RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 LAMB2P55268 1798 aa11.65□□□□□ -0.54
TRIM28-208ENST00000597172 SMARCA5O60264 1052 aaPredicted RBP11.65□□□□□ -0.54
TRIM28-208ENST00000597172 RAB11FIP3O75154 756 aa11.65□□□□□ -0.54
TRIM28-208ENST00000597172 SASH1O94885 1247 aa11.65□□□□□ -0.54
TRIM28-208ENST00000597172 SP3Q02447 781 aa11.65□□□□□ -0.54
TRIM28-208ENST00000597172 NUCB1Q02818 461 aa11.65□□□□□ -0.54
TRIM28-208ENST00000597172 G3BP1Q13283 466 aaKnown RBP eCLIP11.65□□□□□ -0.541e-9■■■□□ 16.8
TRIM28-208ENST00000597172 ANKRD45Q5TZF3 282 aa11.65□□□□□ -0.54
TRIM28-208ENST00000597172 SPRYD7Q5W111 196 aa11.65□□□□□ -0.54
TRIM28-208ENST00000597172 SKAP1Q86WV1 359 aa11.65□□□□□ -0.54
TRIM28-208ENST00000597172 CELF1Q92879 486 aaKnown RBP11.65□□□□□ -0.54
TRIM28-208ENST00000597172 STAP2Q9UGK3 403 aa11.65□□□□□ -0.54
TRIM28-208ENST00000597172 RIPOR2Q9Y4F9 1068 aa11.65□□□□□ -0.54
TRIM28-208ENST00000597172 PTCH2Q9Y6C5 1203 aa11.65□□□□□ -0.54
TRIM28-208ENST00000597172 CACNA1AO00555 2505 aa11.65□□□□□ -0.54
TRIM28-208ENST00000597172 COL4A1P02462 1669 aa11.65□□□□□ -0.55
TRIM28-208ENST00000597172 MANSC4A6NHS7 340 aaPredicted RBP11.64□□□□□ -0.55
TRIM28-208ENST00000597172 EYA2O00167 538 aa11.64□□□□□ -0.55
TRIM28-208ENST00000597172 APBB1O00213 710 aa11.64□□□□□ -0.55
TRIM28-208ENST00000597172 BBOX1O75936 387 aa11.64□□□□□ -0.55
TRIM28-208ENST00000597172 CIAO1O76071 339 aa11.64□□□□□ -0.55
TRIM28-208ENST00000597172 CAP1Q01518 475 aa11.64□□□□□ -0.55
TRIM28-208ENST00000597172 HSP90AB4PQ58FF6 505 aa11.64□□□□□ -0.55
TRIM28-208ENST00000597172 PRAMEF18Q5VWM3 479 aa11.64□□□□□ -0.55
TRIM28-208ENST00000597172 RHPN1Q8TCX5 695 aa11.64□□□□□ -0.55
TRIM28-208ENST00000597172 PDE4AP27815 886 aa11.63□□□□□ -0.55
TRIM28-208ENST00000597172 RPS8P62241 208 aaKnown RBP11.63□□□□□ -0.55
TRIM28-208ENST00000597172 ARHGEF6Q15052 776 aa11.63□□□□□ -0.55
TRIM28-208ENST00000597172 TAF7LQ5H9L4 462 aa11.63□□□□□ -0.55
TRIM28-208ENST00000597172 LDHAL6AQ6ZMR3 332 aa11.63□□□□□ -0.55
TRIM28-208ENST00000597172 DDX46Q7L014 1031 aaKnown RBP11.63□□□□□ -0.55
TRIM28-208ENST00000597172 CHD1LQ86WJ1 897 aa11.63□□□□□ -0.55
TRIM28-208ENST00000597172 DBNDD1Q9H9R9 158 aa11.63□□□□□ -0.55
TRIM28-208ENST00000597172 KCNQ5Q9NR82 932 aa11.63□□□□□ -0.55
TRIM28-208ENST00000597172 FBXO3Q9UK99 471 aa11.63□□□□□ -0.55
TRIM28-208ENST00000597172 MYH3P11055 1940 aa11.62□□□□□ -0.55
TRIM28-208ENST00000597172 IGF2BP3O00425 579 aaKnown RBP eCLIP11.62□□□□□ -0.55
TRIM28-208ENST00000597172 HOXD11P31277 338 aaPredicted RBP11.62□□□□□ -0.55
TRIM28-208ENST00000597172 IL15P40933 162 aaPredicted RBP11.62□□□□□ -0.55
TRIM28-208ENST00000597172 TFCP2Q12800 502 aa11.62□□□□□ -0.55
TRIM28-208ENST00000597172 CRHR2Q13324 411 aa11.62□□□□□ -0.55
TRIM28-208ENST00000597172 ANKRD18AQ8IVF6 992 aa11.62□□□□□ -0.55
TRIM28-208ENST00000597172 SHISA4Q96DD7 197 aa11.62□□□□□ -0.55
TRIM28-208ENST00000597172 KIF1BPQ96EK5 621 aa11.62□□□□□ -0.55
TRIM28-208ENST00000597172 CDC5LQ99459 802 aaKnown RBP11.62□□□□□ -0.55
TRIM28-208ENST00000597172 LRRCC1Q9C099 1032 aa11.62□□□□□ -0.55
TRIM28-208ENST00000597172 LNPKQ9C0E8 428 aa11.62□□□□□ -0.55
TRIM28-208ENST00000597172 BSDC1Q9NW68 430 aaPredicted RBP11.62□□□□□ -0.55
TRIM28-208ENST00000597172 SCAF8Q9UPN6 1271 aaKnown RBP11.62□□□□□ -0.55
TRIM28-208ENST00000597172 NF2P35240 595 aa11.61□□□□□ -0.55
TRIM28-208ENST00000597172 IGHMBP2P38935 993 aaKnown RBP11.61□□□□□ -0.55
TRIM28-208ENST00000597172 OS9Q13438 667 aaPredicted RBP11.61□□□□□ -0.55
TRIM28-208ENST00000597172 GRAPQ13588 217 aa11.61□□□□□ -0.55
TRIM28-208ENST00000597172 WASHC4Q2M389 1173 aa11.61□□□□□ -0.55
TRIM28-208ENST00000597172 ARMC9Q7Z3E5 817 aa11.61□□□□□ -0.55
TRIM28-208ENST00000597172 ERC1Q8IUD2 1116 aa11.61□□□□□ -0.55
TRIM28-208ENST00000597172 VGLL2Q8N8G2 317 aa11.61□□□□□ -0.55
TRIM28-208ENST00000597172 GRAPLQ8TC17 118 aaPredicted RBP11.61□□□□□ -0.55
TRIM28-208ENST00000597172 SH3TC2Q8TF17 1288 aa11.61□□□□□ -0.55
TRIM28-208ENST00000597172 MPHOSPH8Q99549 860 aa11.61□□□□□ -0.55
TRIM28-208ENST00000597172 IL1RAPL2Q9NP60 686 aa11.61□□□□□ -0.55
TRIM28-208ENST00000597172 CNNM1Q9NRU3 951 aa11.61□□□□□ -0.55
TRIM28-208ENST00000597172 VIL1P09327 827 aaKnown RBP11.6□□□□□ -0.55
TRIM28-208ENST00000597172 ZNF280AP59817 542 aaPredicted RBP11.6□□□□□ -0.55
TRIM28-208ENST00000597172 OTUD7BQ6GQQ9 843 aa11.6□□□□□ -0.55
TRIM28-208ENST00000597172 UBE2Q1Q7Z7E8 422 aa11.6□□□□□ -0.55
TRIM28-208ENST00000597172 OTUD7AQ8TE49 926 aaPredicted RBP11.6□□□□□ -0.55
TRIM28-208ENST00000597172 EAF2Q96CJ1 260 aaPredicted RBP11.6□□□□□ -0.55
TRIM28-208ENST00000597172 MINPP1Q9UNW1 487 aa11.6□□□□□ -0.55
TRIM28-208ENST00000597172 TAF1P21675 1872 aa11.59□□□□□ -0.55
TRIM28-208ENST00000597172 RIMBP2O15034 1052 aa11.59□□□□□ -0.55
TRIM28-208ENST00000597172 ECE2O60344 883 aa11.59□□□□□ -0.55
TRIM28-208ENST00000597172 EVI5O60447 810 aa11.59□□□□□ -0.55
TRIM28-208ENST00000597172 CHRNDQ07001 517 aa11.59□□□□□ -0.55
TRIM28-208ENST00000597172 LDLRAD1Q5T700 205 aa11.59□□□□□ -0.55
TRIM28-208ENST00000597172 HELBQ8NG08 1087 aaPredicted RBP11.59□□□□□ -0.55
TRIM28-208ENST00000597172 NKX2-3Q8TAU0 364 aa11.59□□□□□ -0.55
TRIM28-208ENST00000597172 SLC10A4Q96EP9 437 aa11.59□□□□□ -0.55
TRIM28-208ENST00000597172 BCL11AQ9H165 835 aa11.59□□□□□ -0.55
TRIM28-208ENST00000597172 CEP126Q9P2H0 1117 aa11.59□□□□□ -0.55
TRIM28-208ENST00000597172 MROH5Q6ZUA9 1318 aa11.59□□□□□ -0.55
TRIM28-208ENST00000597172 RPTORQ8N122 1335 aa11.59□□□□□ -0.55
TRIM28-208ENST00000597172 SALL3Q9BXA9 1300 aa11.59□□□□□ -0.55
TRIM28-208ENST00000597172 MUC3AQ02505 3323 aa11.58□□□□□ -0.56
TRIM28-208ENST00000597172 SNAP23O00161 211 aa11.58□□□□□ -0.56
TRIM28-208ENST00000597172 TAF5LO75529 589 aa11.58□□□□□ -0.56
TRIM28-208ENST00000597172 PDE8BO95263 885 aa11.58□□□□□ -0.56
TRIM28-208ENST00000597172 TIMM10P62072 90 aa11.58□□□□□ -0.56
TRIM28-208ENST00000597172 PRKG1Q13976 671 aa11.58□□□□□ -0.56
TRIM28-208ENST00000597172 DOK7Q18PE1 504 aa11.58□□□□□ -0.56
TRIM28-208ENST00000597172 LRIT3Q3SXY7 679 aa11.58□□□□□ -0.56
TRIM28-208ENST00000597172 METTL24Q5JXM2 366 aa11.58□□□□□ -0.56
TRIM28-208ENST00000597172 PLEKHM2Q8IWE5 1019 aa11.58□□□□□ -0.56
TRIM28-208ENST00000597172 GPR108Q9NPR9 543 aa11.58□□□□□ -0.56
TRIM28-208ENST00000597172 ZBTB48P10074 688 aaPredicted RBP11.57□□□□□ -0.56
TRIM28-208ENST00000597172 FGFR2P21802 821 aa11.57□□□□□ -0.56
TRIM28-208ENST00000597172 BMP8BP34820 402 aa11.57□□□□□ -0.56
TRIM28-208ENST00000597172 MTFR1Q15390 333 aa11.57□□□□□ -0.56
TRIM28-208ENST00000597172 TNNI3KQ59H18 835 aa11.57□□□□□ -0.56
TRIM28-208ENST00000597172 CLASRPQ8N2M8 674 aaKnown RBP11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms