RNA–Protein interactions for RNA: ENST00000582114.5

CDK5RAP3-223, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 2

Gene CDK5RAP3, Length 647 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-223	ENST00000582114	BCAM	P50895	628 aa		14.6	□□□□□ -0.07
CDK5RAP3-223	ENST00000582114	CACNB3	P54284	484 aa		14.6	□□□□□ -0.07
CDK5RAP3-223	ENST00000582114	CAVIN4	Q5BKX8	364 aa		14.6	□□□□□ -0.07
CDK5RAP3-223	ENST00000582114	VGLL2	Q8N8G2	317 aa		14.6	□□□□□ -0.07
CDK5RAP3-223	ENST00000582114	ELP3	Q9H9T3	547 aa		14.6	□□□□□ -0.07
CDK5RAP3-223	ENST00000582114	SMC4	Q9NTJ3	1288 aa		14.6	□□□□□ -0.07
CDK5RAP3-223	ENST00000582114	TNRC18	O15417	2968 aa	Predicted RBP	14.6	□□□□□ -0.07
CDK5RAP3-223	ENST00000582114	ZBTB48	P10074	688 aa	Predicted RBP	14.59	□□□□□ -0.07
CDK5RAP3-223	ENST00000582114	TNFAIP1	Q13829	316 aa		14.59	□□□□□ -0.07
CDK5RAP3-223	ENST00000582114	PKN2	Q16513	984 aa	Known RBP	14.59	□□□□□ -0.07
CDK5RAP3-223	ENST00000582114	OTOF	Q9HC10	1997 aa		14.59	□□□□□ -0.07
CDK5RAP3-223	ENST00000582114	ALDH1A1	P00352	501 aa		14.58	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	ANKRD13A	Q8IZ07	590 aa		14.58	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	CNKSR2	Q8WXI2	1034 aa		14.58	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	TEPSIN	Q96N21	525 aa		14.58	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	INHBE	P58166	350 aa		14.57	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	PUM3	Q15397	648 aa	Known RBP	14.57	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	FBXO46	Q6PJ61	603 aa	Predicted RBP	14.57	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	TEKT1	Q969V4	418 aa		14.57	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	OPTN	Q96CV9	577 aa		14.57	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	CFHR5	Q9BXR6	569 aa		14.57	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	SIL1	Q9H173	461 aa		14.57	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	IFIT1	P09914	478 aa	Known RBP	14.56	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	RFX5	P48382	616 aa	Predicted RBP	14.56	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	TNNI2	P48788	182 aa		14.56	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	NOM1	Q5C9Z4	860 aa	Known RBP	14.56	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	TBC1D22A	Q8WUA7	517 aa		14.56	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	PTPN18	Q99952	460 aa		14.56	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	TRIM17	Q9Y577	477 aa		14.56	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	EYA2	O00167	538 aa		14.55	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	SLC5A1	P13866	664 aa		14.55	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	FGFR2	P21802	821 aa		14.55	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	CRHR2	Q13324	411 aa		14.55	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	VGLL4	Q14135	290 aa		14.55	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	ALDH1L2	Q3SY69	923 aa		14.55	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	14.55	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	CD99L2	Q8TCZ2	262 aa		14.55	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	NOB1	Q9ULX3	412 aa	Known RBP	14.55	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	UNCX	A6NJT0	531 aa		14.54	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	UBTFL1	P0CB47	393 aa	Predicted RBP	14.54	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	OTUD7B	Q6GQQ9	843 aa		14.54	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	OTOP1	Q7RTM1	612 aa		14.54	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	ATG9A	Q7Z3C6	839 aa		14.54	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	OTUD5	Q96G74	571 aa		14.54	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	TMOD2	Q9NZR1	351 aa		14.54	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	LAMB1	P07942	1786 aa		14.54	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	MYH13	Q9UKX3	1938 aa		14.53	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	MAP3K9	P80192	1104 aa		14.53	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	HDLBP	Q00341	1268 aa	Known RBP	14.53	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	APOBEC3H	Q6NTF7	200 aa	Known RBP	14.53	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	14.53	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	LPIN2	Q92539	896 aa		14.53	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	ZDHHC15	Q96MV8	337 aa		14.53	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	PA2G4	Q9UQ80	394 aa	Known RBP	14.53	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	CSAD	Q9Y600	493 aa		14.53	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	HTT	P42858	3142 aa		14.52	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	MAST3	O60307	1309 aa		14.52	□□□□□ -0.08
CDK5RAP3-223	ENST00000582114	CCL15-CCL14	A0A0B4J2E2	113 aa		14.52	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	CCL15	Q16663	113 aa		14.52	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	TRMT2A	Q8IZ69	625 aa	Known RBP	14.52	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	BRI3BP	Q8WY22	251 aa		14.52	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	MS4A4A	Q96JQ5	239 aa		14.52	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	WRNIP1	Q96S55	665 aa		14.52	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	LRRFIP2	Q9Y608	721 aa	Known RBP	14.52	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	KIF16B	Q96L93	1317 aa		14.51	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	TESPA1	A2RU30	521 aa	Predicted RBP	14.51	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	CAP1	Q01518	475 aa		14.51	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	DIXDC1	Q155Q3	683 aa		14.51	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	ATP2B3	Q16720	1220 aa		14.51	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	MIGA2	Q7L4E1	593 aa		14.51	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	ZKSCAN4	Q969J2	545 aa	Predicted RBP	14.51	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	ERO1A	Q96HE7	468 aa		14.51	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	CEP126	Q9P2H0	1117 aa		14.51	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	CENPF	P49454	3210 aa		14.51	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	PRDX5	P30044	214 aa		14.5	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	SP3	Q02447	781 aa		14.5	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	TCP10	Q12799	353 aa		14.5	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	TAF1C	Q15572	869 aa	Predicted RBP	14.5	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	WDR66	Q8TBY9	1149 aa		14.5	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	MEIS3	Q99687	375 aa		14.5	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	SUGT1	Q9Y2Z0	365 aa		14.5	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	SNCAIP	Q9Y6H5	919 aa		14.5	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	ADORA1	P30542	326 aa		14.49	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	PHKA1	P46020	1223 aa		14.49	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	GTF2A2	P52657	109 aa		14.49	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	HHIPL2	Q6UWX4	724 aa		14.49	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	FAM83A	Q86UY5	434 aa		14.49	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	FAM43A	Q8N2R8	423 aa		14.49	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	MRI	Q9BWK5	157 aa		14.49	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	API5	Q9BZZ5	524 aa	Known RBP	14.49	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	EFCC1	Q9HA90	598 aa		14.49	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	DAGLA	Q9Y4D2	1042 aa		14.49	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	PDE4DIP	Q5VU43	2346 aa		14.49	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	SPDYE5	A6NIY4	337 aa		14.48	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	CIAO1	O76071	339 aa		14.48	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	ECM2	O94769	699 aa	Predicted RBP	14.48	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	SLC34A2	O95436	690 aa		14.48	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	LDHB	P07195	334 aa	Known RBP	14.48	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	INPP5B	P32019	993 aa		14.48	□□□□□ -0.09
CDK5RAP3-223	ENST00000582114	NFIA	Q12857	509 aa		14.48	□□□□□ -0.09

Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms