RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 CST9Q5W186 159 aa23.99■■□□□ 1.43
SHKBP1-221ENST00000599833 ZNF384Q8TF68 577 aa23.99■■□□□ 1.43
SHKBP1-221ENST00000599833 CRKP46108 304 aa23.98■■□□□ 1.43
SHKBP1-221ENST00000599833 HDLBPQ00341 1268 aaKnown RBP23.98■■□□□ 1.43
SHKBP1-221ENST00000599833 CDC37L1Q7L3B6 337 aa23.98■■□□□ 1.43
SHKBP1-221ENST00000599833 AACSQ86V21 672 aa23.98■■□□□ 1.43
SHKBP1-221ENST00000599833 SPATA5Q8NB90 893 aa23.98■■□□□ 1.43
SHKBP1-221ENST00000599833 MRIQ9BWK5 157 aa23.98■■□□□ 1.43
SHKBP1-221ENST00000599833 SCAF8Q9UPN6 1271 aaKnown RBP23.98■■□□□ 1.43
SHKBP1-221ENST00000599833 MYH2Q9UKX2 1941 aa23.98■■□□□ 1.43
SHKBP1-221ENST00000599833 APBB1O00213 710 aa23.97■■□□□ 1.43
SHKBP1-221ENST00000599833 USP48Q86UV5 1035 aa23.97■■□□□ 1.43
SHKBP1-221ENST00000599833 DOCK2Q92608 1830 aa23.97■■□□□ 1.43
SHKBP1-221ENST00000599833 HDAC1Q13547 482 aaPredicted RBP23.96■■□□□ 1.43
SHKBP1-221ENST00000599833 AAMPQ13685 434 aa23.96■■□□□ 1.43
SHKBP1-221ENST00000599833 DLGAP5Q15398 846 aa23.96■■□□□ 1.43
SHKBP1-221ENST00000599833 SMARCA5O60264 1052 aaPredicted RBP23.95■■□□□ 1.42
SHKBP1-221ENST00000599833 UQCRFS1P1P0C7P4 283 aa23.95■■□□□ 1.42
SHKBP1-221ENST00000599833 GORABQ5T7V8 394 aa23.95■■□□□ 1.42
SHKBP1-221ENST00000599833 APOBEC3HQ6NTF7 200 aaKnown RBP23.95■■□□□ 1.42
SHKBP1-221ENST00000599833 KRT26Q7Z3Y9 468 aa23.95■■□□□ 1.42
SHKBP1-221ENST00000599833 DNAJC5GQ8N7S2 189 aa23.95■■□□□ 1.42
SHKBP1-221ENST00000599833 DCPSQ96C86 337 aaKnown RBP23.95■■□□□ 1.42
SHKBP1-221ENST00000599833 MAST2Q6P0Q8 1798 aa23.95■■□□□ 1.42
SHKBP1-221ENST00000599833 DIXDC1Q155Q3 683 aa23.94■■□□□ 1.42
SHKBP1-221ENST00000599833 TBC1D9Q6ZT07 1266 aa23.94■■□□□ 1.42
SHKBP1-221ENST00000599833 CLASRPQ8N2M8 674 aaKnown RBP23.94■■□□□ 1.42
SHKBP1-221ENST00000599833 ZDHHC15Q96MV8 337 aa23.94■■□□□ 1.42
SHKBP1-221ENST00000599833 LRRCC1Q9C099 1032 aa23.94■■□□□ 1.42
SHKBP1-221ENST00000599833 CYP2E1P05181 493 aaPredicted RBP23.93■■□□□ 1.42
SHKBP1-221ENST00000599833 CCDC158Q5M9N0 1113 aa23.93■■□□□ 1.42
SHKBP1-221ENST00000599833 TTC39AQ5SRH9 613 aa23.93■■□□□ 1.42
SHKBP1-221ENST00000599833 HHIPL2Q6UWX4 724 aa23.93■■□□□ 1.42
SHKBP1-221ENST00000599833 SNRKQ9NRH2 765 aa23.93■■□□□ 1.42
SHKBP1-221ENST00000599833 CREBZFQ9NS37 354 aa23.93■■□□□ 1.42
SHKBP1-221ENST00000599833 MAST3O60307 1309 aa23.92■■□□□ 1.42
SHKBP1-221ENST00000599833 LDHBP07195 334 aaKnown RBP23.92■■□□□ 1.42
SHKBP1-221ENST00000599833 ZAP70P43403 619 aa23.92■■□□□ 1.42
SHKBP1-221ENST00000599833 IRX6P78412 446 aaPredicted RBP23.92■■□□□ 1.42
SHKBP1-221ENST00000599833 SPDYE2Q495Y8 402 aa23.92■■□□□ 1.42
SHKBP1-221ENST00000599833 TEKT1Q969V4 418 aa23.92■■□□□ 1.42
SHKBP1-221ENST00000599833 GAKO14976 1311 aa23.91■■□□□ 1.42
SHKBP1-221ENST00000599833 TMEM88BA6NKF7 163 aa23.91■■□□□ 1.42
SHKBP1-221ENST00000599833 CDCA5Q96FF9 252 aa23.91■■□□□ 1.42
SHKBP1-221ENST00000599833 TDRD3Q9H7E2 651 aaKnown RBP23.91■■□□□ 1.42
SHKBP1-221ENST00000599833 DAGLAQ9Y4D2 1042 aa23.91■■□□□ 1.42
SHKBP1-221ENST00000599833 NDUFB9Q9Y6M9 179 aa23.91■■□□□ 1.42
SHKBP1-221ENST00000599833 SSC5DA1L4H1 1573 aa23.91■■□□□ 1.42
SHKBP1-221ENST00000599833 CLRN2A0PK11 232 aa23.9■■□□□ 1.42
SHKBP1-221ENST00000599833 SULF1Q8IWU6 871 aa23.9■■□□□ 1.42
SHKBP1-221ENST00000599833 ZGPATQ8N5A5 531 aaKnown RBP23.9■■□□□ 1.42
SHKBP1-221ENST00000599833 ZNF70Q9UC06 446 aaPredicted RBP23.9■■□□□ 1.42
SHKBP1-221ENST00000599833 IGHDP01880 384 aa23.89■■□□□ 1.41
SHKBP1-221ENST00000599833 MECOMQ03112 1051 aa23.89■■□□□ 1.41
SHKBP1-221ENST00000599833 APOBEC3FQ8IUX4 373 aaKnown RBP23.89■■□□□ 1.41
SHKBP1-221ENST00000599833 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.89■■□□□ 1.41
SHKBP1-221ENST00000599833 NSUN4Q96CB9 384 aaKnown RBP23.89■■□□□ 1.41
SHKBP1-221ENST00000599833 FAM163AQ96GL9 167 aaPredicted RBP23.89■■□□□ 1.41
SHKBP1-221ENST00000599833 PIH1D3Q9NQM4 214 aaKnown RBP23.89■■□□□ 1.41
SHKBP1-221ENST00000599833 ABCF2Q9UG63 623 aa23.89■■□□□ 1.41
SHKBP1-221ENST00000599833 RFX7Q2KHR2 1363 aa23.89■■□□□ 1.41
SHKBP1-221ENST00000599833 SALL3Q9BXA9 1300 aa23.88■■□□□ 1.41
SHKBP1-221ENST00000599833 CELF2O95319 508 aaKnown RBP23.88■■□□□ 1.41
SHKBP1-221ENST00000599833 RBM5P52756 815 aaKnown RBP eCLIP23.88■■□□□ 1.41
SHKBP1-221ENST00000599833 PRAMEF18Q5VWM3 479 aa23.88■■□□□ 1.41
SHKBP1-221ENST00000599833 ANTXR1Q9H6X2 564 aa23.88■■□□□ 1.41
SHKBP1-221ENST00000599833 CNTNAP1P78357 1384 aa23.88■■□□□ 1.41
SHKBP1-221ENST00000599833 IFIT2P09913 472 aaKnown RBP23.87■■□□□ 1.41
SHKBP1-221ENST00000599833 PAPPA2Q9BXP8 1791 aa23.86■■□□□ 1.41
SHKBP1-221ENST00000599833 ERICH6Q7L0X2 663 aa23.86■■□□□ 1.41
SHKBP1-221ENST00000599833 DEFB129Q9H1M3 183 aa23.86■■□□□ 1.41
SHKBP1-221ENST00000599833 TLL2Q9Y6L7 1015 aa23.86■■□□□ 1.41
SHKBP1-221ENST00000599833 CDK5RAP2Q96SN8 1893 aa23.85■■□□□ 1.41
SHKBP1-221ENST00000599833 ATP5JP18859 108 aa23.85■■□□□ 1.41
SHKBP1-221ENST00000599833 CACNB3P54284 484 aa23.85■■□□□ 1.41
SHKBP1-221ENST00000599833 SPTY2D1Q68D10 685 aaPredicted RBP23.85■■□□□ 1.41
SHKBP1-221ENST00000599833 CDC42EP5Q6NZY7 148 aa23.85■■□□□ 1.41
SHKBP1-221ENST00000599833 SAPCD2Q86UD0 394 aa23.85■■□□□ 1.41
SHKBP1-221ENST00000599833 CDAN1Q8IWY9 1227 aa23.85■■□□□ 1.41
SHKBP1-221ENST00000599833 SMC5Q8IY18 1101 aa23.85■■□□□ 1.41
SHKBP1-221ENST00000599833 OTUD7AQ8TE49 926 aaPredicted RBP23.85■■□□□ 1.41
SHKBP1-221ENST00000599833 TEPSINQ96N21 525 aa23.85■■□□□ 1.41
SHKBP1-221ENST00000599833 MROH7-TTC4A0A0A0MT08 1334 aa23.84■■□□□ 1.41
SHKBP1-221ENST00000599833 RASSF10A6NK89 507 aa23.84■■□□□ 1.41
SHKBP1-221ENST00000599833 GPR75-ASB3A0A0A6YYF3 556 aa23.83■■□□□ 1.41
SHKBP1-221ENST00000599833 MYO1BO43795 1136 aa23.83■■□□□ 1.41
SHKBP1-221ENST00000599833 RASA3Q14644 834 aa23.83■■□□□ 1.41
SHKBP1-221ENST00000599833 ADGRA1Q86SQ6 560 aa23.83■■□□□ 1.41
SHKBP1-221ENST00000599833 DZIP1Q86YF9 867 aaKnown RBP23.83■■□□□ 1.41
SHKBP1-221ENST00000599833 GCC1Q96CN9 775 aa23.83■■□□□ 1.41
SHKBP1-221ENST00000599833 ZNF408Q9H9D4 720 aa23.83■■□□□ 1.41
SHKBP1-221ENST00000599833 VEZTQ9HBM0 779 aa23.83■■□□□ 1.41
SHKBP1-221ENST00000599833 PPP2R3BQ9Y5P8 575 aa23.83■■□□□ 1.41
SHKBP1-221ENST00000599833 THSD7BQ9C0I4 1608 aa23.83■■□□□ 1.41
SHKBP1-221ENST00000599833 RHBDL3P58872 404 aa23.82■■□□□ 1.4
SHKBP1-221ENST00000599833 FKBP1CQ5VVH2 108 aa23.82■■□□□ 1.4
SHKBP1-221ENST00000599833 EDC3Q96F86 508 aaKnown RBP23.82■■□□□ 1.4
SHKBP1-221ENST00000599833 FOCADQ5VW36 1801 aa23.82■■□□□ 1.4
SHKBP1-221ENST00000599833 IGSF3O75054 1194 aa23.81■■□□□ 1.4
SHKBP1-221ENST00000599833 NFIAQ12857 509 aa23.81■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms