RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 TRDNQ13061 729 aa11.79□□□□□ -0.52
VPS53-220ENST00000576149 SASS6Q6UVJ0 657 aa11.79□□□□□ -0.52
VPS53-220ENST00000576149 MPNDQ8N594 471 aa11.79□□□□□ -0.52
VPS53-220ENST00000576149 UTP14AQ9BVJ6 771 aaKnown RBP11.79□□□□□ -0.52
VPS53-220ENST00000576149 CBX8Q9HC52 389 aa11.79□□□□□ -0.52
VPS53-220ENST00000576149 CAMTA2O94983 1202 aa11.79□□□□□ -0.52
VPS53-220ENST00000576149 LUZP1Q86V48 1076 aa11.79□□□□□ -0.52
VPS53-220ENST00000576149 TBC1D10CQ8IV04 446 aa11.79□□□□□ -0.52
VPS53-220ENST00000576149 CCAR1Q8IX12 1150 aaKnown RBP11.79□□□□□ -0.52
VPS53-220ENST00000576149 SPATA5Q8NB90 893 aa11.79□□□□□ -0.52
VPS53-220ENST00000576149 ZNF830Q96NB3 372 aaPredicted RBP11.79□□□□□ -0.52
VPS53-220ENST00000576149 STRBPQ96SI9 672 aaKnown RBP11.79□□□□□ -0.52
VPS53-220ENST00000576149 ARAP2Q8WZ64 1704 aa11.79□□□□□ -0.52
VPS53-220ENST00000576149 LOC102724428A0A0B4J2F2 783 aa11.78□□□□□ -0.52
VPS53-220ENST00000576149 APPP05067 770 aa11.78□□□□□ -0.52
VPS53-220ENST00000576149 SIK1P57059 783 aa11.78□□□□□ -0.52
VPS53-220ENST00000576149 SNW1Q13573 536 aaKnown RBP11.78□□□□□ -0.52
VPS53-220ENST00000576149 PARP10Q53GL7 1025 aa11.78□□□□□ -0.52
VPS53-220ENST00000576149 FBXO18Q8NFZ0 1043 aa11.78□□□□□ -0.52
VPS53-220ENST00000576149 C8orf76Q96K31 380 aa11.78□□□□□ -0.52
VPS53-220ENST00000576149 MPHOSPH8Q99549 860 aa11.78□□□□□ -0.52
VPS53-220ENST00000576149 TTC12Q9H892 705 aaPredicted RBP11.78□□□□□ -0.52
VPS53-220ENST00000576149 RTEL1Q9NZ71 1219 aa11.78□□□□□ -0.52
VPS53-220ENST00000576149 ORC3Q9UBD5 711 aaPredicted RBP11.78□□□□□ -0.52
VPS53-220ENST00000576149 CPLX1O14810 134 aa11.78□□□□□ -0.52
VPS53-220ENST00000576149 CTAGE5O15320 804 aa11.78□□□□□ -0.52
VPS53-220ENST00000576149 CAVIN2O95810 425 aa11.78□□□□□ -0.52
VPS53-220ENST00000576149 ALX1Q15699 326 aa11.78□□□□□ -0.52
VPS53-220ENST00000576149 MARCH10Q8NA82 808 aaPredicted RBP11.78□□□□□ -0.52
VPS53-220ENST00000576149 RGS22Q8NE09 1264 aa11.78□□□□□ -0.52
VPS53-220ENST00000576149 PIBF1Q8WXW3 757 aa11.78□□□□□ -0.52
VPS53-220ENST00000576149 AIDAQ96BJ3 306 aa11.78□□□□□ -0.52
VPS53-220ENST00000576149 ACSBG1Q96GR2 724 aa11.78□□□□□ -0.52
VPS53-220ENST00000576149 GOLPH3LQ9H4A5 285 aa11.78□□□□□ -0.52
VPS53-220ENST00000576149 SEC31BQ9NQW1 1179 aa11.78□□□□□ -0.52
VPS53-220ENST00000576149 DENND2AQ9ULE3 1009 aa11.78□□□□□ -0.52
VPS53-220ENST00000576149 ANGEL1Q9UNK9 670 aaKnown RBP11.78□□□□□ -0.52
VPS53-220ENST00000576149 ZMYM6O95789 1325 aa11.77□□□□□ -0.52
VPS53-220ENST00000576149 FAM177BA6PVY3 158 aa11.77□□□□□ -0.52
VPS53-220ENST00000576149 ADAMTS2O95450 1211 aa11.77□□□□□ -0.52
VPS53-220ENST00000576149 ITPK1Q13572 414 aa11.77□□□□□ -0.52
VPS53-220ENST00000576149 RASGRF1Q13972 1273 aa11.77□□□□□ -0.52
VPS53-220ENST00000576149 OTUD7BQ6GQQ9 843 aa11.77□□□□□ -0.52
VPS53-220ENST00000576149 CYB5R4Q7L1T6 521 aa11.77□□□□□ -0.52
VPS53-220ENST00000576149 ENGASEQ8NFI3 743 aa11.77□□□□□ -0.52
VPS53-220ENST00000576149 TDRD7Q8NHU6 1098 aaKnown RBP11.77□□□□□ -0.52
VPS53-220ENST00000576149 NKX2-3Q8TAU0 364 aa11.77□□□□□ -0.52
VPS53-220ENST00000576149 R3HCC1Q9Y3T6 440 aaKnown RBP11.77□□□□□ -0.52
VPS53-220ENST00000576149 RTL9Q8NET4 1388 aa11.77□□□□□ -0.53
VPS53-220ENST00000576149 SH2B2O14492 632 aaPredicted RBP11.77□□□□□ -0.53
VPS53-220ENST00000576149 TPM3P06753 285 aa11.77□□□□□ -0.53
VPS53-220ENST00000576149 ZNF165P49910 485 aa11.77□□□□□ -0.53
VPS53-220ENST00000576149 CCDC152Q4G0S7 254 aa11.77□□□□□ -0.53
VPS53-220ENST00000576149 CCDC73Q6ZRK6 1079 aa11.77□□□□□ -0.53
VPS53-220ENST00000576149 RREB1Q92766 1687 aa11.77□□□□□ -0.53
VPS53-220ENST00000576149 NRAPQ86VF7 1730 aa11.76□□□□□ -0.53
VPS53-220ENST00000576149 MYO5AQ9Y4I1 1855 aaKnown RBP11.76□□□□□ -0.53
VPS53-220ENST00000576149 A0A0G2JS52 829 aa11.76□□□□□ -0.53
VPS53-220ENST00000576149 PATL2C9JE40 543 aaKnown RBP11.76□□□□□ -0.53
VPS53-220ENST00000576149 SNAP23O00161 211 aa11.76□□□□□ -0.53
VPS53-220ENST00000576149 NTSR2O95665 410 aa11.76□□□□□ -0.53
VPS53-220ENST00000576149 ME1P48163 572 aa11.76□□□□□ -0.53
VPS53-220ENST00000576149 FAM160A1Q05DH4 1040 aa11.76□□□□□ -0.53
VPS53-220ENST00000576149 MAP3K12Q12852 859 aa11.76□□□□□ -0.53
VPS53-220ENST00000576149 BRAPQ7Z569 592 aa11.76□□□□□ -0.53
VPS53-220ENST00000576149 RAB11FIP4Q86YS3 637 aa11.76□□□□□ -0.53
VPS53-220ENST00000576149 DNAJC25Q9H1X3 360 aa11.76□□□□□ -0.53
VPS53-220ENST00000576149 B4E1Z4 1266 aa11.76□□□□□ -0.53
VPS53-220ENST00000576149 ADALQ6DHV7 355 aa11.76□□□□□ -0.53
VPS53-220ENST00000576149 MAGEB6Q8N7X4 407 aa11.76□□□□□ -0.53
VPS53-220ENST00000576149 LINC00301Q8NCQ3 95 aa11.76□□□□□ -0.53
VPS53-220ENST00000576149 TMEM87BQ96K49 555 aa11.76□□□□□ -0.53
VPS53-220ENST00000576149 POLR3EQ9NVU0 708 aa11.76□□□□□ -0.53
VPS53-220ENST00000576149 PCDHA7Q9UN72 937 aa11.76□□□□□ -0.53
VPS53-220ENST00000576149 NIP7Q9Y221 180 aaKnown RBP eCLIP11.76□□□□□ -0.53
VPS53-220ENST00000576149 CICQ96RK0 1608 aaPredicted RBP11.75□□□□□ -0.53
VPS53-220ENST00000576149 A0A1W2PQ27 194 aa11.75□□□□□ -0.53
VPS53-220ENST00000576149 A0A1W2PQ64 194 aa11.75□□□□□ -0.53
VPS53-220ENST00000576149 A0A1W2PQD8 194 aa11.75□□□□□ -0.53
VPS53-220ENST00000576149 GOLGA6L6A8MZA4 724 aa11.75□□□□□ -0.53
VPS53-220ENST00000576149 KINO60870 393 aaKnown RBP11.75□□□□□ -0.53
VPS53-220ENST00000576149 MBD4O95243 580 aa11.75□□□□□ -0.53
VPS53-220ENST00000576149 IGHMBP2P38935 993 aaKnown RBP11.75□□□□□ -0.53
VPS53-220ENST00000576149 METAP2P50579 478 aaKnown RBP eCLIP11.75□□□□□ -0.53
VPS53-220ENST00000576149 IFNL3Q8IZI9 196 aa11.75□□□□□ -0.53
VPS53-220ENST00000576149 FSIP1Q8NA03 581 aa11.75□□□□□ -0.53
VPS53-220ENST00000576149 IGDCC4Q8TDY8 1250 aa11.75□□□□□ -0.53
VPS53-220ENST00000576149 ZFP91Q96JP5 570 aaPredicted RBP11.75□□□□□ -0.53
VPS53-220ENST00000576149 EPB41L4AQ9HCS5 686 aaPredicted RBP11.75□□□□□ -0.53
VPS53-220ENST00000576149 C4AP0C0L4 1744 aa11.75□□□□□ -0.53
VPS53-220ENST00000576149 C4BP0C0L5 1744 aa11.75□□□□□ -0.53
VPS53-220ENST00000576149 NEDD4P46934 1319 aa11.75□□□□□ -0.53
VPS53-220ENST00000576149 SPATA31A5Q5VU36 1347 aa11.75□□□□□ -0.53
VPS53-220ENST00000576149 SPATA31A7Q8IWB4 1347 aa11.75□□□□□ -0.53
VPS53-220ENST00000576149 YEATS4O95619 227 aa11.75□□□□□ -0.53
VPS53-220ENST00000576149 POLR3DP05423 398 aaPredicted RBP11.75□□□□□ -0.53
VPS53-220ENST00000576149 NOLC1Q14978 699 aaKnown RBP eCLIP11.75□□□□□ -0.53
VPS53-220ENST00000576149 MYSM1Q5VVJ2 828 aa11.75□□□□□ -0.53
VPS53-220ENST00000576149 APOA5Q6Q788 366 aa11.75□□□□□ -0.53
VPS53-220ENST00000576149 SPC24Q8NBT2 197 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms