RNA–Protein interactions for RNA: ENST00000583438.1

PPP4R1-225, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 4

Gene PPP4R1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-225	ENST00000583438	ZNF34	Q8IZ26	560 aa		10.48	□□□□□ -0.73
PPP4R1-225	ENST00000583438	CNTROB	Q8N137	903 aa		10.48	□□□□□ -0.73
PPP4R1-225	ENST00000583438	EMID1	Q96A84	441 aa	Predicted RBP	10.48	□□□□□ -0.73
PPP4R1-225	ENST00000583438	ZNF428	Q96B54	188 aa		10.48	□□□□□ -0.73
PPP4R1-225	ENST00000583438	PSMD1	Q99460	953 aa		10.48	□□□□□ -0.73
PPP4R1-225	ENST00000583438	C1orf115	Q9H7X2	142 aa		10.48	□□□□□ -0.73
PPP4R1-225	ENST00000583438	IBTK	Q9P2D0	1353 aa	Predicted RBP	10.48	□□□□□ -0.73
PPP4R1-225	ENST00000583438	MYL6B	P14649	208 aa		10.47	□□□□□ -0.73
PPP4R1-225	ENST00000583438	LINC01559	Q495D7	138 aa		10.47	□□□□□ -0.73
PPP4R1-225	ENST00000583438	TPTE2	Q6XPS3	522 aa		10.47	□□□□□ -0.73
PPP4R1-225	ENST00000583438	GPC2	Q8N158	579 aa		10.47	□□□□□ -0.73
PPP4R1-225	ENST00000583438	OCSTAMP	Q9BR26	566 aa		10.47	□□□□□ -0.73
PPP4R1-225	ENST00000583438	PRDM10	Q9NQV6	1147 aa		10.47	□□□□□ -0.73
PPP4R1-225	ENST00000583438	ZNF652	Q9Y2D9	606 aa		10.47	□□□□□ -0.73
PPP4R1-225	ENST00000583438	FBXO45	P0C2W1	286 aa		10.46	□□□□□ -0.73
PPP4R1-225	ENST00000583438	KRT24	Q2M2I5	525 aa		10.46	□□□□□ -0.73
PPP4R1-225	ENST00000583438	WASHC4	Q2M389	1173 aa		10.46	□□□□□ -0.73
PPP4R1-225	ENST00000583438	CYP4F22	Q6NT55	531 aa		10.46	□□□□□ -0.73
PPP4R1-225	ENST00000583438	PDXDC2P	Q6P474	469 aa		10.46	□□□□□ -0.73
PPP4R1-225	ENST00000583438	RTKN2	Q8IZC4	609 aa		10.46	□□□□□ -0.73
PPP4R1-225	ENST00000583438	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	10.46	□□□□□ -0.73
PPP4R1-225	ENST00000583438	DDX21	Q9NR30	783 aa	Known RBP eCLIP	10.46	□□□□□ -0.73
PPP4R1-225	ENST00000583438	RRP7A	Q9Y3A4	280 aa	Known RBP	10.46	□□□□□ -0.73
PPP4R1-225	ENST00000583438	GJA3	Q9Y6H8	435 aa		10.46	□□□□□ -0.73
PPP4R1-225	ENST00000583438	WDR33	Q9C0J8	1336 aa	Known RBP	10.46	□□□□□ -0.73
PPP4R1-225	ENST00000583438	ABCC4	O15439	1325 aa		10.45	□□□□□ -0.74
PPP4R1-225	ENST00000583438	ZBBX	A8MT70	800 aa		10.45	□□□□□ -0.74
PPP4R1-225	ENST00000583438	ERVV-1	B6SEH8	477 aa		10.45	□□□□□ -0.74
PPP4R1-225	ENST00000583438	ZBTB24	O43167	697 aa	Predicted RBP	10.45	□□□□□ -0.74
PPP4R1-225	ENST00000583438	HTATSF1	O43719	755 aa	Known RBP	10.45	□□□□□ -0.74
PPP4R1-225	ENST00000583438	HIRA	P54198	1017 aa	Predicted RBP	10.45	□□□□□ -0.74
PPP4R1-225	ENST00000583438	AOC3	Q16853	763 aa		10.45	□□□□□ -0.74
PPP4R1-225	ENST00000583438	RTF1	Q92541	710 aa	Known RBP	10.45	□□□□□ -0.74
PPP4R1-225	ENST00000583438	ZIC5	Q96T25	663 aa		10.45	□□□□□ -0.74
PPP4R1-225	ENST00000583438	YDJC	A8MPS7	323 aa		10.44	□□□□□ -0.74
PPP4R1-225	ENST00000583438	AOC2	O75106	756 aa		10.44	□□□□□ -0.74
PPP4R1-225	ENST00000583438	EGFR	P00533	1210 aa		10.44	□□□□□ -0.74
PPP4R1-225	ENST00000583438	CTCF	P49711	727 aa	Predicted RBP	10.44	□□□□□ -0.74
PPP4R1-225	ENST00000583438	TRIM32	Q13049	653 aa		10.44	□□□□□ -0.74
PPP4R1-225	ENST00000583438	NR1H3	Q13133	447 aa		10.44	□□□□□ -0.74
PPP4R1-225	ENST00000583438	DEFB115	Q30KQ5	88 aa		10.44	□□□□□ -0.74
PPP4R1-225	ENST00000583438	LIAT1	Q6ZQX7	453 aa		10.44	□□□□□ -0.74
PPP4R1-225	ENST00000583438	SH3BP5L	Q7L8J4	393 aa		10.44	□□□□□ -0.74
PPP4R1-225	ENST00000583438	ZNF511	Q8NB15	262 aa		10.44	□□□□□ -0.74
PPP4R1-225	ENST00000583438	TRPM4	Q8TD43	1214 aa		10.44	□□□□□ -0.74
PPP4R1-225	ENST00000583438	FOXJ1	Q92949	421 aa		10.44	□□□□□ -0.74
PPP4R1-225	ENST00000583438	ABHD8	Q96I13	439 aa		10.44	□□□□□ -0.74
PPP4R1-225	ENST00000583438	CFAP53	Q96M91	514 aa		10.44	□□□□□ -0.74
PPP4R1-225	ENST00000583438	ALDH1B1	P30837	517 aa		10.43	□□□□□ -0.74
PPP4R1-225	ENST00000583438	SH3BP2	P78314	561 aa		10.43	□□□□□ -0.74
PPP4R1-225	ENST00000583438	CXCL9	Q07325	125 aa		10.43	□□□□□ -0.74
PPP4R1-225	ENST00000583438	NFE2L2	Q16236	605 aa		10.43	□□□□□ -0.74
PPP4R1-225	ENST00000583438	CAPNS2	Q96L46	248 aa		10.43	□□□□□ -0.74
PPP4R1-225	ENST00000583438	CRAMP1	Q96RY5	1269 aa		10.43	□□□□□ -0.74
PPP4R1-225	ENST00000583438	HCLS1	P14317	486 aa	Predicted RBP	10.42	□□□□□ -0.74
PPP4R1-225	ENST00000583438	RPIA	P49247	311 aa		10.42	□□□□□ -0.74
PPP4R1-225	ENST00000583438	PTK2	Q05397	1052 aa		10.42	□□□□□ -0.74
PPP4R1-225	ENST00000583438	SH3RF1	Q7Z6J0	888 aa		10.42	□□□□□ -0.74
PPP4R1-225	ENST00000583438	LARGE2	Q8N3Y3	721 aa		10.42	□□□□□ -0.74
PPP4R1-225	ENST00000583438	ADAMTS19	Q8TE59	1207 aa		10.42	□□□□□ -0.74
PPP4R1-225	ENST00000583438	GLIS2	Q9BZE0	524 aa	Predicted RBP	10.42	□□□□□ -0.74
PPP4R1-225	ENST00000583438	GPRC5D	Q9NZD1	345 aa		10.42	□□□□□ -0.74
PPP4R1-225	ENST00000583438	ABT1	Q9ULW3	272 aa	Known RBP	10.42	□□□□□ -0.74
PPP4R1-225	ENST00000583438	NUDC	Q9Y266	331 aa		10.42	□□□□□ -0.74
PPP4R1-225	ENST00000583438	GPSM3	Q9Y4H4	160 aa		10.42	□□□□□ -0.74
PPP4R1-225	ENST00000583438	AKAP11	Q9UKA4	1901 aa		10.42	□□□□□ -0.74
PPP4R1-225	ENST00000583438		A0A1B0GUL6	1792 aa		10.42	□□□□□ -0.74
PPP4R1-225	ENST00000583438	GMPS	P49915	693 aa	Predicted RBP	10.41	□□□□□ -0.74
PPP4R1-225	ENST00000583438	SKOR1	P84550	965 aa		10.41	□□□□□ -0.74
PPP4R1-225	ENST00000583438	C4orf48	Q5BLP8	95 aa		10.41	□□□□□ -0.74
PPP4R1-225	ENST00000583438	SLC10A5	Q5PT55	438 aa		10.41	□□□□□ -0.74
PPP4R1-225	ENST00000583438	NPM2	Q86SE8	214 aa	Known RBP	10.41	□□□□□ -0.74
PPP4R1-225	ENST00000583438	PNMA8A	Q86V59	439 aa	Predicted RBP	10.41	□□□□□ -0.74
PPP4R1-225	ENST00000583438	RPGR	Q92834	1020 aa	Known RBP	10.41	□□□□□ -0.74
PPP4R1-225	ENST00000583438	RTFDC1	Q9BY42	306 aa	Predicted RBP	10.41	□□□□□ -0.74
PPP4R1-225	ENST00000583438	NYX	Q9GZU5	481 aa		10.41	□□□□□ -0.74
PPP4R1-225	ENST00000583438	ATP6V0A2	Q9Y487	856 aa		10.41	□□□□□ -0.74
PPP4R1-225	ENST00000583438	TLL2	Q9Y6L7	1015 aa		10.41	□□□□□ -0.74
PPP4R1-225	ENST00000583438	MYH3	P11055	1940 aa		10.41	□□□□□ -0.74
PPP4R1-225	ENST00000583438	PPIP5K2	O43314	1243 aa		10.4	□□□□□ -0.74
PPP4R1-225	ENST00000583438	GTF2E1	P29083	439 aa	Predicted RBP	10.4	□□□□□ -0.74
PPP4R1-225	ENST00000583438	GRM1	Q13255	1194 aa		10.4	□□□□□ -0.74
PPP4R1-225	ENST00000583438	KIF6	Q6ZMV9	814 aa		10.4	□□□□□ -0.74
PPP4R1-225	ENST00000583438	NLRP10	Q86W26	655 aa		10.4	□□□□□ -0.74
PPP4R1-225	ENST00000583438	GPR101	Q96P66	508 aa	Predicted RBP	10.4	□□□□□ -0.74
PPP4R1-225	ENST00000583438	ARHGAP9	Q9BRR9	750 aa		10.4	□□□□□ -0.74
PPP4R1-225	ENST00000583438	KCNQ5	Q9NR82	932 aa		10.4	□□□□□ -0.74
PPP4R1-225	ENST00000583438	RTL9	Q8NET4	1388 aa		10.39	□□□□□ -0.75
PPP4R1-225	ENST00000583438	ASTN2	O75129	1339 aa	Predicted RBP	10.39	□□□□□ -0.75
PPP4R1-225	ENST00000583438	RAD17	O75943	681 aa		10.39	□□□□□ -0.75
PPP4R1-225	ENST00000583438	EIF2S2	P20042	333 aa	Known RBP	10.39	□□□□□ -0.75
PPP4R1-225	ENST00000583438	EIF6	P56537	245 aa	Known RBP	10.39	□□□□□ -0.75
PPP4R1-225	ENST00000583438	SAPCD2	Q86UD0	394 aa		10.39	□□□□□ -0.75
PPP4R1-225	ENST00000583438	ADAM32	Q8TC27	787 aa		10.39	□□□□□ -0.75
PPP4R1-225	ENST00000583438	JDP2	Q8WYK2	163 aa		10.39	□□□□□ -0.75
PPP4R1-225	ENST00000583438	GLMN	Q92990	594 aa		10.39	□□□□□ -0.75
PPP4R1-225	ENST00000583438	RBM17	Q96I25	401 aa	Known RBP	10.39	□□□□□ -0.75
PPP4R1-225	ENST00000583438	ALG2	Q9H553	416 aa		10.39	□□□□□ -0.75
PPP4R1-225	ENST00000583438	PGAP2	Q9UHJ9	254 aa		10.39	□□□□□ -0.75
PPP4R1-225	ENST00000583438	ERBB4	Q15303	1308 aa		10.38	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms