RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 TMEM87BQ96K49 555 aa23.07■■□□□ 1.28
UPF1-207ENST00000599848 MAK16Q9BXY0 300 aaKnown RBP23.07■■□□□ 1.28
UPF1-207ENST00000599848 IQUBQ8NA54 791 aa23.07■■□□□ 1.28
UPF1-207ENST00000599848 NEK11Q8NG66 645 aa23.07■■□□□ 1.28
UPF1-207ENST00000599848 POLR3GO15318 223 aaPredicted RBP23.07■■□□□ 1.28
UPF1-207ENST00000599848 SPOUT1Q5T280 376 aaKnown RBP23.07■■□□□ 1.28
UPF1-207ENST00000599848 CHURC1Q8WUH1 139 aa23.07■■□□□ 1.28
UPF1-207ENST00000599848 EYA2O00167 538 aa23.07■■□□□ 1.28
UPF1-207ENST00000599848 TUBB4BP68371 445 aa23.07■■□□□ 1.28
UPF1-207ENST00000599848 TTC14Q96N46 770 aa23.07■■□□□ 1.28
UPF1-207ENST00000599848 SBDSQ9Y3A5 250 aaKnown RBP eCLIP23.07■■□□□ 1.28
UPF1-207ENST00000599848 VWA3BQ502W6 1294 aa23.06■■□□□ 1.28
UPF1-207ENST00000599848 NLGN1Q8N2Q7 840 aa23.06■■□□□ 1.28
UPF1-207ENST00000599848 NSRP1Q9H0G5 558 aaKnown RBP23.06■■□□□ 1.28
UPF1-207ENST00000599848 EPB41P11171 864 aaKnown RBP23.06■■□□□ 1.28
UPF1-207ENST00000599848 ZNF165P49910 485 aa23.06■■□□□ 1.28
UPF1-207ENST00000599848 GNPTABQ3T906 1256 aa23.06■■□□□ 1.28
UPF1-207ENST00000599848 CCDC125Q86Z20 511 aa23.06■■□□□ 1.28
UPF1-207ENST00000599848 NACA2Q9H009 215 aa23.06■■□□□ 1.28
UPF1-207ENST00000599848 NOL12Q9UGY1 213 aaKnown RBP eCLIP23.06■■□□□ 1.286e-7■■■■■ 32.1
UPF1-207ENST00000599848 V9GYY5 206 aaPredicted RBP23.06■■□□□ 1.28
UPF1-207ENST00000599848 ASXL1Q8IXJ9 1541 aa23.06■■□□□ 1.28
UPF1-207ENST00000599848 NBPF3Q9H094 633 aa23.06■■□□□ 1.28
UPF1-207ENST00000599848 BCCIPQ9P287 314 aaKnown RBP eCLIP23.06■■□□□ 1.28
UPF1-207ENST00000599848 STK10O94804 968 aaKnown RBP23.06■■□□□ 1.28
UPF1-207ENST00000599848 MROH5Q6ZUA9 1318 aa23.06■■□□□ 1.28
UPF1-207ENST00000599848 BIRC3Q13489 604 aa23.06■■□□□ 1.28
UPF1-207ENST00000599848 SV2BQ7L1I2 683 aa23.06■■□□□ 1.28
UPF1-207ENST00000599848 DPH6Q7L8W6 267 aa23.06■■□□□ 1.28
UPF1-207ENST00000599848 GSTA5Q7RTV2 222 aa23.06■■□□□ 1.28
UPF1-207ENST00000599848 SPATA24Q86W54 205 aa23.06■■□□□ 1.28
UPF1-207ENST00000599848 SULF1Q8IWU6 871 aa23.06■■□□□ 1.28
UPF1-207ENST00000599848 PRPF31Q8WWY3 499 aaKnown RBP23.06■■□□□ 1.28
UPF1-207ENST00000599848 RNF34Q969K3 372 aa23.05■■□□□ 1.28
UPF1-207ENST00000599848 CCDC94Q9BW85 323 aaPredicted RBP23.05■■□□□ 1.28
UPF1-207ENST00000599848 SBNO1A3KN83 1393 aa23.05■■□□□ 1.28
UPF1-207ENST00000599848 YWHAEP62258 255 aaKnown RBP23.05■■□□□ 1.28
UPF1-207ENST00000599848 BCS1LQ9Y276 419 aa23.05■■□□□ 1.28
UPF1-207ENST00000599848 EIF2AK4Q9P2K8 1649 aaKnown RBP23.05■■□□□ 1.28
UPF1-207ENST00000599848 PDE1AP54750 535 aa23.05■■□□□ 1.28
UPF1-207ENST00000599848 TBC1D9Q6ZT07 1266 aa23.05■■□□□ 1.28
UPF1-207ENST00000599848 TMC4Q7Z404 712 aa23.05■■□□□ 1.28
UPF1-207ENST00000599848 MIGA1Q8NAN2 632 aa23.05■■□□□ 1.28
UPF1-207ENST00000599848 ZBTB21Q9ULJ3 1066 aa23.05■■□□□ 1.28
UPF1-207ENST00000599848 BIN1O00499 593 aa23.04■■□□□ 1.28
UPF1-207ENST00000599848 ALDH3A1P30838 453 aa23.04■■□□□ 1.28
UPF1-207ENST00000599848 PLCB3Q01970 1234 aa23.04■■□□□ 1.28
UPF1-207ENST00000599848 MTUS1Q9ULD2 1270 aa23.04■■□□□ 1.28
UPF1-207ENST00000599848 ATP6V0A2Q9Y487 856 aa23.04■■□□□ 1.28
UPF1-207ENST00000599848 SLTMQ9NWH9 1034 aaKnown RBP eCLIP23.04■■□□□ 1.283e-7■■■■■ 31
UPF1-207ENST00000599848 AFMP43652 599 aa23.04■■□□□ 1.28
UPF1-207ENST00000599848 CEP135Q66GS9 1140 aa23.04■■□□□ 1.28
UPF1-207ENST00000599848 TFIP11Q9UBB9 837 aaKnown RBP23.04■■□□□ 1.28
UPF1-207ENST00000599848 YEATS2Q9ULM3 1422 aa23.04■■□□□ 1.28
UPF1-207ENST00000599848 HMGB1P1B2RPK0 211 aaPredicted RBP23.04■■□□□ 1.28
UPF1-207ENST00000599848 P4HA1P13674 534 aa23.04■■□□□ 1.28
UPF1-207ENST00000599848 Q6ZUG5 572 aa23.04■■□□□ 1.28
UPF1-207ENST00000599848 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.03■■□□□ 1.284e-6■■■□□ 14.7
UPF1-207ENST00000599848 ATP10BO94823 1461 aa23.03■■□□□ 1.28
UPF1-207ENST00000599848 ERVV-2B6SEH9 535 aa23.03■■□□□ 1.28
UPF1-207ENST00000599848 ZSCAN22P10073 491 aaPredicted RBP23.03■■□□□ 1.28
UPF1-207ENST00000599848 CCNA1P78396 465 aa23.03■■□□□ 1.28
UPF1-207ENST00000599848 CFAP58Q5T655 872 aa23.03■■□□□ 1.28
UPF1-207ENST00000599848 MAATS1Q7Z4T9 603 aa23.03■■□□□ 1.28
UPF1-207ENST00000599848 ARHGEF35A5YM69 484 aa23.03■■□□□ 1.28
UPF1-207ENST00000599848 ITGA6P23229 1130 aa23.03■■□□□ 1.28
UPF1-207ENST00000599848 SP4Q02446 784 aa23.03■■□□□ 1.28
UPF1-207ENST00000599848 ZNF790Q6PG37 636 aa23.03■■□□□ 1.28
UPF1-207ENST00000599848 METTL22Q9BUU2 404 aaPredicted RBP23.03■■□□□ 1.28
UPF1-207ENST00000599848 LIN9Q5TKA1 542 aa23.02■■□□□ 1.28
UPF1-207ENST00000599848 DHX32Q7L7V1 743 aaKnown RBP23.02■■□□□ 1.28
UPF1-207ENST00000599848 LPIN2Q92539 896 aa23.02■■□□□ 1.28
UPF1-207ENST00000599848 WWC3Q9ULE0 1092 aa23.02■■□□□ 1.28
UPF1-207ENST00000599848 CD2APQ9Y5K6 639 aa23.02■■□□□ 1.28
UPF1-207ENST00000599848 SH3BP5O60239 455 aa23.02■■□□□ 1.28
UPF1-207ENST00000599848 SLC1A4P43007 532 aa23.02■■□□□ 1.28
UPF1-207ENST00000599848 PRKAG2Q9UGJ0 569 aa23.02■■□□□ 1.28
UPF1-207ENST00000599848 MBD4O95243 580 aa23.02■■□□□ 1.28
UPF1-207ENST00000599848 ELMSAN1Q6PJG2 1045 aa23.02■■□□□ 1.28
UPF1-207ENST00000599848 HELBQ8NG08 1087 aaPredicted RBP23.02■■□□□ 1.28
UPF1-207ENST00000599848 MEIS3Q99687 375 aa23.02■■□□□ 1.28
UPF1-207ENST00000599848 PTPDC1A2A3K4 754 aa23.01■■□□□ 1.27
UPF1-207ENST00000599848 ZSCAN30Q86W11 494 aa23.01■■□□□ 1.27
UPF1-207ENST00000599848 EYA1Q99502 592 aa23.01■■□□□ 1.27
UPF1-207ENST00000599848 ATP2B4P23634 1241 aa23.01■■□□□ 1.27
UPF1-207ENST00000599848 CCDC50Q8IVM0 306 aa23.01■■□□□ 1.27
UPF1-207ENST00000599848 POLKQ9UBT6 870 aa23.01■■□□□ 1.27
UPF1-207ENST00000599848 POLR3AO14802 1390 aaPredicted RBP23.01■■□□□ 1.27
UPF1-207ENST00000599848 CALUO43852 315 aaPredicted RBP23.01■■□□□ 1.27
UPF1-207ENST00000599848 IWS1Q96ST2 819 aa23.01■■□□□ 1.27
UPF1-207ENST00000599848 ESYT1Q9BSJ8 1104 aa23.01■■□□□ 1.27
UPF1-207ENST00000599848 UBASH3AP57075 661 aa23.01■■□□□ 1.27
UPF1-207ENST00000599848 MRPL50Q8N5N7 158 aaKnown RBP23.01■■□□□ 1.27
UPF1-207ENST00000599848 SPTLC2O15270 562 aa23■■□□□ 1.27
UPF1-207ENST00000599848 KRT86O43790 486 aa23■■□□□ 1.27
UPF1-207ENST00000599848 HSF2BPO75031 334 aa23■■□□□ 1.27
UPF1-207ENST00000599848 RAB11FIP4Q86YS3 637 aa23■■□□□ 1.27
UPF1-207ENST00000599848 TEKT1Q969V4 418 aa23■■□□□ 1.27
UPF1-207ENST00000599848 CGNQ9P2M7 1197 aaKnown RBP23■■□□□ 1.27
UPF1-207ENST00000599848 H0YCG3 227 aa23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms