RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 KIF4AO95239 1232 aa7.54□□□□□ -1.2
LINC00540-201ENST00000611481 PTPRAP18433 802 aa7.54□□□□□ -1.2
LINC00540-201ENST00000611481 CLEC10AQ8IUN9 316 aa7.54□□□□□ -1.2
LINC00540-201ENST00000611481 PBX4Q9BYU1 374 aa7.54□□□□□ -1.2
LINC00540-201ENST00000611481 SART1O43290 800 aaKnown RBP7.53□□□□□ -1.2
LINC00540-201ENST00000611481 EPHA1P21709 976 aa7.53□□□□□ -1.2
LINC00540-201ENST00000611481 ZAP70P43403 619 aa7.53□□□□□ -1.2
LINC00540-201ENST00000611481 DTX1Q86Y01 620 aa7.53□□□□□ -1.2
LINC00540-201ENST00000611481 FAM83CQ9BQN1 747 aa7.53□□□□□ -1.2
LINC00540-201ENST00000611481 SEC31BQ9NQW1 1179 aa7.53□□□□□ -1.2
LINC00540-201ENST00000611481 ABI2Q9NYB9 513 aaPredicted RBP7.53□□□□□ -1.2
LINC00540-201ENST00000611481 GOLGA3Q08378 1498 aa7.53□□□□□ -1.2
LINC00540-201ENST00000611481 LRRC7Q96NW7 1537 aa7.52□□□□□ -1.2
LINC00540-201ENST00000611481 CEP170BQ9Y4F5 1589 aaPredicted RBP7.52□□□□□ -1.21
LINC00540-201ENST00000611481 KRTAP4-8A0A0G2JLE6 195 aa7.52□□□□□ -1.21
LINC00540-201ENST00000611481 PRR19A6NJB7 356 aa7.52□□□□□ -1.21
LINC00540-201ENST00000611481 ADAMTS4O75173 837 aa7.52□□□□□ -1.21
LINC00540-201ENST00000611481 ELOAQ14241 798 aaKnown RBP7.52□□□□□ -1.21
LINC00540-201ENST00000611481 NCAPG2Q86XI2 1143 aa7.52□□□□□ -1.21
LINC00540-201ENST00000611481 FAM20CQ8IXL6 584 aa7.52□□□□□ -1.21
LINC00540-201ENST00000611481 GPR152Q8TDT2 470 aa7.52□□□□□ -1.21
LINC00540-201ENST00000611481 FOXD4L4Q8WXT5 416 aaPredicted RBP7.52□□□□□ -1.21
LINC00540-201ENST00000611481 SH2B1Q9NRF2 756 aaPredicted RBP7.52□□□□□ -1.21
LINC00540-201ENST00000611481 RNF114Q9Y508 228 aa7.52□□□□□ -1.21
LINC00540-201ENST00000611481 MYO3AQ8NEV4 1616 aa7.52□□□□□ -1.21
LINC00540-201ENST00000611481 RNF17Q9BXT8 1623 aaKnown RBP7.52□□□□□ -1.21
LINC00540-201ENST00000611481 CNTLNQ9NXG0 1405 aa7.52□□□□□ -1.21
LINC00540-201ENST00000611481 ZNF142P52746 1687 aaPredicted RBP7.51□□□□□ -1.21
LINC00540-201ENST00000611481 VWDEQ8N2E2 1590 aa7.51□□□□□ -1.21
LINC00540-201ENST00000611481 DDX3YO15523 660 aaKnown RBP7.51□□□□□ -1.21
LINC00540-201ENST00000611481 WNT11O96014 354 aa7.51□□□□□ -1.21
LINC00540-201ENST00000611481 ANKRD34AQ69YU3 496 aa7.51□□□□□ -1.21
LINC00540-201ENST00000611481 ADAMTSL4Q6UY14 1074 aa7.51□□□□□ -1.21
LINC00540-201ENST00000611481 FAM9AQ8IZU1 332 aaPredicted RBP7.51□□□□□ -1.21
LINC00540-201ENST00000611481 CEP120Q8N960 986 aa7.51□□□□□ -1.21
LINC00540-201ENST00000611481 UBASH3BQ8TF42 649 aa7.51□□□□□ -1.21
LINC00540-201ENST00000611481 WNT8BQ93098 351 aa7.51□□□□□ -1.21
LINC00540-201ENST00000611481 KLHDC7BQ96G42 594 aa7.51□□□□□ -1.21
LINC00540-201ENST00000611481 MKNK1Q9BUB5 465 aa7.51□□□□□ -1.21
LINC00540-201ENST00000611481 ADAM19Q9H013 955 aa7.51□□□□□ -1.21
LINC00540-201ENST00000611481 STIM2Q9P246 746 aa7.51□□□□□ -1.21
LINC00540-201ENST00000611481 ADAM11O75078 769 aa7.5□□□□□ -1.21
LINC00540-201ENST00000611481 CYP2E1P05181 493 aaPredicted RBP7.5□□□□□ -1.21
LINC00540-201ENST00000611481 BMP3P12645 472 aa7.5□□□□□ -1.21
LINC00540-201ENST00000611481 CABP4P57796 275 aa7.5□□□□□ -1.21
LINC00540-201ENST00000611481 NAA30Q147X3 362 aaPredicted RBP7.5□□□□□ -1.21
LINC00540-201ENST00000611481 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.5□□□□□ -1.21
LINC00540-201ENST00000611481 BEND4Q6ZU67 534 aa7.5□□□□□ -1.21
LINC00540-201ENST00000611481 SHKBP1Q8TBC3 707 aa7.5□□□□□ -1.21
LINC00540-201ENST00000611481 POP1Q99575 1024 aaKnown RBP7.5□□□□□ -1.21
LINC00540-201ENST00000611481 KCNF1Q9H3M0 494 aa7.5□□□□□ -1.21
LINC00540-201ENST00000611481 CXXC1Q9P0U4 656 aaPredicted RBP7.5□□□□□ -1.21
LINC00540-201ENST00000611481 ZMIZ1Q9ULJ6 1067 aa7.5□□□□□ -1.21
LINC00540-201ENST00000611481 ZMYM3Q14202 1370 aa7.49□□□□□ -1.21
LINC00540-201ENST00000611481 AGLP35573 1532 aa7.49□□□□□ -1.21
LINC00540-201ENST00000611481 H3BRJ5 948 aa7.49□□□□□ -1.21
LINC00540-201ENST00000611481 RXRBP28702 533 aa7.49□□□□□ -1.21
LINC00540-201ENST00000611481 ZNF772Q68DY9 489 aaPredicted RBP7.49□□□□□ -1.21
LINC00540-201ENST00000611481 CAPN12Q6ZSI9 719 aa7.49□□□□□ -1.21
LINC00540-201ENST00000611481 ABTB2Q8N961 1025 aa7.49□□□□□ -1.21
LINC00540-201ENST00000611481 RNF208Q9H0X6 261 aa7.49□□□□□ -1.21
LINC00540-201ENST00000611481 ZNF777Q9ULD5 760 aaPredicted RBP7.49□□□□□ -1.21
LINC00540-201ENST00000611481 HIF3AQ9Y2N7 669 aa7.49□□□□□ -1.21
LINC00540-201ENST00000611481 NEURL4Q96JN8 1562 aa7.49□□□□□ -1.21
LINC00540-201ENST00000611481 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.48□□□□□ -1.21
LINC00540-201ENST00000611481 PREPP48147 710 aa7.48□□□□□ -1.21
LINC00540-201ENST00000611481 PDE12Q6L8Q7 609 aaKnown RBP7.48□□□□□ -1.21
LINC00540-201ENST00000611481 STK32AQ8WU08 396 aa7.48□□□□□ -1.21
LINC00540-201ENST00000611481 ELP3Q9H9T3 547 aa7.48□□□□□ -1.21
LINC00540-201ENST00000611481 OSGEPQ9NPF4 335 aa7.48□□□□□ -1.21
LINC00540-201ENST00000611481 DIP2CQ9Y2E4 1556 aa7.48□□□□□ -1.21
LINC00540-201ENST00000611481 ZBTB39O15060 712 aa7.47□□□□□ -1.21
LINC00540-201ENST00000611481 TMEM132AQ24JP5 1023 aa7.47□□□□□ -1.21
LINC00540-201ENST00000611481 MEX3CQ5U5Q3 659 aaKnown RBP7.47□□□□□ -1.21
LINC00540-201ENST00000611481 FDX2Q6P4F2 183 aa7.47□□□□□ -1.21
LINC00540-201ENST00000611481 AFAP1Q8N556 730 aa7.47□□□□□ -1.21
LINC00540-201ENST00000611481 POLR1AO95602 1720 aaPredicted RBP7.47□□□□□ -1.21
LINC00540-201ENST00000611481 PLEKHD1A6NEE1 506 aa7.46□□□□□ -1.22
LINC00540-201ENST00000611481 WDR64B1ANS9 1081 aa7.46□□□□□ -1.22
LINC00540-201ENST00000611481 ZNF438Q7Z4V0 828 aa7.46□□□□□ -1.22
LINC00540-201ENST00000611481 RUSC1Q9BVN2 902 aa7.46□□□□□ -1.22
LINC00540-201ENST00000611481 ZMYND15Q9H091 742 aa7.46□□□□□ -1.22
LINC00540-201ENST00000611481 REREQ9P2R6 1566 aa7.46□□□□□ -1.22
LINC00540-201ENST00000611481 FAM135BQ49AJ0 1406 aa7.45□□□□□ -1.22
LINC00540-201ENST00000611481 MROH2AA6NES4 1674 aa7.45□□□□□ -1.22
LINC00540-201ENST00000611481 GAS2O43903 313 aaKnown RBP7.45□□□□□ -1.22
LINC00540-201ENST00000611481 RPLP1P05386 114 aaKnown RBP7.45□□□□□ -1.22
LINC00540-201ENST00000611481 YY1P25490 414 aa7.45□□□□□ -1.22
LINC00540-201ENST00000611481 NLRP12P59046 1061 aa7.45□□□□□ -1.22
LINC00540-201ENST00000611481 ERICH6Q7L0X2 663 aa7.45□□□□□ -1.22
LINC00540-201ENST00000611481 GIMAP7Q8NHV1 300 aa7.45□□□□□ -1.22
LINC00540-201ENST00000611481 TMEM63CQ9P1W3 806 aa7.45□□□□□ -1.22
LINC00540-201ENST00000611481 KANSL3Q9P2N6 904 aa7.45□□□□□ -1.22
LINC00540-201ENST00000611481 TIMELESSQ9UNS1 1208 aa7.45□□□□□ -1.22
LINC00540-201ENST00000611481 ZNF518AQ6AHZ1 1483 aa7.44□□□□□ -1.22
LINC00540-201ENST00000611481 CDK12Q9NYV4 1490 aaPredicted RBP7.44□□□□□ -1.22
LINC00540-201ENST00000611481 STRCP1A6NGW2 1772 aa7.44□□□□□ -1.22
LINC00540-201ENST00000611481 ARL4DP49703 201 aa7.44□□□□□ -1.22
LINC00540-201ENST00000611481 NUDT16Q96DE0 195 aaKnown RBP7.44□□□□□ -1.22
LINC00540-201ENST00000611481 PIM2Q9P1W9 311 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms