RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 BICC1Q9H694 974 aaKnown RBP14.11□□□□□ -0.15
SMAD4-211ENST00000590499 LEMD3Q9Y2U8 911 aa14.11□□□□□ -0.15
SMAD4-211ENST00000590499 CHMP3Q9Y3E7 222 aa14.11□□□□□ -0.15
SMAD4-211ENST00000590499 IRS2Q9Y4H2 1338 aa14.11□□□□□ -0.15
SMAD4-211ENST00000590499 BCAR3O75815 825 aa14.1□□□□□ -0.15
SMAD4-211ENST00000590499 CCDC57Q2TAC2 916 aa14.1□□□□□ -0.15
SMAD4-211ENST00000590499 EAPPQ56P03 285 aaPredicted RBP14.1□□□□□ -0.15
SMAD4-211ENST00000590499 C6orf132Q5T0Z8 1188 aa14.1□□□□□ -0.15
SMAD4-211ENST00000590499 ZNF594Q96JF6 807 aaPredicted RBP14.1□□□□□ -0.15
SMAD4-211ENST00000590499 SEPT9Q9UHD8 586 aaPredicted RBP14.1□□□□□ -0.15
SMAD4-211ENST00000590499 ZNF804BA4D1E1 1349 aa14.1□□□□□ -0.15
SMAD4-211ENST00000590499 PASKQ96RG2 1323 aa14.1□□□□□ -0.15
SMAD4-211ENST00000590499 KLRK1P26718 216 aa14.09□□□□□ -0.15
SMAD4-211ENST00000590499 NBR1Q14596 966 aa14.09□□□□□ -0.15
SMAD4-211ENST00000590499 USP50Q70EL3 339 aaPredicted RBP14.09□□□□□ -0.15
SMAD4-211ENST00000590499 TXNRD3Q86VQ6 643 aa14.09□□□□□ -0.15
SMAD4-211ENST00000590499 DPF2Q92785 391 aa14.09□□□□□ -0.15
SMAD4-211ENST00000590499 ADARB2Q9NS39 739 aaKnown RBP14.09□□□□□ -0.15
SMAD4-211ENST00000590499 SHTN1A0MZ66 631 aa14.08□□□□□ -0.16
SMAD4-211ENST00000590499 VIL1P09327 827 aaKnown RBP14.08□□□□□ -0.16
SMAD4-211ENST00000590499 TRIM27P14373 513 aa14.08□□□□□ -0.16
SMAD4-211ENST00000590499 INTS3Q68E01 1043 aaKnown RBP14.08□□□□□ -0.16
SMAD4-211ENST00000590499 TRAF7Q6Q0C0 670 aa14.08□□□□□ -0.16
SMAD4-211ENST00000590499 PODNQ7Z5L7 613 aa14.08□□□□□ -0.16
SMAD4-211ENST00000590499 SNAP23O00161 211 aa14.07□□□□□ -0.16
SMAD4-211ENST00000590499 RPS12P25398 132 aaKnown RBP14.07□□□□□ -0.16
SMAD4-211ENST00000590499 HTRA3P83110 453 aa14.07□□□□□ -0.16
SMAD4-211ENST00000590499 ATF7IPQ6VMQ6 1270 aa14.07□□□□□ -0.16
SMAD4-211ENST00000590499 LDHAL6AQ6ZMR3 332 aa14.07□□□□□ -0.16
SMAD4-211ENST00000590499 C15orf52Q6ZUT6 534 aaKnown RBP14.07□□□□□ -0.16
SMAD4-211ENST00000590499 DNAJC5GQ8N7S2 189 aa14.07□□□□□ -0.16
SMAD4-211ENST00000590499 CNOT7Q9UIV1 285 aaKnown RBP14.07□□□□□ -0.16
SMAD4-211ENST00000590499 TNNQ9UQP3 1299 aa14.07□□□□□ -0.16
SMAD4-211ENST00000590499 GFRA3O60609 400 aa14.06□□□□□ -0.16
SMAD4-211ENST00000590499 TAF5LO75529 589 aa14.06□□□□□ -0.16
SMAD4-211ENST00000590499 RFX5P48382 616 aaPredicted RBP14.06□□□□□ -0.16
SMAD4-211ENST00000590499 HIRAP54198 1017 aaPredicted RBP14.06□□□□□ -0.16
SMAD4-211ENST00000590499 TAF7LQ5H9L4 462 aa14.06□□□□□ -0.16
SMAD4-211ENST00000590499 MAP1SQ66K74 1059 aaPredicted RBP14.06□□□□□ -0.16
SMAD4-211ENST00000590499 HELBQ8NG08 1087 aaPredicted RBP14.06□□□□□ -0.16
SMAD4-211ENST00000590499 TRPM4Q8TD43 1214 aa14.06□□□□□ -0.16
SMAD4-211ENST00000590499 GMLQ99445 158 aa14.06□□□□□ -0.16
SMAD4-211ENST00000590499 PUS3Q9BZE2 481 aaKnown RBP14.06□□□□□ -0.16
SMAD4-211ENST00000590499 COA1Q9GZY4 146 aa14.06□□□□□ -0.16
SMAD4-211ENST00000590499 RIPOR2Q9Y4F9 1068 aa14.06□□□□□ -0.16
SMAD4-211ENST00000590499 TRPM7Q96QT4 1865 aa14.06□□□□□ -0.16
SMAD4-211ENST00000590499 IPO8O15397 1037 aaKnown RBP14.05□□□□□ -0.16
SMAD4-211ENST00000590499 UBTFL1P0CB47 393 aaPredicted RBP14.05□□□□□ -0.16
SMAD4-211ENST00000590499 RSBN1LQ6PCB5 846 aaPredicted RBP14.05□□□□□ -0.16
SMAD4-211ENST00000590499 CNTROBQ8N137 903 aa14.05□□□□□ -0.16
SMAD4-211ENST00000590499 MEIS3Q99687 375 aa14.05□□□□□ -0.16
SMAD4-211ENST00000590499 CNNM1Q9NRU3 951 aa14.05□□□□□ -0.16
SMAD4-211ENST00000590499 PGAP2Q9UHJ9 254 aa14.05□□□□□ -0.16
SMAD4-211ENST00000590499 TSR3Q9UJK0 312 aaKnown RBP14.05□□□□□ -0.16
SMAD4-211ENST00000590499 POLR2AP24928 1970 aaKnown RBP14.05□□□□□ -0.16
SMAD4-211ENST00000590499 USP17L3A6NCW0 530 aa14.04□□□□□ -0.16
SMAD4-211ENST00000590499 USP17L4A6NCW7 530 aa14.04□□□□□ -0.16
SMAD4-211ENST00000590499 EGFRP00533 1210 aa14.04□□□□□ -0.16
SMAD4-211ENST00000590499 KCNJ4P48050 445 aa14.04□□□□□ -0.16
SMAD4-211ENST00000590499 DACT2Q5SW24 774 aa14.04□□□□□ -0.16
SMAD4-211ENST00000590499 USP17L1Q7RTZ2 530 aa14.04□□□□□ -0.16
SMAD4-211ENST00000590499 VGLL2Q8N8G2 317 aa14.04□□□□□ -0.16
SMAD4-211ENST00000590499 AGBL3Q8NEM8 1001 aa14.04□□□□□ -0.16
SMAD4-211ENST00000590499 KLHDC4Q8TBB5 520 aa14.04□□□□□ -0.16
SMAD4-211ENST00000590499 GRXCR2A6NFK2 248 aa14.03□□□□□ -0.16
SMAD4-211ENST00000590499 H7C1D1 291 aa14.03□□□□□ -0.16
SMAD4-211ENST00000590499 ZNF280AP59817 542 aaPredicted RBP14.03□□□□□ -0.16
SMAD4-211ENST00000590499 LRRC24Q50LG9 513 aa14.03□□□□□ -0.16
SMAD4-211ENST00000590499 ZKSCAN2Q63HK3 967 aa14.03□□□□□ -0.16
SMAD4-211ENST00000590499 SAMD7Q7Z3H4 446 aa14.03□□□□□ -0.16
SMAD4-211ENST00000590499 ZC3H15Q8WU90 426 aaKnown RBP14.03□□□□□ -0.16
SMAD4-211ENST00000590499 FRAT1Q92837 279 aaPredicted RBP14.03□□□□□ -0.16
SMAD4-211ENST00000590499 CD209Q9NNX6 404 aa14.03□□□□□ -0.16
SMAD4-211ENST00000590499 HPS5Q9UPZ3 1129 aa14.03□□□□□ -0.16
SMAD4-211ENST00000590499 LRRFIP2Q9Y608 721 aaKnown RBP14.03□□□□□ -0.16
SMAD4-211ENST00000590499 MROH5Q6ZUA9 1318 aa14.03□□□□□ -0.16
SMAD4-211ENST00000590499 TRIM6-TRIM34B2RNG4 842 aa14.02□□□□□ -0.17
SMAD4-211ENST00000590499 MAP3K7O43318 606 aa14.02□□□□□ -0.17
SMAD4-211ENST00000590499 PTPN12Q05209 780 aaKnown RBP14.02□□□□□ -0.17
SMAD4-211ENST00000590499 UBE4AQ14139 1066 aa14.02□□□□□ -0.17
SMAD4-211ENST00000590499 STRIP1Q5VSL9 837 aa14.02□□□□□ -0.17
SMAD4-211ENST00000590499 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.02□□□□□ -0.17
SMAD4-211ENST00000590499 PLIN1O60240 522 aa14.01□□□□□ -0.17
SMAD4-211ENST00000590499 IL1R1P14778 569 aa14.01□□□□□ -0.17
SMAD4-211ENST00000590499 TBC1D10BQ4KMP7 808 aaPredicted RBP14.01□□□□□ -0.17
SMAD4-211ENST00000590499 CLUAP1Q96AJ1 413 aa14.01□□□□□ -0.17
SMAD4-211ENST00000590499 KLRG1Q96E93 195 aa14.01□□□□□ -0.17
SMAD4-211ENST00000590499 MXD3Q9BW11 206 aa14.01□□□□□ -0.17
SMAD4-211ENST00000590499 HDAC5Q9UQL6 1122 aa14.01□□□□□ -0.17
SMAD4-211ENST00000590499 MYO3BQ8WXR4 1341 aa14□□□□□ -0.17
SMAD4-211ENST00000590499 EYA2O00167 538 aa14□□□□□ -0.17
SMAD4-211ENST00000590499 GNAI3P08754 354 aa14□□□□□ -0.17
SMAD4-211ENST00000590499 FMR1Q06787 632 aaKnown RBP eCLIP14□□□□□ -0.17
SMAD4-211ENST00000590499 MTX1Q13505 466 aa14□□□□□ -0.17
SMAD4-211ENST00000590499 TSR1Q2NL82 804 aaKnown RBP14□□□□□ -0.17
SMAD4-211ENST00000590499 KIF4BQ2VIQ3 1234 aa14□□□□□ -0.17
SMAD4-211ENST00000590499 ATG9AQ7Z3C6 839 aa14□□□□□ -0.17
SMAD4-211ENST00000590499 ZNF804AQ7Z570 1209 aa14□□□□□ -0.17
SMAD4-211ENST00000590499 TMEM57Q8N5G2 664 aa14□□□□□ -0.17
SMAD4-211ENST00000590499 LRCH3Q96II8 777 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms