RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 U3KPZ7 1027 aaPredicted RBP18.27■□□□□ 0.52
TRIM28-209ENST00000597423 MAST3O60307 1309 aa18.26■□□□□ 0.51
TRIM28-209ENST00000597423 AK9Q5TCS8 1911 aa18.26■□□□□ 0.51
TRIM28-209ENST00000597423 AKAP11Q9UKA4 1901 aa18.26■□□□□ 0.51
TRIM28-209ENST00000597423 MAGEB6P1A0A0J9YX57 407 aa18.26■□□□□ 0.51
TRIM28-209ENST00000597423 BAG3O95817 575 aa18.26■□□□□ 0.51
TRIM28-209ENST00000597423 MAP4K1Q92918 833 aa18.26■□□□□ 0.51
TRIM28-209ENST00000597423 SEC62Q99442 399 aaKnown RBP18.26■□□□□ 0.51
TRIM28-209ENST00000597423 DSCC1Q9BVC3 393 aa18.26■□□□□ 0.51
TRIM28-209ENST00000597423 ZNRF3Q9ULT6 936 aa18.26■□□□□ 0.51
TRIM28-209ENST00000597423 DUOX1Q9NRD9 1551 aa18.25■□□□□ 0.51
TRIM28-209ENST00000597423 GPAA1O43292 621 aa18.25■□□□□ 0.51
TRIM28-209ENST00000597423 ANP32AP39687 249 aaKnown RBP18.25■□□□□ 0.51
TRIM28-209ENST00000597423 IL27Q8NEV9 243 aa18.25■□□□□ 0.51
TRIM28-209ENST00000597423 PUS7LQ9H0K6 701 aaKnown RBP18.25■□□□□ 0.51
TRIM28-209ENST00000597423 COL1A1P02452 1464 aaPredicted RBP18.25■□□□□ 0.51
TRIM28-209ENST00000597423 M0R2C6 588 aa18.24■□□□□ 0.51
TRIM28-209ENST00000597423 ZKSCAN1P17029 563 aaPredicted RBP18.24■□□□□ 0.51
TRIM28-209ENST00000597423 PRDX5P30044 214 aa18.24■□□□□ 0.51
TRIM28-209ENST00000597423 ANAPC15P60006 121 aa18.24■□□□□ 0.51
TRIM28-209ENST00000597423 ARHGAP27Q6ZUM4 889 aa18.24■□□□□ 0.51
TRIM28-209ENST00000597423 ZNF589Q86UQ0 364 aaPredicted RBP18.24■□□□□ 0.51
TRIM28-209ENST00000597423 MRIQ9BWK5 157 aa18.24■□□□□ 0.51
TRIM28-209ENST00000597423 NACAP1Q9BZK3 213 aa18.24■□□□□ 0.51
TRIM28-209ENST00000597423 MYO3BQ8WXR4 1341 aa18.23■□□□□ 0.51
TRIM28-209ENST00000597423 RPAP1Q9BWH6 1393 aaPredicted RBP18.23■□□□□ 0.51
TRIM28-209ENST00000597423 PATL2C9JE40 543 aaKnown RBP18.23■□□□□ 0.51
TRIM28-209ENST00000597423 APPP05067 770 aa18.23■□□□□ 0.51
TRIM28-209ENST00000597423 HSPA4P34932 840 aa18.23■□□□□ 0.51
TRIM28-209ENST00000597423 PTH1RQ03431 593 aa18.23■□□□□ 0.51
TRIM28-209ENST00000597423 TNIP1Q15025 636 aa18.23■□□□□ 0.51
TRIM28-209ENST00000597423 SLFNL1Q499Z3 407 aa18.23■□□□□ 0.51
TRIM28-209ENST00000597423 CCDC129Q6ZRS4 1044 aa18.23■□□□□ 0.51
TRIM28-209ENST00000597423 FAM163AQ96GL9 167 aaPredicted RBP18.23■□□□□ 0.51
TRIM28-209ENST00000597423 STRBPQ96SI9 672 aaKnown RBP18.23■□□□□ 0.51
TRIM28-209ENST00000597423 IL25Q9H293 177 aa18.23■□□□□ 0.51
TRIM28-209ENST00000597423 CACNA1SQ13698 1873 aa18.22■□□□□ 0.51
TRIM28-209ENST00000597423 MBD4O95243 580 aa18.22■□□□□ 0.51
TRIM28-209ENST00000597423 CHGBP05060 677 aa18.22■□□□□ 0.51
TRIM28-209ENST00000597423 HSPD1P10809 573 aaKnown RBP18.22■□□□□ 0.51
TRIM28-209ENST00000597423 PLCG2P16885 1265 aa18.22■□□□□ 0.51
TRIM28-209ENST00000597423 DACT2Q5SW24 774 aa18.22■□□□□ 0.51
TRIM28-209ENST00000597423 DDRGK1Q96HY6 314 aa18.22■□□□□ 0.51
TRIM28-209ENST00000597423 RBM8AQ9Y5S9 174 aaKnown RBP18.22■□□□□ 0.51
TRIM28-209ENST00000597423 KIAA1551Q9HCM1 1747 aa18.22■□□□□ 0.51
TRIM28-209ENST00000597423 NFKBIEO00221 500 aa18.21■□□□□ 0.51
TRIM28-209ENST00000597423 MMP14P50281 582 aa18.21■□□□□ 0.51
TRIM28-209ENST00000597423 HDLBPQ00341 1268 aaKnown RBP18.21■□□□□ 0.51
TRIM28-209ENST00000597423 CRNKL1Q9BZJ0 848 aaKnown RBP18.21■□□□□ 0.51
TRIM28-209ENST00000597423 TTF2Q9UNY4 1162 aaKnown RBP18.21■□□□□ 0.51
TRIM28-209ENST00000597423 PPP4CP60510 307 aa18.2■□□□□ 0.5
TRIM28-209ENST00000597423 NECTIN1Q15223 517 aa18.2■□□□□ 0.5
TRIM28-209ENST00000597423 ALX1Q15699 326 aa18.2■□□□□ 0.5
TRIM28-209ENST00000597423 MIGA1Q8NAN2 632 aa18.2■□□□□ 0.5
TRIM28-209ENST00000597423 ARMT1Q9H993 441 aa18.2■□□□□ 0.5
TRIM28-209ENST00000597423 SLC4A4Q9Y6R1 1079 aa18.2■□□□□ 0.5
TRIM28-209ENST00000597423 VIL1P09327 827 aaKnown RBP18.19■□□□□ 0.5
TRIM28-209ENST00000597423 EIF6P56537 245 aaKnown RBP18.19■□□□□ 0.5
TRIM28-209ENST00000597423 KRT32Q14532 448 aa18.19■□□□□ 0.5
TRIM28-209ENST00000597423 GIMAP6Q6P9H5 292 aa18.19■□□□□ 0.5
TRIM28-209ENST00000597423 RSBN1LQ6PCB5 846 aaPredicted RBP18.19■□□□□ 0.5
TRIM28-209ENST00000597423 HHIPL2Q6UWX4 724 aa18.19■□□□□ 0.5
TRIM28-209ENST00000597423 TEKT1Q969V4 418 aa18.19■□□□□ 0.5
TRIM28-209ENST00000597423 KCNQ5Q9NR82 932 aa18.19■□□□□ 0.5
TRIM28-209ENST00000597423 HDAC9Q9UKV0 1011 aa18.19■□□□□ 0.5
TRIM28-209ENST00000597423 MROH7-TTC4A0A0A0MT08 1334 aa18.19■□□□□ 0.5
TRIM28-209ENST00000597423 GPR75-ASB3A0A0A6YYF3 556 aa18.18■□□□□ 0.5
TRIM28-209ENST00000597423 YDJCA8MPS7 323 aa18.18■□□□□ 0.5
TRIM28-209ENST00000597423 RAD17O75943 681 aa18.18■□□□□ 0.5
TRIM28-209ENST00000597423 LMNB1P20700 586 aa18.18■□□□□ 0.5
TRIM28-209ENST00000597423 RABEP1Q15276 862 aa18.18■□□□□ 0.5
TRIM28-209ENST00000597423 IMMTQ16891 758 aaKnown RBP18.18■□□□□ 0.5
TRIM28-209ENST00000597423 CREB3L3Q68CJ9 461 aa18.18■□□□□ 0.5
TRIM28-209ENST00000597423 CIAPIN1Q6FI81 312 aa18.18■□□□□ 0.5
TRIM28-209ENST00000597423 OGFOD1Q8N543 542 aa18.18■□□□□ 0.5
TRIM28-209ENST00000597423 CERS5Q8N5B7 392 aa18.18■□□□□ 0.5
TRIM28-209ENST00000597423 KCNB2Q92953 911 aa18.18■□□□□ 0.5
TRIM28-209ENST00000597423 RIOK1Q9BRS2 568 aaKnown RBP18.18■□□□□ 0.5
TRIM28-209ENST00000597423 AATFQ9NY61 560 aaKnown RBP eCLIP18.18■□□□□ 0.5
TRIM28-209ENST00000597423 F8W031 263 aaPredicted RBP18.17■□□□□ 0.5
TRIM28-209ENST00000597423 ZNF213O14771 459 aa18.17■□□□□ 0.5
TRIM28-209ENST00000597423 FGAP02671 866 aa18.17■□□□□ 0.5
TRIM28-209ENST00000597423 PSMA5P28066 241 aa18.17■□□□□ 0.5
TRIM28-209ENST00000597423 VPS53Q5VIR6 699 aa18.17■□□□□ 0.5
TRIM28-209ENST00000597423 ADGRA1Q86SQ6 560 aa18.17■□□□□ 0.5
TRIM28-209ENST00000597423 LCORLQ8N3X6 602 aa18.17■□□□□ 0.5
TRIM28-209ENST00000597423 AGBL3Q8NEM8 1001 aa18.17■□□□□ 0.5
TRIM28-209ENST00000597423 ZNF384Q8TF68 577 aa18.17■□□□□ 0.5
TRIM28-209ENST00000597423 NAPBQ9H115 298 aa18.17■□□□□ 0.5
TRIM28-209ENST00000597423 ATP8A2Q9NTI2 1148 aa18.17■□□□□ 0.5
TRIM28-209ENST00000597423 SLC27A2O14975 620 aa18.16■□□□□ 0.5
TRIM28-209ENST00000597423 GRIN3BO60391 1043 aa18.16■□□□□ 0.5
TRIM28-209ENST00000597423 TDO2P48775 406 aa18.16■□□□□ 0.5
TRIM28-209ENST00000597423 CXCL9Q07325 125 aa18.16■□□□□ 0.5
TRIM28-209ENST00000597423 DIXDC1Q155Q3 683 aa18.16■□□□□ 0.5
TRIM28-209ENST00000597423 GRIK5Q16478 980 aa18.16■□□□□ 0.5
TRIM28-209ENST00000597423 GPR162Q16538 588 aa18.16■□□□□ 0.5
TRIM28-209ENST00000597423 TSGA10IPQ3SY00 556 aa18.16■□□□□ 0.5
TRIM28-209ENST00000597423 KIAA0825Q8IV33 1275 aa18.16■□□□□ 0.5
TRIM28-209ENST00000597423 IFNL3Q8IZI9 196 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms