RNA–Protein interactions for RNA: ENST00000580949.1

PTPRM-213, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 3

Gene PTPRM, Length 687 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-213ENST00000580949 DDX21Q9NR30 783 aaKnown RBP eCLIP7.83□□□□□ -1.16
PTPRM-213ENST00000580949 THRAP3Q9Y2W1 955 aaKnown RBP7.83□□□□□ -1.16
PTPRM-213ENST00000580949 SCN11AQ9UI33 1791 aa7.83□□□□□ -1.16
PTPRM-213ENST00000580949 ADCY9O60503 1353 aa7.83□□□□□ -1.16
PTPRM-213ENST00000580949 SPATA31A6Q5VVP1 1343 aa7.82□□□□□ -1.16
PTPRM-213ENST00000580949 LRP6O75581 1613 aa7.82□□□□□ -1.16
PTPRM-213ENST00000580949 A0A1W2PRU2 124 aa7.82□□□□□ -1.16
PTPRM-213ENST00000580949 PI4KAP2A4QPH2 592 aa7.82□□□□□ -1.16
PTPRM-213ENST00000580949 PTCD1O75127 700 aaKnown RBP7.82□□□□□ -1.16
PTPRM-213ENST00000580949 PIP4K2AP48426 406 aaPredicted RBP7.82□□□□□ -1.16
PTPRM-213ENST00000580949 CLN3Q13286 438 aa7.82□□□□□ -1.16
PTPRM-213ENST00000580949 VPS72Q15906 364 aa7.82□□□□□ -1.16
PTPRM-213ENST00000580949 BEND3Q5T5X7 828 aa7.82□□□□□ -1.16
PTPRM-213ENST00000580949 ZNF787Q6DD87 383 aa7.82□□□□□ -1.16
PTPRM-213ENST00000580949 NBPF10Q6P3W6 841 aaKnown RBP7.82□□□□□ -1.16
PTPRM-213ENST00000580949 SMC5Q8IY18 1101 aa7.82□□□□□ -1.16
PTPRM-213ENST00000580949 NBPF15Q8N660 670 aa7.82□□□□□ -1.16
PTPRM-213ENST00000580949 PI4KAP1Q8N8J0 262 aa7.82□□□□□ -1.16
PTPRM-213ENST00000580949 INSM2Q96T92 566 aaPredicted RBP7.82□□□□□ -1.16
PTPRM-213ENST00000580949 CHMP4AQ9BY43 222 aa7.82□□□□□ -1.16
PTPRM-213ENST00000580949 USP44Q9H0E7 712 aa7.82□□□□□ -1.16
PTPRM-213ENST00000580949 CHMP4BQ9H444 224 aaKnown RBP7.82□□□□□ -1.16
PTPRM-213ENST00000580949 ATG3Q9NT62 314 aa7.82□□□□□ -1.16
PTPRM-213ENST00000580949 HYPKQ9NX55 129 aa7.82□□□□□ -1.16
PTPRM-213ENST00000580949 TMOD3Q9NYL9 352 aa7.82□□□□□ -1.16
PTPRM-213ENST00000580949 PODXL2Q9NZ53 605 aa7.82□□□□□ -1.16
PTPRM-213ENST00000580949 SERPINA10Q9UK55 444 aa7.82□□□□□ -1.16
PTPRM-213ENST00000580949 PARP4Q9UKK3 1724 aaKnown RBP7.82□□□□□ -1.16
PTPRM-213ENST00000580949 ASAP1Q9ULH1 1129 aa7.82□□□□□ -1.16
PTPRM-213ENST00000580949 CCDC9Q9Y3X0 531 aaKnown RBP7.82□□□□□ -1.16
PTPRM-213ENST00000580949 PCDHGA11Q9Y5H2 935 aa7.82□□□□□ -1.16
PTPRM-213ENST00000580949 SHANK3Q9BYB0 1731 aa7.81□□□□□ -1.16
PTPRM-213ENST00000580949 TNS2Q63HR2 1409 aa7.81□□□□□ -1.16
PTPRM-213ENST00000580949 TTLL8A6PVC2 850 aa7.81□□□□□ -1.16
PTPRM-213ENST00000580949 LMOD1P29536 600 aaPredicted RBP7.81□□□□□ -1.16
PTPRM-213ENST00000580949 GTF2IP78347 998 aa7.81□□□□□ -1.16
PTPRM-213ENST00000580949 DDB1Q16531 1140 aa7.81□□□□□ -1.16
PTPRM-213ENST00000580949 KSR2Q6VAB6 950 aa7.81□□□□□ -1.16
PTPRM-213ENST00000580949 XAGE3Q8WTP9 111 aa7.81□□□□□ -1.16
PTPRM-213ENST00000580949 DNAAF4Q8WXU2 420 aa7.81□□□□□ -1.16
PTPRM-213ENST00000580949 CCDC97Q96F63 343 aaPredicted RBP7.81□□□□□ -1.16
PTPRM-213ENST00000580949 ARHGEF10LQ9HCE6 1279 aa7.81□□□□□ -1.16
PTPRM-213ENST00000580949 MKRN1Q9UHC7 482 aaKnown RBP7.81□□□□□ -1.16
PTPRM-213ENST00000580949 PLCH1Q4KWH8 1693 aa7.81□□□□□ -1.16
PTPRM-213ENST00000580949 NRAPQ86VF7 1730 aa7.81□□□□□ -1.16
PTPRM-213ENST00000580949 ATP10DQ9P241 1426 aa7.8□□□□□ -1.16
PTPRM-213ENST00000580949 KCPQ6ZWJ8 1503 aa7.8□□□□□ -1.16
PTPRM-213ENST00000580949 A1BGP04217 495 aa7.8□□□□□ -1.16
PTPRM-213ENST00000580949 MYL6BP14649 208 aa7.8□□□□□ -1.16
PTPRM-213ENST00000580949 SNRPBP14678 240 aaKnown RBP7.8□□□□□ -1.16
PTPRM-213ENST00000580949 GPC1P35052 558 aa7.8□□□□□ -1.16
PTPRM-213ENST00000580949 CTSOP43234 321 aaPredicted RBP7.8□□□□□ -1.16
PTPRM-213ENST00000580949 RGS3P49796 1198 aa7.8□□□□□ -1.16
PTPRM-213ENST00000580949 ATP1A2P50993 1020 aa7.8□□□□□ -1.16
PTPRM-213ENST00000580949 AIMP1Q12904 312 aaKnown RBP7.8□□□□□ -1.16
PTPRM-213ENST00000580949 CEP85Q6P2H3 762 aa7.8□□□□□ -1.16
PTPRM-213ENST00000580949 COPS6Q7L5N1 327 aa7.8□□□□□ -1.16
PTPRM-213ENST00000580949 ANKRD44Q8N8A2 993 aa7.8□□□□□ -1.16
PTPRM-213ENST00000580949 XAGE2Q96GT9 111 aa7.8□□□□□ -1.16
PTPRM-213ENST00000580949 SLC4A9Q96Q91 983 aa7.8□□□□□ -1.16
PTPRM-213ENST00000580949 POLMQ9NP87 494 aaPredicted RBP7.8□□□□□ -1.16
PTPRM-213ENST00000580949 USP21Q9UK80 565 aa7.8□□□□□ -1.16
PTPRM-213ENST00000580949 MAP3K2Q9Y2U5 619 aa7.8□□□□□ -1.16
PTPRM-213ENST00000580949 RBM19Q9Y4C8 960 aaKnown RBP7.8□□□□□ -1.16
PTPRM-213ENST00000580949 GLI3P10071 1580 aa7.8□□□□□ -1.16
PTPRM-213ENST00000580949 BCL9O00512 1426 aa7.79□□□□□ -1.16
PTPRM-213ENST00000580949 MEN1O00255 615 aa7.79□□□□□ -1.16
PTPRM-213ENST00000580949 IL2RAP01589 272 aa7.79□□□□□ -1.16
PTPRM-213ENST00000580949 RNF144AP50876 292 aaPredicted RBP7.79□□□□□ -1.16
PTPRM-213ENST00000580949 SCNN1DP51172 638 aa7.79□□□□□ -1.16
PTPRM-213ENST00000580949 NUCB1Q02818 461 aa7.79□□□□□ -1.16
PTPRM-213ENST00000580949 RPAP2Q8IXW5 612 aaPredicted RBP7.79□□□□□ -1.16
PTPRM-213ENST00000580949 NLRP3Q96P20 1036 aa7.79□□□□□ -1.16
PTPRM-213ENST00000580949 ESYT1Q9BSJ8 1104 aa7.79□□□□□ -1.16
PTPRM-213ENST00000580949 SRCIN1Q9C0H9 1055 aa7.79□□□□□ -1.16
PTPRM-213ENST00000580949 DCTPP1Q9H773 170 aa7.79□□□□□ -1.16
PTPRM-213ENST00000580949 ETNK1Q9HBU6 452 aa7.79□□□□□ -1.16
PTPRM-213ENST00000580949 TOGARAM1Q9Y4F4 1720 aa7.78□□□□□ -1.16
PTPRM-213ENST00000580949 VIRMAQ69YN4 1812 aaKnown RBP7.78□□□□□ -1.16
PTPRM-213ENST00000580949 MAN1A2O60476 641 aa7.78□□□□□ -1.16
PTPRM-213ENST00000580949 GNAI2P04899 355 aa7.78□□□□□ -1.16
PTPRM-213ENST00000580949 IGKV5-2P06315 115 aa7.78□□□□□ -1.16
PTPRM-213ENST00000580949 GNAI3P08754 354 aa7.78□□□□□ -1.16
PTPRM-213ENST00000580949 NBPF7P0C2Y1 421 aaPredicted RBP7.78□□□□□ -1.16
PTPRM-213ENST00000580949 GDF10P55107 478 aa7.78□□□□□ -1.16
PTPRM-213ENST00000580949 CWF19L2Q2TBE0 894 aaKnown RBP7.78□□□□□ -1.16
PTPRM-213ENST00000580949 FOXD4L5Q5VV16 416 aaPredicted RBP7.78□□□□□ -1.16
PTPRM-213ENST00000580949 TTLL7Q6ZT98 887 aa7.78□□□□□ -1.16
PTPRM-213ENST00000580949 DNAJC10Q8IXB1 793 aa7.78□□□□□ -1.16
PTPRM-213ENST00000580949 CNKSR1Q969H4 720 aa7.78□□□□□ -1.16
PTPRM-213ENST00000580949 BACH2Q9BYV9 841 aa7.78□□□□□ -1.16
PTPRM-213ENST00000580949 RAB6BQ9NRW1 208 aa7.78□□□□□ -1.16
PTPRM-213ENST00000580949 DNMT3LQ9UJW3 386 aa7.78□□□□□ -1.16
PTPRM-213ENST00000580949 HRH3Q9Y5N1 445 aa7.78□□□□□ -1.16
PTPRM-213ENST00000580949 LRRFIP2Q9Y608 721 aaKnown RBP7.78□□□□□ -1.16
PTPRM-213ENST00000580949 AFF2P51816 1311 aa7.78□□□□□ -1.16
PTPRM-213ENST00000580949 C5P01031 1676 aa7.77□□□□□ -1.17
PTPRM-213ENST00000580949 PXDNLA1KZ92 1463 aa7.77□□□□□ -1.17
PTPRM-213ENST00000580949 PNMA6EA0A0J9YXQ4 647 aa7.77□□□□□ -1.17
PTPRM-213ENST00000580949 KCNQ2O43526 872 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms