RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 G3BP1Q13283 466 aaKnown RBP eCLIP5.55□□□□□ -1.52
VPS13D-213ENST00000613099 FKBP15Q5T1M5 1219 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 PPP1R21Q6ZMI0 780 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 KCNG4Q8TDN1 519 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 HOOK2Q96ED9 719 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 EID1Q9Y6B2 187 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 EVC2Q86UK5 1308 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 TPD52L2O43399 206 aaKnown RBP5.55□□□□□ -1.52
VPS13D-213ENST00000613099 FERP16591 822 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 MAP3K21Q5TCX8 1036 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 MYSM1Q5VVJ2 828 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 MYLK4Q86YV6 388 aaPredicted RBP5.55□□□□□ -1.52
VPS13D-213ENST00000613099 LRRC8AQ8IWT6 810 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 NME8Q8N427 588 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 IFT81Q8WYA0 676 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 PYM1Q9BRP8 204 aaKnown RBP5.55□□□□□ -1.52
VPS13D-213ENST00000613099 SPHKAPQ2M3C7 1700 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 E7EVH7 732 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 SPAG1Q07617 926 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 INTS8Q75QN2 995 aaKnown RBP5.55□□□□□ -1.52
VPS13D-213ENST00000613099 GNAI3P08754 354 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 PAK2Q13177 524 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 MTMR3Q13615 1198 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 USP33Q8TEY7 942 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 CCDC102BQ68D86 513 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 PARD6BQ9BYG5 372 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 DRC3Q9H069 523 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 GJA8P48165 433 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 CC2D2BQ6DHV5 1058 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 CNOT10Q9H9A5 744 aaKnown RBP5.55□□□□□ -1.52
VPS13D-213ENST00000613099 KIF24Q5T7B8 1368 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 KRT86O43790 486 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 STMN1P16949 149 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 APOBRQ0VD83 1088 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 MIEF2Q96C03 454 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 ATP5DP30049 168 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 CA8P35219 290 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 CYLC1P35663 651 aaPredicted RBP5.55□□□□□ -1.52
VPS13D-213ENST00000613099 GNAI1P63096 354 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 ZNF569Q5MCW4 686 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 EXOC8Q8IYI6 725 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 FAM81AQ8TBF8 368 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 ATG3Q9NT62 314 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 ATP2B2Q01814 1243 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 BRAPQ7Z569 592 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 LMBR1Q8WVP7 490 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 CDC42BPAQ5VT25 1732 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 SMTNP53814 917 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 OLFM3Q96PB7 478 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 GDPD2Q9HCC8 539 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 NBPF14Q5TI25 921 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 CLEC17AQ6ZS10 378 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 CNGA4Q8IV77 575 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 PPP1R1BQ9UD71 204 aaPredicted RBP5.55□□□□□ -1.52
VPS13D-213ENST00000613099 VPS52Q8N1B4 723 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 TUBB6Q9BUF5 446 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 PHAXQ9H814 394 aaKnown RBP5.54□□□□□ -1.52
VPS13D-213ENST00000613099 DACT1Q9NYF0 836 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 TAF11Q15544 211 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 FCHSD1Q86WN1 690 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 GSDMBQ8TAX9 411 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 ZNF483Q8TF39 744 aaPredicted RBP5.54□□□□□ -1.52
VPS13D-213ENST00000613099 KLHL14Q9P2G3 628 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 ARHGAP10A1A4S6 786 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 PECAM1P16284 738 aaPredicted RBP5.54□□□□□ -1.52
VPS13D-213ENST00000613099 HPDP32754 393 aaPredicted RBP5.54□□□□□ -1.52
VPS13D-213ENST00000613099 CLSTN2Q9H4D0 955 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 ARIH1Q9Y4X5 557 aaPredicted RBP5.54□□□□□ -1.52
VPS13D-213ENST00000613099 MAP7D3Q8IWC1 876 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 GAS2L2Q8NHY3 880 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 IFNKQ9P0W0 207 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 EIF2AQ9BY44 585 aaKnown RBP5.54□□□□□ -1.52
VPS13D-213ENST00000613099 YIPF3Q9GZM5 350 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 NUB1Q9Y5A7 615 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 SCINQ9Y6U3 715 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 ATP5HO75947 161 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 MATR3P43243 847 aaKnown RBP eCLIP5.54□□□□□ -1.528e-7■■■■□ 21.9
VPS13D-213ENST00000613099 BLOC1S2Q6QNY1 142 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 MFN1Q8IWA4 741 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 PPP1R9AQ9ULJ8 1098 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 RIMBP3CA6NJZ7 1639 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 RIMBP3BA6NNM3 1639 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 RIMBP3Q9UFD9 1639 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 NPHP3Q7Z494 1330 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 CCDC178Q5BJE1 867 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 DNAJC25Q9H1X3 360 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 C10orf88Q9H8K7 445 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 BABAM1Q9NWV8 329 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 STAG3Q9UJ98 1225 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 CDC42BPBQ9Y5S2 1711 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 GNAI2P04899 355 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 NEK2P51955 445 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 SLC4A8Q2Y0W8 1093 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 APBB1IPQ7Z5R6 666 aaPredicted RBP5.54□□□□□ -1.52
VPS13D-213ENST00000613099 SIL1Q9H173 461 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 PRC1O43663 620 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 SASH1O94885 1247 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 RNF40O75150 1001 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 CNGA1P29973 690 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 KIAA0753Q2KHM9 967 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms