RNA–Protein interactions for RNA: ENST00000612417.4

CDH1-213, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 2,068 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-213ENST00000612417 AP5Z1O43299 807 aa17.25■□□□□ 0.35
CDH1-213ENST00000612417 TPM3P06753 285 aa17.25■□□□□ 0.35
CDH1-213ENST00000612417 HSPD1P10809 573 aaKnown RBP17.25■□□□□ 0.35
CDH1-213ENST00000612417 SF3B3Q15393 1217 aaKnown RBP17.25■□□□□ 0.35
CDH1-213ENST00000612417 SLC10A5Q5PT55 438 aa17.25■□□□□ 0.35
CDH1-213ENST00000612417 SASS6Q6UVJ0 657 aa17.25■□□□□ 0.35
CDH1-213ENST00000612417 NSUN7Q8NE18 718 aaKnown RBP17.25■□□□□ 0.35
CDH1-213ENST00000612417 NLRP3Q96P20 1036 aa17.25■□□□□ 0.35
CDH1-213ENST00000612417 CFAP45Q9UL16 551 aa17.25■□□□□ 0.35
CDH1-213ENST00000612417 MAST3O60307 1309 aa17.25■□□□□ 0.35
CDH1-213ENST00000612417 CASZ1Q86V15 1759 aa17.25■□□□□ 0.35
CDH1-213ENST00000612417 TAF1P21675 1872 aa17.25■□□□□ 0.35
CDH1-213ENST00000612417 H3BQV1 296 aa17.25■□□□□ 0.35
CDH1-213ENST00000612417 IFFO2Q5TF58 517 aa17.25■□□□□ 0.35
CDH1-213ENST00000612417 ANKRD18AQ8IVF6 992 aa17.25■□□□□ 0.35
CDH1-213ENST00000612417 PGBD1Q96JS3 809 aa17.25■□□□□ 0.35
CDH1-213ENST00000612417 KIF3AQ9Y496 699 aa17.25■□□□□ 0.35
CDH1-213ENST00000612417 SALL1Q9NSC2 1324 aa17.25■□□□□ 0.35
CDH1-213ENST00000612417 ABCC12Q96J65 1359 aa17.25■□□□□ 0.35
CDH1-213ENST00000612417 LPIN2Q92539 896 aa17.24■□□□□ 0.35
CDH1-213ENST00000612417 SPTLC3Q9NUV7 552 aa17.24■□□□□ 0.35
CDH1-213ENST00000612417 E7EWF7 191 aa17.24■□□□□ 0.35
CDH1-213ENST00000612417 SLC5A1P13866 664 aa17.24■□□□□ 0.35
CDH1-213ENST00000612417 COL24A1Q17RW2 1714 aa17.24■□□□□ 0.35
CDH1-213ENST00000612417 PROM2Q8N271 834 aa17.24■□□□□ 0.35
CDH1-213ENST00000612417 CHMP4CQ96CF2 233 aa17.24■□□□□ 0.35
CDH1-213ENST00000612417 LRP5O75197 1615 aa17.23■□□□□ 0.35
CDH1-213ENST00000612417 CTDNEP1O95476 244 aa17.23■□□□□ 0.35
CDH1-213ENST00000612417 HMGB2P26583 209 aaKnown RBP17.23■□□□□ 0.35
CDH1-213ENST00000612417 NFIXQ14938 502 aa17.23■□□□□ 0.35
CDH1-213ENST00000612417 LRRFIP1Q32MZ4 808 aaKnown RBP17.23■□□□□ 0.35
CDH1-213ENST00000612417 ATL3Q6DD88 541 aa17.23■□□□□ 0.35
CDH1-213ENST00000612417 ZNF274Q96GC6 653 aaPredicted RBP17.23■□□□□ 0.35
CDH1-213ENST00000612417 LRRC2Q9BYS8 371 aa17.23■□□□□ 0.35
CDH1-213ENST00000612417 UQCRHLA0A096LP55 91 aa17.22■□□□□ 0.35
CDH1-213ENST00000612417 UQCRHP07919 91 aa17.22■□□□□ 0.35
CDH1-213ENST00000612417 ADD1P35611 737 aaKnown RBP17.22■□□□□ 0.35
CDH1-213ENST00000612417 CHRNDQ07001 517 aa17.22■□□□□ 0.35
CDH1-213ENST00000612417 SCARF1Q14162 830 aa17.22■□□□□ 0.35
CDH1-213ENST00000612417 NOLC1Q14978 699 aaKnown RBP eCLIP17.22■□□□□ 0.35
CDH1-213ENST00000612417 CAMK4Q16566 473 aa17.22■□□□□ 0.35
CDH1-213ENST00000612417 TTC12Q9H892 705 aaPredicted RBP17.22■□□□□ 0.35
CDH1-213ENST00000612417 CARMIL3Q8ND23 1372 aa17.22■□□□□ 0.35
CDH1-213ENST00000612417 SNAP23O00161 211 aa17.22■□□□□ 0.35
CDH1-213ENST00000612417 NR1I2O75469 434 aa17.22■□□□□ 0.35
CDH1-213ENST00000612417 CAVIN2O95810 425 aa17.22■□□□□ 0.35
CDH1-213ENST00000612417 ZAP70P43403 619 aa17.22■□□□□ 0.35
CDH1-213ENST00000612417 EVCP57679 992 aa17.22■□□□□ 0.35
CDH1-213ENST00000612417 SLFNL1Q499Z3 407 aa17.22■□□□□ 0.35
CDH1-213ENST00000612417 DDX11Q96FC9 970 aa17.22■□□□□ 0.35
CDH1-213ENST00000612417 ZNF830Q96NB3 372 aaPredicted RBP17.22■□□□□ 0.35
CDH1-213ENST00000612417 PTPDC1A2A3K4 754 aa17.21■□□□□ 0.35
CDH1-213ENST00000612417 GOLGA6L6A8MZA4 724 aa17.21■□□□□ 0.35
CDH1-213ENST00000612417 DYNC1I1O14576 645 aa17.21■□□□□ 0.35
CDH1-213ENST00000612417 ZFYP08048 801 aaPredicted RBP17.21■□□□□ 0.35
CDH1-213ENST00000612417 FGFR2P21802 821 aa17.21■□□□□ 0.35
CDH1-213ENST00000612417 APOBRQ0VD83 1088 aa17.21■□□□□ 0.35
CDH1-213ENST00000612417 PI16Q6UXB8 463 aa17.21■□□□□ 0.35
CDH1-213ENST00000612417 TFCP2L1Q9NZI6 479 aa17.21■□□□□ 0.35
CDH1-213ENST00000612417 M0R2C6 588 aa17.2■□□□□ 0.34
CDH1-213ENST00000612417 PLSCR1O15162 318 aa17.2■□□□□ 0.34
CDH1-213ENST00000612417 GYS1P13807 737 aa17.2■□□□□ 0.34
CDH1-213ENST00000612417 PHKA1P46020 1223 aa17.2■□□□□ 0.34
CDH1-213ENST00000612417 CCDC102BQ68D86 513 aa17.2■□□□□ 0.34
CDH1-213ENST00000612417 CNBD1Q8NA66 436 aa17.2■□□□□ 0.34
CDH1-213ENST00000612417 BICD2Q8TD16 824 aa17.2■□□□□ 0.34
CDH1-213ENST00000612417 RCOR1Q9UKL0 485 aa17.2■□□□□ 0.34
CDH1-213ENST00000612417 AKAP11Q9UKA4 1901 aa17.2■□□□□ 0.34
CDH1-213ENST00000612417 MCAMP43121 646 aa17.2■□□□□ 0.34
CDH1-213ENST00000612417 ANO6Q4KMQ2 910 aa17.2■□□□□ 0.34
CDH1-213ENST00000612417 CKAP2LQ8IYA6 745 aa17.2■□□□□ 0.34
CDH1-213ENST00000612417 CELF1Q92879 486 aaKnown RBP17.2■□□□□ 0.34
CDH1-213ENST00000612417 PDCL3Q9H2J4 239 aa17.2■□□□□ 0.34
CDH1-213ENST00000612417 CBX8Q9HC52 389 aa17.2■□□□□ 0.34
CDH1-213ENST00000612417 BSDC1Q9NW68 430 aaPredicted RBP17.2■□□□□ 0.34
CDH1-213ENST00000612417 UQCRFS1P1P0C7P4 283 aa17.19■□□□□ 0.34
CDH1-213ENST00000612417 PDIA3P30101 505 aaKnown RBP17.19■□□□□ 0.34
CDH1-213ENST00000612417 PLCB2Q00722 1185 aa17.19■□□□□ 0.34
CDH1-213ENST00000612417 POTEAQ6S8J7 498 aa17.19■□□□□ 0.34
CDH1-213ENST00000612417 TDRD7Q8NHU6 1098 aaKnown RBP17.19■□□□□ 0.34
CDH1-213ENST00000612417 OSBP2Q969R2 916 aa17.19■□□□□ 0.34
CDH1-213ENST00000612417 RGS17Q9UGC6 210 aaPredicted RBP17.19■□□□□ 0.34
CDH1-213ENST00000612417 CTNNA3Q9UI47 895 aa17.19■□□□□ 0.34
CDH1-213ENST00000612417 RPS8P62241 208 aaKnown RBP17.19■□□□□ 0.34
CDH1-213ENST00000612417 LUZP1Q86V48 1076 aa17.19■□□□□ 0.34
CDH1-213ENST00000612417 MPNDQ8N594 471 aa17.19■□□□□ 0.34
CDH1-213ENST00000612417 ZNF512BQ96KM6 892 aaPredicted RBP17.19■□□□□ 0.34
CDH1-213ENST00000612417 PRIMPOLQ96LW4 560 aa17.19■□□□□ 0.34
CDH1-213ENST00000612417 COL4A1P02462 1669 aa17.18■□□□□ 0.34
CDH1-213ENST00000612417 A0A0G2JLW4 131 aa17.18■□□□□ 0.34
CDH1-213ENST00000612417 FOXP2O15409 715 aa17.18■□□□□ 0.34
CDH1-213ENST00000612417 KIAA1524Q8TCG1 905 aa17.18■□□□□ 0.34
CDH1-213ENST00000612417 KCNF1Q9H3M0 494 aa17.18■□□□□ 0.34
CDH1-213ENST00000612417 CTAGE5O15320 804 aa17.17■□□□□ 0.34
CDH1-213ENST00000612417 ARAP2Q8WZ64 1704 aa17.17■□□□□ 0.34
CDH1-213ENST00000612417 ARID4AP29374 1257 aaPredicted RBP17.17■□□□□ 0.34
CDH1-213ENST00000612417 WASHC4Q2M389 1173 aa17.17■□□□□ 0.34
CDH1-213ENST00000612417 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.17■□□□□ 0.34
CDH1-213ENST00000612417 MYRIPQ8NFW9 859 aa17.17■□□□□ 0.34
CDH1-213ENST00000612417 ZNF396Q96N95 335 aaPredicted RBP17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms