RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 ZNF408Q9H9D4 720 aa17.9■□□□□ 0.46
VRK3-206ENST00000594090 TLR7Q9NYK1 1049 aaKnown RBP17.9■□□□□ 0.46
VRK3-206ENST00000594090 DBNLQ9UJU6 430 aaKnown RBP17.9■□□□□ 0.46
VRK3-206ENST00000594090 SCAF8Q9UPN6 1271 aaKnown RBP17.9■□□□□ 0.46
VRK3-206ENST00000594090 AOX1Q06278 1338 aa17.9■□□□□ 0.46
VRK3-206ENST00000594090 MYO1BO43795 1136 aa17.89■□□□□ 0.46
VRK3-206ENST00000594090 UQCRFS1P1P0C7P4 283 aa17.89■□□□□ 0.46
VRK3-206ENST00000594090 ZGPATQ8N5A5 531 aaKnown RBP17.89■□□□□ 0.46
VRK3-206ENST00000594090 TEKT1Q969V4 418 aa17.89■□□□□ 0.46
VRK3-206ENST00000594090 KLRG1Q96E93 195 aa17.89■□□□□ 0.46
VRK3-206ENST00000594090 CLRN2A0PK11 232 aa17.89■□□□□ 0.45
VRK3-206ENST00000594090 APBB1O00213 710 aa17.89■□□□□ 0.45
VRK3-206ENST00000594090 RAB11FIP3O75154 756 aa17.89■□□□□ 0.45
VRK3-206ENST00000594090 LDHBP07195 334 aaKnown RBP17.89■□□□□ 0.45
VRK3-206ENST00000594090 MCAMP43121 646 aa17.89■□□□□ 0.45
VRK3-206ENST00000594090 CCDC158Q5M9N0 1113 aa17.89■□□□□ 0.45
VRK3-206ENST00000594090 TTC39AQ5SRH9 613 aa17.89■□□□□ 0.45
VRK3-206ENST00000594090 PI16Q6UXB8 463 aa17.89■□□□□ 0.45
VRK3-206ENST00000594090 CDCA5Q96FF9 252 aa17.89■□□□□ 0.45
VRK3-206ENST00000594090 CCDC8Q9H0W5 538 aaPredicted RBP17.89■□□□□ 0.45
VRK3-206ENST00000594090 IL1RAPL2Q9NP60 686 aa17.89■□□□□ 0.45
VRK3-206ENST00000594090 HMG20BQ9P0W2 317 aa17.89■□□□□ 0.45
VRK3-206ENST00000594090 CNTNAP1P78357 1384 aa17.88■□□□□ 0.45
VRK3-206ENST00000594090 AACSQ86V21 672 aa17.88■□□□□ 0.45
VRK3-206ENST00000594090 SPATA5Q8NB90 893 aa17.88■□□□□ 0.45
VRK3-206ENST00000594090 MRIQ9BWK5 157 aa17.88■□□□□ 0.45
VRK3-206ENST00000594090 ABT1Q9ULW3 272 aaKnown RBP17.88■□□□□ 0.45
VRK3-206ENST00000594090 PCDHB15Q9Y5E8 787 aa17.88■□□□□ 0.45
VRK3-206ENST00000594090 AKAP11Q9UKA4 1901 aa17.87■□□□□ 0.45
VRK3-206ENST00000594090 RASSF10A6NK89 507 aa17.87■□□□□ 0.45
VRK3-206ENST00000594090 SPDYE2Q495Y8 402 aa17.87■□□□□ 0.45
VRK3-206ENST00000594090 HHIPL2Q6UWX4 724 aa17.87■□□□□ 0.45
VRK3-206ENST00000594090 ZDHHC15Q96MV8 337 aa17.87■□□□□ 0.45
VRK3-206ENST00000594090 MKRN1Q9UHC7 482 aaKnown RBP17.87■□□□□ 0.45
VRK3-206ENST00000594090 SUPT16HQ9Y5B9 1047 aaKnown RBP17.87■□□□□ 0.45
VRK3-206ENST00000594090 TLL2Q9Y6L7 1015 aa17.87■□□□□ 0.45
VRK3-206ENST00000594090 CLASRPQ8N2M8 674 aaKnown RBP17.86■□□□□ 0.45
VRK3-206ENST00000594090 ZNF512BQ96KM6 892 aaPredicted RBP17.86■□□□□ 0.45
VRK3-206ENST00000594090 TDRD3Q9H7E2 651 aaKnown RBP17.86■□□□□ 0.45
VRK3-206ENST00000594090 VEZTQ9HBM0 779 aa17.86■□□□□ 0.45
VRK3-206ENST00000594090 ZNF70Q9UC06 446 aaPredicted RBP17.86■□□□□ 0.45
VRK3-206ENST00000594090 ABCF2Q9UG63 623 aa17.86■□□□□ 0.45
VRK3-206ENST00000594090 MAST2Q6P0Q8 1798 aa17.85■□□□□ 0.45
VRK3-206ENST00000594090 PAPPA2Q9BXP8 1791 aa17.85■□□□□ 0.45
VRK3-206ENST00000594090 DIXDC1Q155Q3 683 aa17.85■□□□□ 0.45
VRK3-206ENST00000594090 SAPCD2Q86UD0 394 aa17.85■□□□□ 0.45
VRK3-206ENST00000594090 GBA2Q9HCG7 927 aaPredicted RBP17.85■□□□□ 0.45
VRK3-206ENST00000594090 MYH2Q9UKX2 1941 aa17.84■□□□□ 0.45
VRK3-206ENST00000594090 PRAMEF18Q5VWM3 479 aa17.84■□□□□ 0.45
VRK3-206ENST00000594090 SPTY2D1Q68D10 685 aaPredicted RBP17.84■□□□□ 0.45
VRK3-206ENST00000594090 APOBEC3HQ6NTF7 200 aaKnown RBP17.84■□□□□ 0.45
VRK3-206ENST00000594090 DZIP1Q86YF9 867 aaKnown RBP17.84■□□□□ 0.45
VRK3-206ENST00000594090 DEFB129Q9H1M3 183 aa17.84■□□□□ 0.45
VRK3-206ENST00000594090 DAGLAQ9Y4D2 1042 aa17.84■□□□□ 0.45
VRK3-206ENST00000594090 PPP2R3BQ9Y5P8 575 aa17.84■□□□□ 0.45
VRK3-206ENST00000594090 DEFB115Q30KQ5 88 aa17.83■□□□□ 0.45
VRK3-206ENST00000594090 ERICH6Q7L0X2 663 aa17.83■□□□□ 0.45
VRK3-206ENST00000594090 C2orf69Q8N8R5 385 aa17.83■□□□□ 0.45
VRK3-206ENST00000594090 LRRCC1Q9C099 1032 aa17.83■□□□□ 0.45
VRK3-206ENST00000594090 DCTPP1Q9H773 170 aa17.83■□□□□ 0.45
VRK3-206ENST00000594090 SNRKQ9NRH2 765 aa17.83■□□□□ 0.45
VRK3-206ENST00000594090 TNFAIP1Q13829 316 aa17.82■□□□□ 0.44
VRK3-206ENST00000594090 TBC1D9Q6ZT07 1266 aa17.82■□□□□ 0.44
VRK3-206ENST00000594090 GAKO14976 1311 aa17.82■□□□□ 0.44
VRK3-206ENST00000594090 IFIT2P09913 472 aaKnown RBP17.81■□□□□ 0.44
VRK3-206ENST00000594090 ZAP70P43403 619 aa17.81■□□□□ 0.44
VRK3-206ENST00000594090 MECOMQ03112 1051 aa17.81■□□□□ 0.44
VRK3-206ENST00000594090 AAMPQ13685 434 aa17.81■□□□□ 0.44
VRK3-206ENST00000594090 RASA3Q14644 834 aa17.81■□□□□ 0.44
VRK3-206ENST00000594090 HHIPL1Q96JK4 782 aa17.81■□□□□ 0.44
VRK3-206ENST00000594090 BCL11AQ9H165 835 aa17.81■□□□□ 0.44
VRK3-206ENST00000594090 SSC5DA1L4H1 1573 aa17.81■□□□□ 0.44
VRK3-206ENST00000594090 THSD7BQ9C0I4 1608 aa17.81■□□□□ 0.44
VRK3-206ENST00000594090 TCP10L2B9ZVM9 353 aa17.81■□□□□ 0.44
VRK3-206ENST00000594090 CYP2E1P05181 493 aaPredicted RBP17.81■□□□□ 0.44
VRK3-206ENST00000594090 NF2P35240 595 aa17.81■□□□□ 0.44
VRK3-206ENST00000594090 VEGFBP49765 207 aa17.81■□□□□ 0.44
VRK3-206ENST00000594090 CACNB3P54284 484 aa17.81■□□□□ 0.44
VRK3-206ENST00000594090 HUNKP57058 714 aa17.81■□□□□ 0.44
VRK3-206ENST00000594090 SLF2Q8IX21 1173 aa17.81■□□□□ 0.44
VRK3-206ENST00000594090 JMYQ8N9B5 988 aa17.81■□□□□ 0.44
VRK3-206ENST00000594090 ZNF384Q8TF68 577 aa17.81■□□□□ 0.44
VRK3-206ENST00000594090 TMOD2Q9NZR1 351 aa17.81■□□□□ 0.44
VRK3-206ENST00000594090 MYO5AQ9Y4I1 1855 aaKnown RBP17.8■□□□□ 0.44
VRK3-206ENST00000594090 MROH7-TTC4A0A0A0MT08 1334 aa17.8■□□□□ 0.44
VRK3-206ENST00000594090 SMARCA5O60264 1052 aaPredicted RBP17.8■□□□□ 0.44
VRK3-206ENST00000594090 TNNI2P48788 182 aa17.8■□□□□ 0.44
VRK3-206ENST00000594090 FKBP1BP68106 108 aa17.8■□□□□ 0.44
VRK3-206ENST00000594090 CDC42EP5Q6NZY7 148 aa17.8■□□□□ 0.44
VRK3-206ENST00000594090 PAXIP1Q6ZW49 1069 aaPredicted RBP17.8■□□□□ 0.44
VRK3-206ENST00000594090 EXOC6Q8TAG9 804 aa17.8■□□□□ 0.44
VRK3-206ENST00000594090 DOCK2Q92608 1830 aa17.8■□□□□ 0.44
VRK3-206ENST00000594090 NSUN4Q96CB9 384 aaKnown RBP17.8■□□□□ 0.44
VRK3-206ENST00000594090 RAI14Q9P0K7 980 aa17.8■□□□□ 0.44
VRK3-206ENST00000594090 LRP2BPQ9P2M1 347 aa17.8■□□□□ 0.44
VRK3-206ENST00000594090 CYP4F22Q6NT55 531 aa17.79■□□□□ 0.44
VRK3-206ENST00000594090 FAM163AQ96GL9 167 aaPredicted RBP17.79■□□□□ 0.44
VRK3-206ENST00000594090 CAPNS2Q96L46 248 aa17.79■□□□□ 0.44
VRK3-206ENST00000594090 WDR33Q9C0J8 1336 aaKnown RBP17.78■□□□□ 0.44
VRK3-206ENST00000594090 ECE1P42892 770 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms