RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 LARP1BQ659C4 914 aaKnown RBP16.75■□□□□ 0.27
LIG3-205ENST00000585941 FOXD4L4Q8WXT5 416 aaPredicted RBP16.75■□□□□ 0.27
LIG3-205ENST00000585941 RBM17Q96I25 401 aaKnown RBP16.75■□□□□ 0.27
LIG3-205ENST00000585941 NAPBQ9H115 298 aa16.75■□□□□ 0.27
LIG3-205ENST00000585941 RAI14Q9P0K7 980 aa16.75■□□□□ 0.27
LIG3-205ENST00000585941 XDHP47989 1333 aa16.74■□□□□ 0.27
LIG3-205ENST00000585941 A0A0G2JLW4 131 aa16.74■□□□□ 0.27
LIG3-205ENST00000585941 MBD3O95983 291 aa16.74■□□□□ 0.27
LIG3-205ENST00000585941 CYP7A1P22680 504 aa16.74■□□□□ 0.27
LIG3-205ENST00000585941 CSPP1Q1MSJ5 1256 aa16.74■□□□□ 0.27
LIG3-205ENST00000585941 IFNL3Q8IZI9 196 aa16.74■□□□□ 0.27
LIG3-205ENST00000585941 ABCF2Q9UG63 623 aa16.74■□□□□ 0.27
LIG3-205ENST00000585941 MTMR6Q9Y217 621 aa16.74■□□□□ 0.27
LIG3-205ENST00000585941 COL1A1P02452 1464 aaPredicted RBP16.73■□□□□ 0.27
LIG3-205ENST00000585941 PRC1O43663 620 aa16.73■□□□□ 0.27
LIG3-205ENST00000585941 PRPF40AO75400 957 aaKnown RBP16.73■□□□□ 0.27
LIG3-205ENST00000585941 APBA3O96018 575 aa16.73■□□□□ 0.27
LIG3-205ENST00000585941 HMGN5P82970 282 aaKnown RBP16.73■□□□□ 0.27
LIG3-205ENST00000585941 STK3Q13188 491 aa16.73■□□□□ 0.27
LIG3-205ENST00000585941 L1TD1Q5T7N2 865 aaKnown RBP16.73■□□□□ 0.27
LIG3-205ENST00000585941 C15orf52Q6ZUT6 534 aaKnown RBP16.73■□□□□ 0.27
LIG3-205ENST00000585941 TMC4Q7Z404 712 aa16.73■□□□□ 0.27
LIG3-205ENST00000585941 NLGN1Q8N2Q7 840 aa16.73■□□□□ 0.27
LIG3-205ENST00000585941 CNNM2Q9H8M5 875 aa16.73■□□□□ 0.27
LIG3-205ENST00000585941 ARMT1Q9H993 441 aa16.73■□□□□ 0.27
LIG3-205ENST00000585941 TFCP2L1Q9NZI6 479 aa16.73■□□□□ 0.27
LIG3-205ENST00000585941 CACNA1SQ13698 1873 aa16.73■□□□□ 0.27
LIG3-205ENST00000585941 CCDC88AQ3V6T2 1871 aa16.73■□□□□ 0.27
LIG3-205ENST00000585941 TIAM2Q8IVF5 1701 aa16.73■□□□□ 0.27
LIG3-205ENST00000585941 MAST2Q6P0Q8 1798 aa16.73■□□□□ 0.27
LIG3-205ENST00000585941 BBOX1O75936 387 aa16.72■□□□□ 0.27
LIG3-205ENST00000585941 HOXA10P31260 410 aaPredicted RBP16.72■□□□□ 0.27
LIG3-205ENST00000585941 APOBRQ0VD83 1088 aa16.72■□□□□ 0.27
LIG3-205ENST00000585941 SPTY2D1Q68D10 685 aaPredicted RBP16.72■□□□□ 0.27
LIG3-205ENST00000585941 LRRC2Q9BYS8 371 aa16.72■□□□□ 0.27
LIG3-205ENST00000585941 GZF1Q9H116 711 aaPredicted RBP16.72■□□□□ 0.27
LIG3-205ENST00000585941 ANKIB1Q9P2G1 1089 aa16.72■□□□□ 0.27
LIG3-205ENST00000585941 IQSEC3Q9UPP2 1182 aaPredicted RBP16.72■□□□□ 0.27
LIG3-205ENST00000585941 TCHHQ07283 1943 aa16.72■□□□□ 0.27
LIG3-205ENST00000585941 MAGEB6P1A0A0J9YX57 407 aa16.72■□□□□ 0.27
LIG3-205ENST00000585941 KLRG2A4D1S0 409 aaPredicted RBP16.72■□□□□ 0.27
LIG3-205ENST00000585941 GSG1L2A8MUP6 293 aa16.72■□□□□ 0.27
LIG3-205ENST00000585941 POLRMTO00411 1230 aaKnown RBP16.72■□□□□ 0.27
LIG3-205ENST00000585941 DHX16O60231 1041 aaKnown RBP16.72■□□□□ 0.27
LIG3-205ENST00000585941 NCLP19338 710 aaKnown RBP16.72■□□□□ 0.27
LIG3-205ENST00000585941 TMEM87AQ8NBN3 555 aa16.72■□□□□ 0.27
LIG3-205ENST00000585941 SMARCC2Q8TAQ2 1214 aa16.72■□□□□ 0.27
LIG3-205ENST00000585941 AKT1S1Q96B36 256 aa16.72■□□□□ 0.27
LIG3-205ENST00000585941 CRAMP1Q96RY5 1269 aa16.72■□□□□ 0.27
LIG3-205ENST00000585941 SLC4A4Q9Y6R1 1079 aa16.72■□□□□ 0.27
LIG3-205ENST00000585941 VPS37CA5D8V6 355 aaPredicted RBP16.71■□□□□ 0.27
LIG3-205ENST00000585941 PDIA3P30101 505 aaKnown RBP16.71■□□□□ 0.27
LIG3-205ENST00000585941 SCRN1Q12765 414 aa16.71■□□□□ 0.27
LIG3-205ENST00000585941 NAA16Q6N069 864 aaPredicted RBP16.71■□□□□ 0.27
LIG3-205ENST00000585941 LCORLQ8N3X6 602 aa16.71■□□□□ 0.27
LIG3-205ENST00000585941 TMEM87BQ96K49 555 aa16.71■□□□□ 0.27
LIG3-205ENST00000585941 IRS2Q9Y4H2 1338 aa16.71■□□□□ 0.27
LIG3-205ENST00000585941 EP400Q96L91 3159 aa16.71■□□□□ 0.26
LIG3-205ENST00000585941 WTIPA6NIX2 430 aaPredicted RBP16.7■□□□□ 0.26
LIG3-205ENST00000585941 ATP2B4P23634 1241 aa16.7■□□□□ 0.26
LIG3-205ENST00000585941 TDO2P48775 406 aa16.7■□□□□ 0.26
LIG3-205ENST00000585941 DDR1Q08345 913 aa16.7■□□□□ 0.26
LIG3-205ENST00000585941 FAM184AQ8NB25 1140 aa16.7■□□□□ 0.26
LIG3-205ENST00000585941 KRT23Q9C075 422 aa16.7■□□□□ 0.26
LIG3-205ENST00000585941 NBPF3Q9H094 633 aa16.7■□□□□ 0.26
LIG3-205ENST00000585941 RNF41Q9H4P4 317 aaPredicted RBP16.7■□□□□ 0.26
LIG3-205ENST00000585941 EPB41L4AQ9HCS5 686 aaPredicted RBP16.7■□□□□ 0.26
LIG3-205ENST00000585941 DUOX1Q9NRD9 1551 aa16.7■□□□□ 0.26
LIG3-205ENST00000585941 KIAA1551Q9HCM1 1747 aa16.7■□□□□ 0.26
LIG3-205ENST00000585941 NRXN2Q9P2S2 1712 aa16.7■□□□□ 0.26
LIG3-205ENST00000585941 GOLGA6L3A6NEY3 463 aa16.69■□□□□ 0.26
LIG3-205ENST00000585941 GIMAP6Q6P9H5 292 aa16.69■□□□□ 0.26
LIG3-205ENST00000585941 ZNF804AQ7Z570 1209 aa16.69■□□□□ 0.26
LIG3-205ENST00000585941 TBC1D10CQ8IV04 446 aa16.69■□□□□ 0.26
LIG3-205ENST00000585941 WDR66Q8TBY9 1149 aa16.69■□□□□ 0.26
LIG3-205ENST00000585941 MTA3Q9BTC8 594 aa16.69■□□□□ 0.26
LIG3-205ENST00000585941 SALL1Q9NSC2 1324 aa16.69■□□□□ 0.26
LIG3-205ENST00000585941 TNS1Q9HBL0 1735 aaKnown RBP16.69■□□□□ 0.26
LIG3-205ENST00000585941 KLRK1P26718 216 aa16.69■□□□□ 0.26
LIG3-205ENST00000585941 AKNAD1Q5T1N1 836 aa16.69■□□□□ 0.26
LIG3-205ENST00000585941 CHST3Q7LGC8 479 aa16.69■□□□□ 0.26
LIG3-205ENST00000585941 NSUN7Q8NE18 718 aaKnown RBP16.69■□□□□ 0.26
LIG3-205ENST00000585941 ANGEL1Q9UNK9 670 aaKnown RBP16.69■□□□□ 0.26
LIG3-205ENST00000585941 FSD2A1L4K1 749 aa16.68■□□□□ 0.26
LIG3-205ENST00000585941 ANTXR2P58335 489 aa16.68■□□□□ 0.26
LIG3-205ENST00000585941 MFSD6Q6ZSS7 791 aa16.68■□□□□ 0.26
LIG3-205ENST00000585941 MIGA1Q8NAN2 632 aa16.68■□□□□ 0.26
LIG3-205ENST00000585941 STAG1Q8WVM7 1258 aa16.68■□□□□ 0.26
LIG3-205ENST00000585941 NSUN4Q96CB9 384 aaKnown RBP16.68■□□□□ 0.26
LIG3-205ENST00000585941 RIOK1Q9BRS2 568 aaKnown RBP16.68■□□□□ 0.26
LIG3-205ENST00000585941 BRIP1Q9BX63 1249 aa16.68■□□□□ 0.26
LIG3-205ENST00000585941 PODXL2Q9NZ53 605 aa16.68■□□□□ 0.26
LIG3-205ENST00000585941 ANAPC4Q9UJX5 808 aa16.68■□□□□ 0.26
LIG3-205ENST00000585941 LRRC37AA6NMS7 1700 aa16.67■□□□□ 0.26
LIG3-205ENST00000585941 PCP11498 1178 aaKnown RBP16.67■□□□□ 0.26
LIG3-205ENST00000585941 ZNF827Q17R98 1081 aa16.67■□□□□ 0.26
LIG3-205ENST00000585941 RGS22Q8NE09 1264 aa16.67■□□□□ 0.26
LIG3-205ENST00000585941 TDRD7Q8NHU6 1098 aaKnown RBP16.67■□□□□ 0.26
LIG3-205ENST00000585941 NAP1L2Q9ULW6 460 aaPredicted RBP16.67■□□□□ 0.26
LIG3-205ENST00000585941 KLF18A0A0U1RQI7 1052 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms