RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 FILIP1Q7Z7B0 1213 aa12.24□□□□□ -0.45
TOP3A-209ENST00000580095 DZIP3Q86Y13 1208 aaKnown RBP12.24□□□□□ -0.45
TOP3A-209ENST00000580095 TDRD7Q8NHU6 1098 aaKnown RBP12.24□□□□□ -0.45
TOP3A-209ENST00000580095 CACTINQ8WUQ7 758 aaKnown RBP12.24□□□□□ -0.45
TOP3A-209ENST00000580095 SPTLC3Q9NUV7 552 aa12.24□□□□□ -0.45
TOP3A-209ENST00000580095 BECN2A8MW95 431 aa12.23□□□□□ -0.45
TOP3A-209ENST00000580095 TERF1P54274 439 aa12.23□□□□□ -0.45
TOP3A-209ENST00000580095 CTDSPL2Q05D32 466 aa12.23□□□□□ -0.45
TOP3A-209ENST00000580095 FAM160A1Q05DH4 1040 aa12.23□□□□□ -0.45
TOP3A-209ENST00000580095 IQCB1Q15051 598 aa12.23□□□□□ -0.45
TOP3A-209ENST00000580095 SMAP1Q8IYB5 467 aaPredicted RBP12.23□□□□□ -0.45
TOP3A-209ENST00000580095 ENGASEQ8NFI3 743 aa12.23□□□□□ -0.45
TOP3A-209ENST00000580095 ZFYP08048 801 aaPredicted RBP12.23□□□□□ -0.45
TOP3A-209ENST00000580095 ADD2P35612 726 aa12.23□□□□□ -0.45
TOP3A-209ENST00000580095 ZSCAN25Q6NSZ9 544 aa12.23□□□□□ -0.45
TOP3A-209ENST00000580095 PLA2G4DQ86XP0 818 aa12.23□□□□□ -0.45
TOP3A-209ENST00000580095 PLCD3Q8N3E9 789 aa12.23□□□□□ -0.45
TOP3A-209ENST00000580095 AOPEPQ8N6M6 819 aa12.23□□□□□ -0.45
TOP3A-209ENST00000580095 FBXO18Q8NFZ0 1043 aa12.23□□□□□ -0.45
TOP3A-209ENST00000580095 ZKSCAN3Q9BRR0 538 aa12.23□□□□□ -0.45
TOP3A-209ENST00000580095 PRKAB2O43741 272 aa12.22□□□□□ -0.45
TOP3A-209ENST00000580095 PDE8BO95263 885 aa12.22□□□□□ -0.45
TOP3A-209ENST00000580095 PDE6AP16499 860 aa12.22□□□□□ -0.45
TOP3A-209ENST00000580095 CDC27P30260 824 aa12.22□□□□□ -0.45
TOP3A-209ENST00000580095 RRP12Q5JTH9 1297 aaKnown RBP12.22□□□□□ -0.45
TOP3A-209ENST00000580095 CMTR1Q8N1G2 835 aaKnown RBP12.22□□□□□ -0.45
TOP3A-209ENST00000580095 MYRIPQ8NFW9 859 aa12.22□□□□□ -0.45
TOP3A-209ENST00000580095 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.22□□□□□ -0.451e-6■■■■□ 21.2
TOP3A-209ENST00000580095 TOMM22Q9NS69 142 aa12.22□□□□□ -0.45
TOP3A-209ENST00000580095 NEDD4P46934 1319 aa12.22□□□□□ -0.45
TOP3A-209ENST00000580095 TRDNQ13061 729 aa12.22□□□□□ -0.45
TOP3A-209ENST00000580095 SMIM5Q71RC9 77 aa12.22□□□□□ -0.45
TOP3A-209ENST00000580095 VGLL2Q8N8G2 317 aa12.22□□□□□ -0.45
TOP3A-209ENST00000580095 LINC00301Q8NCQ3 95 aa12.22□□□□□ -0.45
TOP3A-209ENST00000580095 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.22□□□□□ -0.45
TOP3A-209ENST00000580095 ARMT1Q9H993 441 aa12.22□□□□□ -0.45
TOP3A-209ENST00000580095 LAMB4A4D0S4 1761 aa12.22□□□□□ -0.45
TOP3A-209ENST00000580095 NUP188Q5SRE5 1749 aa12.22□□□□□ -0.45
TOP3A-209ENST00000580095 LAMA4Q16363 1823 aa12.21□□□□□ -0.45
TOP3A-209ENST00000580095 SMIM22K7EJ46 135 aa12.21□□□□□ -0.45
TOP3A-209ENST00000580095 DYNC1I1O14576 645 aa12.21□□□□□ -0.45
TOP3A-209ENST00000580095 LRRFIP1Q32MZ4 808 aaKnown RBP12.21□□□□□ -0.45
TOP3A-209ENST00000580095 DPCR1Q3MIW9 517 aa12.21□□□□□ -0.45
TOP3A-209ENST00000580095 NFXL1Q6ZNB6 911 aa12.21□□□□□ -0.45
TOP3A-209ENST00000580095 MAGEB6Q8N7X4 407 aa12.21□□□□□ -0.45
TOP3A-209ENST00000580095 MRPS27Q92552 414 aaKnown RBP12.21□□□□□ -0.45
TOP3A-209ENST00000580095 KCNQ4P56696 695 aa12.21□□□□□ -0.45
TOP3A-209ENST00000580095 STX1AQ16623 288 aa12.21□□□□□ -0.45
TOP3A-209ENST00000580095 MYSM1Q5VVJ2 828 aa12.21□□□□□ -0.45
TOP3A-209ENST00000580095 DHX40Q8IX18 779 aaKnown RBP12.21□□□□□ -0.45
TOP3A-209ENST00000580095 FMR1NBQ8N0W7 255 aaPredicted RBP12.21□□□□□ -0.45
TOP3A-209ENST00000580095 MIGA1Q8NAN2 632 aa12.21□□□□□ -0.45
TOP3A-209ENST00000580095 AIDAQ96BJ3 306 aa12.21□□□□□ -0.45
TOP3A-209ENST00000580095 PLA2G12BQ9BX93 195 aa12.21□□□□□ -0.45
TOP3A-209ENST00000580095 TEX13AQ9BXU3 409 aaPredicted RBP12.21□□□□□ -0.45
TOP3A-209ENST00000580095 TACC3Q9Y6A5 838 aa12.21□□□□□ -0.45
TOP3A-209ENST00000580095 RIOK3O14730 519 aaKnown RBP12.21□□□□□ -0.46
TOP3A-209ENST00000580095 SPTLC2O15270 562 aa12.21□□□□□ -0.46
TOP3A-209ENST00000580095 MBD4O95243 580 aa12.21□□□□□ -0.46
TOP3A-209ENST00000580095 ADAMTS2O95450 1211 aa12.21□□□□□ -0.46
TOP3A-209ENST00000580095 BCAMP50895 628 aa12.21□□□□□ -0.46
TOP3A-209ENST00000580095 RASGRF1Q13972 1273 aa12.21□□□□□ -0.46
TOP3A-209ENST00000580095 PTPN21Q16825 1174 aa12.21□□□□□ -0.46
TOP3A-209ENST00000580095 SUSD4Q5VX71 490 aa12.21□□□□□ -0.46
TOP3A-209ENST00000580095 SYNE3Q6ZMZ3 975 aa12.21□□□□□ -0.46
TOP3A-209ENST00000580095 ZNF710Q8N1W2 664 aa12.21□□□□□ -0.46
TOP3A-209ENST00000580095 ABCC6O95255 1503 aa12.21□□□□□ -0.46
TOP3A-209ENST00000580095 NHSL1Q5SYE7 1610 aa12.2□□□□□ -0.46
TOP3A-209ENST00000580095 WDHD1O75717 1129 aaPredicted RBP12.2□□□□□ -0.46
TOP3A-209ENST00000580095 METAP2P50579 478 aaKnown RBP eCLIP12.2□□□□□ -0.46
TOP3A-209ENST00000580095 ZNF592Q92610 1267 aa12.2□□□□□ -0.46
TOP3A-209ENST00000580095 ALG1Q9BT22 464 aa12.2□□□□□ -0.46
TOP3A-209ENST00000580095 RTEL1Q9NZ71 1219 aa12.2□□□□□ -0.46
TOP3A-209ENST00000580095 USP27XA6NNY8 438 aa12.2□□□□□ -0.46
TOP3A-209ENST00000580095 EXOC5O00471 708 aa12.2□□□□□ -0.46
TOP3A-209ENST00000580095 EVCP57679 992 aa12.2□□□□□ -0.46
TOP3A-209ENST00000580095 KIF23Q02241 960 aaPredicted RBP12.2□□□□□ -0.46
TOP3A-209ENST00000580095 SPECC1Q5M775 1068 aa12.2□□□□□ -0.46
TOP3A-209ENST00000580095 CLIC6Q96NY7 704 aa12.2□□□□□ -0.46
TOP3A-209ENST00000580095 EPB41L4AQ9HCS5 686 aaPredicted RBP12.2□□□□□ -0.46
TOP3A-209ENST00000580095 ANGEL1Q9UNK9 670 aaKnown RBP12.2□□□□□ -0.46
TOP3A-209ENST00000580095 VGLL3A8MV65 326 aa12.19□□□□□ -0.46
TOP3A-209ENST00000580095 PDE8AO60658 829 aa12.19□□□□□ -0.46
TOP3A-209ENST00000580095 GNL2Q13823 731 aaKnown RBP12.19□□□□□ -0.46
TOP3A-209ENST00000580095 TRMT1Q9NXH9 659 aaKnown RBP12.19□□□□□ -0.46
TOP3A-209ENST00000580095 MROH7-TTC4A0A0A0MT08 1334 aa12.19□□□□□ -0.46
TOP3A-209ENST00000580095 TOGARAM1Q9Y4F4 1720 aa12.19□□□□□ -0.46
TOP3A-209ENST00000580095 DHX16O60231 1041 aaKnown RBP12.19□□□□□ -0.46
TOP3A-209ENST00000580095 ADALQ6DHV7 355 aa12.19□□□□□ -0.46
TOP3A-209ENST00000580095 APOA5Q6Q788 366 aa12.19□□□□□ -0.46
TOP3A-209ENST00000580095 STRBPQ96SI9 672 aaKnown RBP12.19□□□□□ -0.46
TOP3A-209ENST00000580095 UBR2Q8IWV8 1755 aa12.19□□□□□ -0.46
TOP3A-209ENST00000580095 PARP4Q9UKK3 1724 aaKnown RBP12.19□□□□□ -0.46
TOP3A-209ENST00000580095 NAA30Q147X3 362 aaPredicted RBP12.18□□□□□ -0.46
TOP3A-209ENST00000580095 TMEM67Q5HYA8 995 aa12.18□□□□□ -0.46
TOP3A-209ENST00000580095 VPS37DQ86XT2 251 aa12.18□□□□□ -0.46
TOP3A-209ENST00000580095 SPATA5Q8NB90 893 aa12.18□□□□□ -0.46
TOP3A-209ENST00000580095 MPHOSPH8Q99549 860 aa12.18□□□□□ -0.46
TOP3A-209ENST00000580095 ZSWIM5Q9P217 1185 aa12.18□□□□□ -0.46
TOP3A-209ENST00000580095 GOLGB1Q14789 3259 aaKnown RBP12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms