616974 TTC39AQ5SRH9 613 aa16.57■□□□□ 0.24
LINC00540-202ENST00000616974 ERC1Q8IUD2 1116 aa16.57■□□□□ 0.24
LINC00540-202ENST00000616974 LRRCC1Q9C099 1032 aa16.57■□□□□ 0.24
LINC00540-202ENST00000616974 PGAP2Q9UHJ9 254 aa16.57■□□□□ 0.24
LINC00540-202ENST00000616974 CDK5RAP2Q96SN8 1893 aa16.56■□□□□ 0.24
LINC00540-202ENST00000616974 CRKP46108 304 aa16.56■□□□□ 0.24
LINC00540-202ENST00000616974 RBM5P52756 815 aaKnown RBP eCLIP16.56■□□□□ 0.24
LINC00540-202ENST00000616974 SLFNL1Q499Z3 407 aa16.56■□□□□ 0.24
LINC00540-202ENST00000616974 B4GALNT3Q6L9W6 998 aa16.56■□□□□ 0.24
LINC00540-202ENST00000616974 PIH1D3Q9NQM4 214 aaKnown RBP16.56■□□□□ 0.24
LINC00540-202ENST00000616974 DENND2AQ9ULE3 1009 aa16.56■□□□□ 0.24
LINC00540-202ENST00000616974 AK9Q5TCS8 1911 aa16.56■□□□□ 0.24
LINC00540-202ENST00000616974 SPDYE2BA6NHP3 402 aa16.55■□□□□ 0.24
LINC00540-202ENST00000616974 SPDYE6P0CI01 402 aa16.55■□□□□ 0.24
LINC00540-202ENST00000616974 FKBP1AP62942 108 aaKnown RBP16.55■□□□□ 0.24
LINC00540-202ENST00000616974 CLASRPQ8N2M8 674 aaKnown RBP16.55■□□□□ 0.24
LINC00540-202ENST00000616974 TDRD3Q9H7E2 651 aaKnown RBP16.55■□□□□ 0.24
LINC00540-202ENST00000616974 GNL3LQ9NVN8 582 aaKnown RBP16.55■□□□□ 0.24
LINC00540-202ENST00000616974 RAB11FIP3O75154 756 aa16.55■□□□□ 0.24
LINC00540-202ENST00000616974 HSP90AB4PQ58FF6 505 aa16.55■□□□□ 0.24
LINC00540-202ENST00000616974 CST9Q5W186 159 aa16.55■□□□□ 0.24
LINC00540-202ENST00000616974 KRT26Q7Z3Y9 468 aa16.55■□□□□ 0.24
LINC00540-202ENST00000616974 ADGRA1Q86SQ6 560 aa16.55■□□□□ 0.24
LINC00540-202ENST00000616974 CENPFP49454 3210 aa16.55■□□□□ 0.24
LINC00540-202ENST00000616974 HDAC1Q13547 482 aaPredicted RBP16.54■□□□□ 0.24
LINC00540-202ENST00000616974 WDR66Q8TBY9 1149 aa16.54■□□□□ 0.24
LINC00540-202ENST00000616974 FSTL1Q12841 308 aa16.54■□□□□ 0.24
LINC00540-202ENST00000616974 DLGAP5Q15398 846 aa16.54■□□□□ 0.24
LINC00540-202ENST00000616974 APOBEC3HQ6NTF7 200 aaKnown RBP16.54■□□□□ 0.24
LINC00540-202ENST00000616974 ZNF408Q9H9D4 720 aa16.54■□□□□ 0.24
LINC00540-202ENST00000616974 DAGLAQ9Y4D2 1042 aa16.54■□□□□ 0.24
LINC00540-202ENST00000616974 MYH7P12883 1935 aa16.54■□□□□ 0.24
LINC00540-202ENST00000616974 IFIT2P09913 472 aaKnown RBP16.53■□□□□ 0.24
LINC00540-202ENST00000616974 MECOMQ03112 1051 aa16.53■□□□□ 0.24
LINC00540-202ENST00000616974 CCDC158Q5M9N0 1113 aa16.53■□□□□ 0.24
LINC00540-202ENST00000616974 SKAP1Q86WV1 359 aa16.53■□□□□ 0.24
LINC00540-202ENST00000616974 TBC1D22AQ8WUA7 517 aa16.53■□□□□ 0.24
LINC00540-202ENST00000616974 BOLA2Q9H3K6 86 aa16.53■□□□□ 0.24
LINC00540-202ENST00000616974 LDHBP07195 334 aaKnown RBP16.52■□□□□ 0.24
LINC00540-202ENST00000616974 HSPA6P17066 643 aa16.52■□□□□ 0.24
LINC00540-202ENST00000616974 ANKRD45Q5TZF3 282 aa16.52■□□□□ 0.24
LINC00540-202ENST00000616974 VEZTQ9HBM0 779 aa16.52■□□□□ 0.24
LINC00540-202ENST00000616974 SALL1Q9NSC2 1324 aa16.52■□□□□ 0.24
LINC00540-202ENST00000616974 HDAC9Q9UKV0 1011 aa16.52■□□□□ 0.24
LINC00540-202ENST00000616974 SEMA3EO15041 775 aa16.52■□□□□ 0.23
LINC00540-202ENST00000616974 SLURP2P0DP57 97 aa16.52■□□□□ 0.23
LINC00540-202ENST00000616974 MOB2Q70IA6 237 aa16.52■□□□□ 0.23
LINC00540-202ENST00000616974 SERPINA10Q9UK55 444 aa16.52■□□□□ 0.23
LINC00540-202ENST00000616974 ZC3H15Q8WU90 426 aaKnown RBP16.51■□□□□ 0.23
LINC00540-202ENST00000616974 NSUN4Q96CB9 384 aaKnown RBP16.51■□□□□ 0.23
LINC00540-202ENST00000616974 DNAJC2Q99543 621 aaKnown RBP16.51■□□□□ 0.23
LINC00540-202ENST00000616974 MAST2Q6P0Q8 1798 aa16.51■□□□□ 0.23
LINC00540-202ENST00000616974 MAP4K4O95819 1239 aaPredicted RBP16.51■□□□□ 0.23
LINC00540-202ENST00000616974 NFIAQ12857 509 aa16.51■□□□□ 0.23
LINC00540-202ENST00000616974 MTMR14Q8NCE2 650 aa16.51■□□□□ 0.23
LINC00540-202ENST00000616974 LNPKQ9C0E8 428 aa16.51■□□□□ 0.23
LINC00540-202ENST00000616974 SSC5DA1L4H1 1573 aa16.5■□□□□ 0.23
LINC00540-202ENST00000616974 TCP10L2B9ZVM9 353 aa16.5■□□□□ 0.23
LINC00540-202ENST00000616974 UQCRFS1P1P0C7P4 283 aa16.5■□□□□ 0.23
LINC00540-202ENST00000616974 DCPSQ96C86 337 aaKnown RBP16.5■□□□□ 0.23
LINC00540-202ENST00000616974 ZNF70Q9UC06 446 aaPredicted RBP16.5■□□□□ 0.23
LINC00540-202ENST00000616974 PDS5AQ29RF7 1337 aaKnown RBP16.5■□□□□ 0.23
LINC00540-202ENST00000616974 SALL3Q9BXA9 1300 aa16.5■□□□□ 0.23
LINC00540-202ENST00000616974 CELF2O95319 508 aaKnown RBP16.49■□□□□ 0.23
LINC00540-202ENST00000616974 APLP1P51693 650 aa16.49■□□□□ 0.23
LINC00540-202ENST00000616974 CDC37L1Q7L3B6 337 aa16.49■□□□□ 0.23
LINC00540-202ENST00000616974 SMC5Q8IY18 1101 aa16.49■□□□□ 0.23
LINC00540-202ENST00000616974 TEKT1Q969V4 418 aa16.49■□□□□ 0.23
LINC00540-202ENST00000616974 ZNF512BQ96KM6 892 aaPredicted RBP16.49■□□□□ 0.23
LINC00540-202ENST00000616974 RAI14Q9P0K7 980 aa16.49■□□□□ 0.23
LINC00540-202ENST00000616974 GOLIM4O00461 696 aa16.49■□□□□ 0.23
LINC00540-202ENST00000616974 PRKG1Q13976 671 aa16.49■□□□□ 0.23
LINC00540-202ENST00000616974 SPDYE2Q495Y8 402 aa16.49■□□□□ 0.23
LINC00540-202ENST00000616974 ZFPM1Q8IX07 1006 aa16.49■□□□□ 0.23
LINC00540-202ENST00000616974 CDCA5Q96FF9 252 aa16.49■□□□□ 0.23
LINC00540-202ENST00000616974 ZDHHC15Q96MV8 337 aa16.49■□□□□ 0.23
LINC00540-202ENST00000616974 TMEM39BQ9GZU3 492 aa16.49■□□□□ 0.23
LINC00540-202ENST00000616974 CNTNAP1P78357 1384 aa16.49■□□□□ 0.23
LINC00540-202ENST00000616974 CDC42EP5Q6NZY7 148 aa16.48■□□□□ 0.23
LINC00540-202ENST00000616974 ERICH6Q7L0X2 663 aa16.48■□□□□ 0.23
LINC00540-202ENST00000616974 DZIP1Q86YF9 867 aaKnown RBP16.48■□□□□ 0.23
LINC00540-202ENST00000616974 SULF1Q8IWU6 871 aa16.48■□□□□ 0.23
LINC00540-202ENST00000616974 LRP2BPQ9P2M1 347 aa16.48■□□□□ 0.23
LINC00540-202ENST00000616974 OTOFQ9HC10 1997 aa16.48■□□□□ 0.23
LINC00540-202ENST00000616974 IDH1O75874 414 aaKnown RBP16.48■□□□□ 0.23
LINC00540-202ENST00000616974 DEFB129Q9H1M3 183 aa16.48■□□□□ 0.23
LINC00540-202ENST00000616974 HHIPL2Q6UWX4 724 aa16.47■□□□□ 0.23
LINC00540-202ENST00000616974 PI4K2BQ8TCG2 481 aa16.47■□□□□ 0.23
LINC00540-202ENST00000616974 GAKO14976 1311 aa16.47■□□□□ 0.23
LINC00540-202ENST00000616974 ZBTB22O15209 634 aa16.46■□□□□ 0.23
LINC00540-202ENST00000616974 TCP10Q12799 353 aa16.46■□□□□ 0.23
LINC00540-202ENST00000616974 NBPF12Q5TAG4 269 aaPredicted RBP16.46■□□□□ 0.23
LINC00540-202ENST00000616974 DDX4Q9NQI0 724 aaKnown RBP16.46■□□□□ 0.23
LINC00540-202ENST00000616974 MKRN1Q9UHC7 482 aaKnown RBP16.46■□□□□ 0.23
LINC00540-202ENST00000616974 SUGT1Q9Y2Z0 365 aa16.46■□□□□ 0.23
LINC00540-202ENST00000616974 FOCADQ5VW36 1801 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms