RNA–Protein interactions for RNA: ENST00000611848.1

SMAD4-217, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 1,648 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-217ENST00000611848 TRPM4Q8TD43 1214 aa10.77□□□□□ -0.68
SMAD4-217ENST00000611848 DBNDD2Q9BQY9 259 aa10.77□□□□□ -0.68
SMAD4-217ENST00000611848 PGAP2Q9UHJ9 254 aa10.77□□□□□ -0.68
SMAD4-217ENST00000611848 SALL1Q9NSC2 1324 aa10.77□□□□□ -0.69
SMAD4-217ENST00000611848 TTC39AQ5SRH9 613 aa10.76□□□□□ -0.69
SMAD4-217ENST00000611848 RBM26Q5T8P6 1007 aaKnown RBP10.76□□□□□ -0.69
SMAD4-217ENST00000611848 ZNF512BQ96KM6 892 aaPredicted RBP10.76□□□□□ -0.69
SMAD4-217ENST00000611848 LRRCC1Q9C099 1032 aa10.76□□□□□ -0.69
SMAD4-217ENST00000611848 CCDC8Q9H0W5 538 aaPredicted RBP10.76□□□□□ -0.69
SMAD4-217ENST00000611848 IL1RAPL2Q9NP60 686 aa10.76□□□□□ -0.69
SMAD4-217ENST00000611848 DBNLQ9UJU6 430 aaKnown RBP10.76□□□□□ -0.69
SMAD4-217ENST00000611848 F8W031 263 aaPredicted RBP10.76□□□□□ -0.69
SMAD4-217ENST00000611848 NUCB1Q02818 461 aa10.76□□□□□ -0.69
SMAD4-217ENST00000611848 RASGRF1Q13972 1273 aa10.76□□□□□ -0.69
SMAD4-217ENST00000611848 MTMR14Q8NCE2 650 aa10.76□□□□□ -0.69
SMAD4-217ENST00000611848 MRIQ9BWK5 157 aa10.76□□□□□ -0.69
SMAD4-217ENST00000611848 TTF2Q9UNY4 1162 aaKnown RBP10.76□□□□□ -0.69
SMAD4-217ENST00000611848 AKAP11Q9UKA4 1901 aa10.75□□□□□ -0.69
SMAD4-217ENST00000611848 MAST3O60307 1309 aa10.75□□□□□ -0.69
SMAD4-217ENST00000611848 COL1A1P02452 1464 aaPredicted RBP10.75□□□□□ -0.69
SMAD4-217ENST00000611848 EGFRP00533 1210 aa10.75□□□□□ -0.69
SMAD4-217ENST00000611848 IFIT2P09913 472 aaKnown RBP10.75□□□□□ -0.69
SMAD4-217ENST00000611848 HDLBPQ00341 1268 aaKnown RBP10.75□□□□□ -0.69
SMAD4-217ENST00000611848 SCARF1Q14162 830 aa10.75□□□□□ -0.69
SMAD4-217ENST00000611848 CNTROBQ8N137 903 aa10.75□□□□□ -0.69
SMAD4-217ENST00000611848 SPATA5Q8NB90 893 aa10.75□□□□□ -0.69
SMAD4-217ENST00000611848 GCC1Q96CN9 775 aa10.75□□□□□ -0.69
SMAD4-217ENST00000611848 SERPINA10Q9UK55 444 aa10.75□□□□□ -0.69
SMAD4-217ENST00000611848 WNT10BO00744 389 aa10.74□□□□□ -0.69
SMAD4-217ENST00000611848 MCAMP43121 646 aa10.74□□□□□ -0.69
SMAD4-217ENST00000611848 VASPP50552 380 aaPredicted RBP10.74□□□□□ -0.69
SMAD4-217ENST00000611848 DLGAP5Q15398 846 aa10.74□□□□□ -0.69
SMAD4-217ENST00000611848 CFAP100Q494V2 611 aa10.74□□□□□ -0.69
SMAD4-217ENST00000611848 MAP1SQ66K74 1059 aaPredicted RBP10.74□□□□□ -0.69
SMAD4-217ENST00000611848 SPTY2D1Q68D10 685 aaPredicted RBP10.74□□□□□ -0.69
SMAD4-217ENST00000611848 ZBED3Q96IU2 234 aaPredicted RBP10.74□□□□□ -0.69
SMAD4-217ENST00000611848 TLR7Q9NYK1 1049 aaKnown RBP10.74□□□□□ -0.69
SMAD4-217ENST00000611848 HMG20BQ9P0W2 317 aa10.74□□□□□ -0.69
SMAD4-217ENST00000611848 IGSF3O75054 1194 aa10.73□□□□□ -0.69
SMAD4-217ENST00000611848 CAPN15O75808 1086 aa10.73□□□□□ -0.69
SMAD4-217ENST00000611848 SEC24BO95487 1268 aa10.73□□□□□ -0.69
SMAD4-217ENST00000611848 ITGBL1O95965 494 aaPredicted RBP10.73□□□□□ -0.69
SMAD4-217ENST00000611848 LDHBP07195 334 aaKnown RBP10.73□□□□□ -0.69
SMAD4-217ENST00000611848 RBM5P52756 815 aaKnown RBP eCLIP10.73□□□□□ -0.69
SMAD4-217ENST00000611848 GRIK5Q16478 980 aa10.73□□□□□ -0.69
SMAD4-217ENST00000611848 CDC37L1Q7L3B6 337 aa10.73□□□□□ -0.69
SMAD4-217ENST00000611848 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.73□□□□□ -0.69
SMAD4-217ENST00000611848 DCPSQ96C86 337 aaKnown RBP10.73□□□□□ -0.69
SMAD4-217ENST00000611848 ECM29Q5VYK3 1845 aa10.73□□□□□ -0.69
SMAD4-217ENST00000611848 PITPNM2Q9BZ72 1349 aa10.73□□□□□ -0.69
SMAD4-217ENST00000611848 SPDYE2BA6NHP3 402 aa10.73□□□□□ -0.69
SMAD4-217ENST00000611848 MYO1BO43795 1136 aa10.73□□□□□ -0.69
SMAD4-217ENST00000611848 SMARCA5O60264 1052 aaPredicted RBP10.73□□□□□ -0.69
SMAD4-217ENST00000611848 SPDYE6P0CI01 402 aa10.73□□□□□ -0.69
SMAD4-217ENST00000611848 PRDX5P30044 214 aa10.73□□□□□ -0.69
SMAD4-217ENST00000611848 CRKP46108 304 aa10.73□□□□□ -0.69
SMAD4-217ENST00000611848 NBPF9Q3BBW0 867 aa10.73□□□□□ -0.69
SMAD4-217ENST00000611848 HHIPL2Q6UWX4 724 aa10.73□□□□□ -0.69
SMAD4-217ENST00000611848 TEKT1Q969V4 418 aa10.73□□□□□ -0.69
SMAD4-217ENST00000611848 GGA3Q9NZ52 723 aa10.73□□□□□ -0.69
SMAD4-217ENST00000611848 ABCF2Q9UG63 623 aa10.73□□□□□ -0.69
SMAD4-217ENST00000611848 PASKQ96RG2 1323 aa10.72□□□□□ -0.69
SMAD4-217ENST00000611848 MYH2Q9UKX2 1941 aa10.72□□□□□ -0.69
SMAD4-217ENST00000611848 ANGEL2Q5VTE6 544 aaKnown RBP10.72□□□□□ -0.69
SMAD4-217ENST00000611848 PI16Q6UXB8 463 aa10.72□□□□□ -0.69
SMAD4-217ENST00000611848 CHD1LQ86WJ1 897 aa10.72□□□□□ -0.69
SMAD4-217ENST00000611848 SULF1Q8IWU6 871 aa10.72□□□□□ -0.69
SMAD4-217ENST00000611848 SLF2Q8IX21 1173 aa10.72□□□□□ -0.69
SMAD4-217ENST00000611848 BCL11AQ9H165 835 aa10.72□□□□□ -0.69
SMAD4-217ENST00000611848 TRPM7Q96QT4 1865 aa10.71□□□□□ -0.69
SMAD4-217ENST00000611848 HSPA6P17066 643 aa10.71□□□□□ -0.69
SMAD4-217ENST00000611848 ANKRD45Q5TZF3 282 aa10.71□□□□□ -0.69
SMAD4-217ENST00000611848 KRT26Q7Z3Y9 468 aa10.71□□□□□ -0.69
SMAD4-217ENST00000611848 APOBEC3FQ8IUX4 373 aaKnown RBP10.71□□□□□ -0.69
SMAD4-217ENST00000611848 PRMT6Q96LA8 375 aaPredicted RBP10.71□□□□□ -0.69
SMAD4-217ENST00000611848 ZDHHC15Q96MV8 337 aa10.71□□□□□ -0.69
SMAD4-217ENST00000611848 SNRKQ9NRH2 765 aa10.71□□□□□ -0.69
SMAD4-217ENST00000611848 ASTN2O75129 1339 aaPredicted RBP10.71□□□□□ -0.7
SMAD4-217ENST00000611848 MYO5AQ9Y4I1 1855 aaKnown RBP10.7□□□□□ -0.7
SMAD4-217ENST00000611848 CYP2E1P05181 493 aaPredicted RBP10.7□□□□□ -0.7
SMAD4-217ENST00000611848 ATP5JP18859 108 aa10.7□□□□□ -0.7
SMAD4-217ENST00000611848 ZAP70P43403 619 aa10.7□□□□□ -0.7
SMAD4-217ENST00000611848 APLP1P51693 650 aa10.7□□□□□ -0.7
SMAD4-217ENST00000611848 USP48Q86UV5 1035 aa10.7□□□□□ -0.7
SMAD4-217ENST00000611848 DZIP1Q86YF9 867 aaKnown RBP10.7□□□□□ -0.7
SMAD4-217ENST00000611848 FAM163AQ96GL9 167 aaPredicted RBP10.7□□□□□ -0.7
SMAD4-217ENST00000611848 GPATCH3Q96I76 525 aa10.7□□□□□ -0.7
SMAD4-217ENST00000611848 GLIS2Q9BZE0 524 aaPredicted RBP10.7□□□□□ -0.7
SMAD4-217ENST00000611848 LRP2BPQ9P2M1 347 aa10.7□□□□□ -0.7
SMAD4-217ENST00000611848 PCDHAC2Q9Y5I4 1007 aa10.7□□□□□ -0.7
SMAD4-217ENST00000611848 DSG3P32926 999 aa10.69□□□□□ -0.7
SMAD4-217ENST00000611848 GSTO1P78417 241 aa10.69□□□□□ -0.7
SMAD4-217ENST00000611848 TTF1Q15361 905 aaPredicted RBP10.69□□□□□ -0.7
SMAD4-217ENST00000611848 SPDYE2Q495Y8 402 aa10.69□□□□□ -0.7
SMAD4-217ENST00000611848 APOBEC3HQ6NTF7 200 aaKnown RBP10.69□□□□□ -0.7
SMAD4-217ENST00000611848 TBC1D9Q6ZT07 1266 aa10.69□□□□□ -0.7
SMAD4-217ENST00000611848 TBC1D32Q96NH3 1257 aa10.69□□□□□ -0.7
SMAD4-217ENST00000611848 ECHDC1Q9NTX5 307 aa10.69□□□□□ -0.7
SMAD4-217ENST00000611848 RAI14Q9P0K7 980 aa10.69□□□□□ -0.7
SMAD4-217ENST00000611848 LDHCP07864 332 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 147.7 ms