RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 TMED8Q6PL24 325 aaPredicted RBP13.29□□□□□ -0.28
LIG3-204ENST00000585740 ARHGEF1Q92888 912 aaKnown RBP13.29□□□□□ -0.28
LIG3-204ENST00000585740 AIDAQ96BJ3 306 aa13.29□□□□□ -0.28
LIG3-204ENST00000585740 SRP68Q9UHB9 627 aaKnown RBP13.29□□□□□ -0.28
LIG3-204ENST00000585740 ZNF804BA4D1E1 1349 aa13.29□□□□□ -0.28
LIG3-204ENST00000585740 CARMIL3Q8ND23 1372 aa13.29□□□□□ -0.28
LIG3-204ENST00000585740 UBR3Q6ZT12 1888 aa13.29□□□□□ -0.28
LIG3-204ENST00000585740 TAF1P21675 1872 aa13.28□□□□□ -0.28
LIG3-204ENST00000585740 VPS37CA5D8V6 355 aaPredicted RBP13.28□□□□□ -0.28
LIG3-204ENST00000585740 PATL2C9JE40 543 aaKnown RBP13.28□□□□□ -0.28
LIG3-204ENST00000585740 FOXP2O15409 715 aa13.28□□□□□ -0.28
LIG3-204ENST00000585740 PHF14O94880 888 aa13.28□□□□□ -0.28
LIG3-204ENST00000585740 KCNQ4P56696 695 aa13.28□□□□□ -0.28
LIG3-204ENST00000585740 EVCP57679 992 aa13.28□□□□□ -0.28
LIG3-204ENST00000585740 RPS8P62241 208 aaKnown RBP13.28□□□□□ -0.28
LIG3-204ENST00000585740 CAVIN1Q6NZI2 390 aaKnown RBP13.28□□□□□ -0.28
LIG3-204ENST00000585740 SMARCC2Q8TAQ2 1214 aa13.28□□□□□ -0.28
LIG3-204ENST00000585740 GPT2Q8TD30 523 aa13.28□□□□□ -0.28
LIG3-204ENST00000585740 STRBPQ96SI9 672 aaKnown RBP13.28□□□□□ -0.28
LIG3-204ENST00000585740 GRPEL1Q9HAV7 217 aa13.28□□□□□ -0.28
LIG3-204ENST00000585740 WWC3Q9ULE0 1092 aa13.28□□□□□ -0.28
LIG3-204ENST00000585740 DENND2AQ9ULE3 1009 aa13.28□□□□□ -0.28
LIG3-204ENST00000585740 PDS5AQ29RF7 1337 aaKnown RBP13.28□□□□□ -0.28
LIG3-204ENST00000585740 PNPLA7Q6ZV29 1317 aa13.28□□□□□ -0.28
LIG3-204ENST00000585740 DHX16O60231 1041 aaKnown RBP13.27□□□□□ -0.29
LIG3-204ENST00000585740 BCAMP50895 628 aa13.27□□□□□ -0.29
LIG3-204ENST00000585740 STK3Q13188 491 aa13.27□□□□□ -0.29
LIG3-204ENST00000585740 TTLL5Q6EMB2 1281 aa13.27□□□□□ -0.29
LIG3-204ENST00000585740 USP48Q86UV5 1035 aa13.27□□□□□ -0.29
LIG3-204ENST00000585740 MB21D2Q8IYB1 491 aaPredicted RBP13.27□□□□□ -0.29
LIG3-204ENST00000585740 MAGEB6Q8N7X4 407 aa13.27□□□□□ -0.29
LIG3-204ENST00000585740 FAM184AQ8NB25 1140 aa13.27□□□□□ -0.29
LIG3-204ENST00000585740 NACAP1Q9BZK3 213 aa13.27□□□□□ -0.29
LIG3-204ENST00000585740 MINPP1Q9UNW1 487 aa13.27□□□□□ -0.29
LIG3-204ENST00000585740 TIAM2Q8IVF5 1701 aa13.27□□□□□ -0.29
LIG3-204ENST00000585740 PRC1O43663 620 aa13.26□□□□□ -0.29
LIG3-204ENST00000585740 APPP05067 770 aa13.26□□□□□ -0.29
LIG3-204ENST00000585740 UBE2HP62256 183 aa13.26□□□□□ -0.29
LIG3-204ENST00000585740 KRT85P78386 507 aa13.26□□□□□ -0.29
LIG3-204ENST00000585740 APOBRQ0VD83 1088 aa13.26□□□□□ -0.29
LIG3-204ENST00000585740 SCRN1Q12765 414 aa13.26□□□□□ -0.29
LIG3-204ENST00000585740 COL9A3Q14050 684 aaPredicted RBP13.26□□□□□ -0.29
LIG3-204ENST00000585740 ZSCAN23Q3MJ62 389 aa13.26□□□□□ -0.29
LIG3-204ENST00000585740 C3orf67Q6ZVT6 689 aa13.26□□□□□ -0.29
LIG3-204ENST00000585740 VPS37DQ86XT2 251 aa13.26□□□□□ -0.29
LIG3-204ENST00000585740 RGS22Q8NE09 1264 aa13.26□□□□□ -0.29
LIG3-204ENST00000585740 ZSCAN16Q9H4T2 348 aaPredicted RBP13.26□□□□□ -0.29
LIG3-204ENST00000585740 LRP2BPQ9P2M1 347 aa13.26□□□□□ -0.29
LIG3-204ENST00000585740 MYH15Q9Y2K3 1946 aa13.26□□□□□ -0.29
LIG3-204ENST00000585740 CCDC88AQ3V6T2 1871 aa13.25□□□□□ -0.29
LIG3-204ENST00000585740 GOLGB1Q14789 3259 aaKnown RBP13.25□□□□□ -0.29
LIG3-204ENST00000585740 NPHP1O15259 732 aa13.25□□□□□ -0.29
LIG3-204ENST00000585740 LETM1O95202 739 aaPredicted RBP13.25□□□□□ -0.29
LIG3-204ENST00000585740 XRCC6P12956 609 aaKnown RBP eCLIP13.25□□□□□ -0.29
LIG3-204ENST00000585740 HAND2P61296 217 aa13.25□□□□□ -0.29
LIG3-204ENST00000585740 CELF1Q92879 486 aaKnown RBP13.25□□□□□ -0.29
LIG3-204ENST00000585740 TMEM87BQ96K49 555 aa13.25□□□□□ -0.29
LIG3-204ENST00000585740 LRRC2Q9BYS8 371 aa13.25□□□□□ -0.29
LIG3-204ENST00000585740 NAPBQ9H115 298 aa13.25□□□□□ -0.29
LIG3-204ENST00000585740 CNNM2Q9H8M5 875 aa13.25□□□□□ -0.29
LIG3-204ENST00000585740 MAST2Q6P0Q8 1798 aa13.25□□□□□ -0.29
LIG3-204ENST00000585740 ELP1O95163 1332 aa13.24□□□□□ -0.29
LIG3-204ENST00000585740 H3BQV1 296 aa13.24□□□□□ -0.29
LIG3-204ENST00000585740 MBD4O95243 580 aa13.24□□□□□ -0.29
LIG3-204ENST00000585740 PDIA3P30101 505 aaKnown RBP13.24□□□□□ -0.29
LIG3-204ENST00000585740 NAA16Q6N069 864 aaPredicted RBP13.24□□□□□ -0.29
LIG3-204ENST00000585740 FBXO33Q7Z6M2 555 aa13.24□□□□□ -0.29
LIG3-204ENST00000585740 IFNL3Q8IZI9 196 aa13.24□□□□□ -0.29
LIG3-204ENST00000585740 NSUN7Q8NE18 718 aaKnown RBP13.24□□□□□ -0.29
LIG3-204ENST00000585740 MTA3Q9BTC8 594 aa13.24□□□□□ -0.29
LIG3-204ENST00000585740 SCAND2PQ9GZW5 306 aaPredicted RBP13.24□□□□□ -0.29
LIG3-204ENST00000585740 CNPY2Q9Y2B0 182 aa13.24□□□□□ -0.29
LIG3-204ENST00000585740 COL4A1P02462 1669 aa13.24□□□□□ -0.29
LIG3-204ENST00000585740 KIAA1551Q9HCM1 1747 aa13.23□□□□□ -0.29
LIG3-204ENST00000585740 A0A0G2JLW4 131 aa13.23□□□□□ -0.29
LIG3-204ENST00000585740 SNAP23O00161 211 aa13.23□□□□□ -0.29
LIG3-204ENST00000585740 LRSAM1Q6UWE0 723 aa13.23□□□□□ -0.29
LIG3-204ENST00000585740 CDC37L1Q7L3B6 337 aa13.23□□□□□ -0.29
LIG3-204ENST00000585740 CNBD1Q8NA66 436 aa13.23□□□□□ -0.29
LIG3-204ENST00000585740 KRT23Q9C075 422 aa13.23□□□□□ -0.29
LIG3-204ENST00000585740 TNRC6CQ9HCJ0 1690 aaKnown RBP13.23□□□□□ -0.29
LIG3-204ENST00000585740 PTPDC1A2A3K4 754 aa13.22□□□□□ -0.29
LIG3-204ENST00000585740 FIBPO43427 364 aa13.22□□□□□ -0.29
LIG3-204ENST00000585740 JAK2O60674 1132 aa13.22□□□□□ -0.29
LIG3-204ENST00000585740 CYP7A1P22680 504 aa13.22□□□□□ -0.29
LIG3-204ENST00000585740 GYG1P46976 350 aa13.22□□□□□ -0.29
LIG3-204ENST00000585740 ST5P78524 1137 aa13.22□□□□□ -0.29
LIG3-204ENST00000585740 DNM1Q05193 864 aaKnown RBP13.22□□□□□ -0.29
LIG3-204ENST00000585740 GRAPQ13588 217 aa13.22□□□□□ -0.29
LIG3-204ENST00000585740 NFIXQ14938 502 aa13.22□□□□□ -0.29
LIG3-204ENST00000585740 ZNF827Q17R98 1081 aa13.22□□□□□ -0.29
LIG3-204ENST00000585740 FOXD4L6Q3SYB3 417 aaPredicted RBP13.22□□□□□ -0.29
LIG3-204ENST00000585740 CCDC183Q5T5S1 534 aa13.22□□□□□ -0.29
LIG3-204ENST00000585740 ATL3Q6DD88 541 aa13.22□□□□□ -0.29
LIG3-204ENST00000585740 FOXD4L3Q6VB84 417 aaPredicted RBP13.22□□□□□ -0.29
LIG3-204ENST00000585740 GRAPLQ8TC17 118 aaPredicted RBP13.22□□□□□ -0.29
LIG3-204ENST00000585740 ANP32BQ92688 251 aaKnown RBP13.22□□□□□ -0.29
LIG3-204ENST00000585740 FAM84BQ96KN1 310 aaPredicted RBP13.22□□□□□ -0.29
LIG3-204ENST00000585740 RNF41Q9H4P4 317 aaPredicted RBP13.22□□□□□ -0.29
LIG3-204ENST00000585740 RAI14Q9P0K7 980 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms