RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 MYO1BO43795 1136 aa23.76■■□□□ 1.39
SS18-208ENST00000577751 RAB11FIP3O75154 756 aa23.76■■□□□ 1.39
SS18-208ENST00000577751 UQCRFS1P1P0C7P4 283 aa23.76■■□□□ 1.39
SS18-208ENST00000577751 PRDX5P30044 214 aa23.76■■□□□ 1.39
SS18-208ENST00000577751 APOBEC3FQ8IUX4 373 aaKnown RBP23.76■■□□□ 1.39
SS18-208ENST00000577751 TEKT1Q969V4 418 aa23.76■■□□□ 1.39
SS18-208ENST00000577751 KIF1BPQ96EK5 621 aa23.76■■□□□ 1.39
SS18-208ENST00000577751 CDCA5Q96FF9 252 aa23.76■■□□□ 1.39
SS18-208ENST00000577751 CRBNQ96SW2 442 aa23.76■■□□□ 1.39
SS18-208ENST00000577751 DBNLQ9UJU6 430 aaKnown RBP23.76■■□□□ 1.39
SS18-208ENST00000577751 SCAF8Q9UPN6 1271 aaKnown RBP23.76■■□□□ 1.39
SS18-208ENST00000577751 AKAP11Q9UKA4 1901 aa23.75■■□□□ 1.39
SS18-208ENST00000577751 RASSF10A6NK89 507 aa23.75■■□□□ 1.39
SS18-208ENST00000577751 CCDC158Q5M9N0 1113 aa23.75■■□□□ 1.39
SS18-208ENST00000577751 HHIPL2Q6UWX4 724 aa23.75■■□□□ 1.39
SS18-208ENST00000577751 ZGPATQ8N5A5 531 aaKnown RBP23.75■■□□□ 1.39
SS18-208ENST00000577751 ZNF512BQ96KM6 892 aaPredicted RBP23.75■■□□□ 1.39
SS18-208ENST00000577751 ZDHHC15Q96MV8 337 aa23.75■■□□□ 1.39
SS18-208ENST00000577751 CCDC8Q9H0W5 538 aaPredicted RBP23.75■■□□□ 1.39
SS18-208ENST00000577751 ZNF408Q9H9D4 720 aa23.75■■□□□ 1.39
SS18-208ENST00000577751 TLL2Q9Y6L7 1015 aa23.75■■□□□ 1.39
SS18-208ENST00000577751 CNTNAP1P78357 1384 aa23.75■■□□□ 1.39
SS18-208ENST00000577751 LDHBP07195 334 aaKnown RBP23.74■■□□□ 1.39
SS18-208ENST00000577751 MCAMP43121 646 aa23.74■■□□□ 1.39
SS18-208ENST00000577751 SPDYE2Q495Y8 402 aa23.74■■□□□ 1.39
SS18-208ENST00000577751 SAPCD2Q86UD0 394 aa23.74■■□□□ 1.39
SS18-208ENST00000577751 SPATA5Q8NB90 893 aa23.74■■□□□ 1.39
SS18-208ENST00000577751 TLR7Q9NYK1 1049 aaKnown RBP23.74■■□□□ 1.39
SS18-208ENST00000577751 CLRN2A0PK11 232 aa23.73■■□□□ 1.39
SS18-208ENST00000577751 TDRD3Q9H7E2 651 aaKnown RBP23.73■■□□□ 1.39
SS18-208ENST00000577751 IL1RAPL2Q9NP60 686 aa23.73■■□□□ 1.39
SS18-208ENST00000577751 MKRN1Q9UHC7 482 aaKnown RBP23.73■■□□□ 1.39
SS18-208ENST00000577751 ABT1Q9ULW3 272 aaKnown RBP23.73■■□□□ 1.39
SS18-208ENST00000577751 PCDHB15Q9Y5E8 787 aa23.73■■□□□ 1.39
SS18-208ENST00000577751 DEFB115Q30KQ5 88 aa23.72■■□□□ 1.39
SS18-208ENST00000577751 TTC39AQ5SRH9 613 aa23.72■■□□□ 1.39
SS18-208ENST00000577751 PI16Q6UXB8 463 aa23.72■■□□□ 1.39
SS18-208ENST00000577751 DEFB129Q9H1M3 183 aa23.72■■□□□ 1.39
SS18-208ENST00000577751 ZNF70Q9UC06 446 aaPredicted RBP23.72■■□□□ 1.39
SS18-208ENST00000577751 PRAMEF18Q5VWM3 479 aa23.71■■□□□ 1.39
SS18-208ENST00000577751 APOBEC3HQ6NTF7 200 aaKnown RBP23.71■■□□□ 1.39
SS18-208ENST00000577751 AACSQ86V21 672 aa23.71■■□□□ 1.39
SS18-208ENST00000577751 CLASRPQ8N2M8 674 aaKnown RBP23.71■■□□□ 1.39
SS18-208ENST00000577751 JMYQ8N9B5 988 aa23.71■■□□□ 1.39
SS18-208ENST00000577751 DCTPP1Q9H773 170 aa23.71■■□□□ 1.39
SS18-208ENST00000577751 GBA2Q9HCG7 927 aaPredicted RBP23.71■■□□□ 1.39
SS18-208ENST00000577751 ABCF2Q9UG63 623 aa23.71■■□□□ 1.39
SS18-208ENST00000577751 APBB1O00213 710 aa23.7■■□□□ 1.38
SS18-208ENST00000577751 SPTY2D1Q68D10 685 aaPredicted RBP23.7■■□□□ 1.38
SS18-208ENST00000577751 HHIPL1Q96JK4 782 aa23.7■■□□□ 1.38
SS18-208ENST00000577751 SUPT16HQ9Y5B9 1047 aaKnown RBP23.7■■□□□ 1.38
SS18-208ENST00000577751 PPP2R3BQ9Y5P8 575 aa23.7■■□□□ 1.38
SS18-208ENST00000577751 MYH2Q9UKX2 1941 aa23.69■■□□□ 1.38
SS18-208ENST00000577751 DIXDC1Q155Q3 683 aa23.69■■□□□ 1.38
SS18-208ENST00000577751 C2orf69Q8N8R5 385 aa23.69■■□□□ 1.38
SS18-208ENST00000577751 VEZTQ9HBM0 779 aa23.69■■□□□ 1.38
SS18-208ENST00000577751 DAGLAQ9Y4D2 1042 aa23.69■■□□□ 1.38
SS18-208ENST00000577751 TBC1D9Q6ZT07 1266 aa23.68■■□□□ 1.38
SS18-208ENST00000577751 FAM163AQ96GL9 167 aaPredicted RBP23.68■■□□□ 1.38
SS18-208ENST00000577751 VEGFBP49765 207 aa23.67■■□□□ 1.38
SS18-208ENST00000577751 FKBP1BP68106 108 aa23.67■■□□□ 1.38
SS18-208ENST00000577751 AAMPQ13685 434 aa23.67■■□□□ 1.38
SS18-208ENST00000577751 ERICH6Q7L0X2 663 aa23.67■■□□□ 1.38
SS18-208ENST00000577751 ZNF384Q8TF68 577 aa23.67■■□□□ 1.38
SS18-208ENST00000577751 SNRKQ9NRH2 765 aa23.67■■□□□ 1.38
SS18-208ENST00000577751 PAPPA2Q9BXP8 1791 aa23.67■■□□□ 1.38
SS18-208ENST00000577751 GAKO14976 1311 aa23.66■■□□□ 1.38
SS18-208ENST00000577751 CYP2E1P05181 493 aaPredicted RBP23.66■■□□□ 1.38
SS18-208ENST00000577751 TNFAIP1Q13829 316 aa23.66■■□□□ 1.38
SS18-208ENST00000577751 RASA3Q14644 834 aa23.66■■□□□ 1.38
SS18-208ENST00000577751 LRRCC1Q9C099 1032 aa23.66■■□□□ 1.38
SS18-208ENST00000577751 ZAP70P43403 619 aa23.65■■□□□ 1.38
SS18-208ENST00000577751 HUNKP57058 714 aa23.65■■□□□ 1.38
SS18-208ENST00000577751 MECOMQ03112 1051 aa23.65■■□□□ 1.38
SS18-208ENST00000577751 FKBP1CQ5VVH2 108 aa23.65■■□□□ 1.38
SS18-208ENST00000577751 DZIP1Q86YF9 867 aaKnown RBP23.65■■□□□ 1.38
SS18-208ENST00000577751 SLF2Q8IX21 1173 aa23.65■■□□□ 1.38
SS18-208ENST00000577751 MYO5AQ9Y4I1 1855 aaKnown RBP23.64■■□□□ 1.38
SS18-208ENST00000577751 IFIT2P09913 472 aaKnown RBP23.64■■□□□ 1.37
SS18-208ENST00000577751 NF2P35240 595 aa23.64■■□□□ 1.37
SS18-208ENST00000577751 NSUN4Q96CB9 384 aaKnown RBP23.64■■□□□ 1.37
SS18-208ENST00000577751 WDR33Q9C0J8 1336 aaKnown RBP23.63■■□□□ 1.37
SS18-208ENST00000577751 SSC5DA1L4H1 1573 aa23.63■■□□□ 1.37
SS18-208ENST00000577751 TCP10L2B9ZVM9 353 aa23.63■■□□□ 1.37
SS18-208ENST00000577751 IGSF3O75054 1194 aa23.63■■□□□ 1.37
SS18-208ENST00000577751 ECE1P42892 770 aa23.63■■□□□ 1.37
SS18-208ENST00000577751 CYP4F22Q6NT55 531 aa23.63■■□□□ 1.37
SS18-208ENST00000577751 CDC42EP5Q6NZY7 148 aa23.63■■□□□ 1.37
SS18-208ENST00000577751 CAPNS2Q96L46 248 aa23.63■■□□□ 1.37
SS18-208ENST00000577751 TEPSINQ96N21 525 aa23.63■■□□□ 1.37
SS18-208ENST00000577751 TNNI2P48788 182 aa23.62■■□□□ 1.37
SS18-208ENST00000577751 CACNB3P54284 484 aa23.62■■□□□ 1.37
SS18-208ENST00000577751 NBPF12Q5TAG4 269 aaPredicted RBP23.62■■□□□ 1.37
SS18-208ENST00000577751 FAM83AQ86UY5 434 aa23.62■■□□□ 1.37
SS18-208ENST00000577751 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.62■■□□□ 1.37
SS18-208ENST00000577751 TMOD2Q9NZR1 351 aa23.62■■□□□ 1.37
SS18-208ENST00000577751 LRP2BPQ9P2M1 347 aa23.62■■□□□ 1.37
SS18-208ENST00000577751 MROH7-TTC4A0A0A0MT08 1334 aa23.61■■□□□ 1.37
SS18-208ENST00000577751 SMARCA5O60264 1052 aaPredicted RBP23.61■■□□□ 1.37
SS18-208ENST00000577751 SUPT20HL1Q3ZLR7 823 aa23.61■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms