RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 RDH13Q8NBN7 331 aa8.58□□□□□ -1.04
VPS53-217ENST00000575100 CEP89Q96ST8 783 aa8.58□□□□□ -1.04
VPS53-217ENST00000575100 MTFR1LQ9H019 292 aa8.58□□□□□ -1.04
VPS53-217ENST00000575100 AVENQ9NQS1 362 aaPredicted RBP8.58□□□□□ -1.04
VPS53-217ENST00000575100 SNTG2Q9NY99 539 aa8.58□□□□□ -1.04
VPS53-217ENST00000575100 SIRPGQ9P1W8 387 aa8.58□□□□□ -1.04
VPS53-217ENST00000575100 LY75O60449 1722 aa8.57□□□□□ -1.04
VPS53-217ENST00000575100 SHANK3Q9BYB0 1731 aa8.57□□□□□ -1.04
VPS53-217ENST00000575100 DIAPH1O60610 1272 aaKnown RBP8.57□□□□□ -1.04
VPS53-217ENST00000575100 GNA15P30679 374 aa8.57□□□□□ -1.04
VPS53-217ENST00000575100 HOXC9P31274 260 aa8.57□□□□□ -1.04
VPS53-217ENST00000575100 EXOSC10Q01780 885 aaKnown RBP8.57□□□□□ -1.04
VPS53-217ENST00000575100 ATP2B2Q01814 1243 aa8.57□□□□□ -1.04
VPS53-217ENST00000575100 RASA3Q14644 834 aa8.57□□□□□ -1.04
VPS53-217ENST00000575100 WDR43Q15061 677 aaKnown RBP eCLIP8.57□□□□□ -1.04
VPS53-217ENST00000575100 CFAP53Q96M91 514 aa8.57□□□□□ -1.04
VPS53-217ENST00000575100 MPHOSPH6Q99547 160 aaKnown RBP8.57□□□□□ -1.04
VPS53-217ENST00000575100 KANSL2Q9H9L4 492 aa8.57□□□□□ -1.04
VPS53-217ENST00000575100 HOMER2Q9NSB8 354 aa8.57□□□□□ -1.04
VPS53-217ENST00000575100 MAP3K20Q9NYL2 800 aaKnown RBP8.57□□□□□ -1.04
VPS53-217ENST00000575100 NRBP1Q9UHY1 535 aa8.57□□□□□ -1.04
VPS53-217ENST00000575100 NOD1Q9Y239 953 aa8.57□□□□□ -1.04
VPS53-217ENST00000575100 ERBB3P21860 1342 aa8.57□□□□□ -1.04
VPS53-217ENST00000575100 FLT4P35916 1363 aa8.57□□□□□ -1.04
VPS53-217ENST00000575100 GPR182O15218 404 aa8.57□□□□□ -1.04
VPS53-217ENST00000575100 AMPHP49418 695 aa8.57□□□□□ -1.04
VPS53-217ENST00000575100 ALKBH8Q96BT7 664 aaKnown RBP8.57□□□□□ -1.04
VPS53-217ENST00000575100 ZNF500O60304 480 aaPredicted RBP8.56□□□□□ -1.04
VPS53-217ENST00000575100 U2AF1L5P0DN76 240 aaPredicted RBP8.56□□□□□ -1.04
VPS53-217ENST00000575100 MASP1P48740 699 aa8.56□□□□□ -1.04
VPS53-217ENST00000575100 U2AF1Q01081 240 aaKnown RBP eCLIP8.56□□□□□ -1.04
VPS53-217ENST00000575100 COL26A1Q96A83 441 aa8.56□□□□□ -1.04
VPS53-217ENST00000575100 PURBQ96QR8 312 aaKnown RBP8.56□□□□□ -1.04
VPS53-217ENST00000575100 FAM129BQ96TA1 746 aa8.56□□□□□ -1.04
VPS53-217ENST00000575100 SYT17Q9BSW7 474 aa8.56□□□□□ -1.04
VPS53-217ENST00000575100 ZNF408Q9H9D4 720 aa8.56□□□□□ -1.04
VPS53-217ENST00000575100 DOT1LQ8TEK3 1739 aa8.56□□□□□ -1.04
VPS53-217ENST00000575100 TTLL13PA6NNM8 815 aa8.55□□□□□ -1.04
VPS53-217ENST00000575100 C6orf229H3BNL8 230 aa8.55□□□□□ -1.04
VPS53-217ENST00000575100 PLIN1O60240 522 aa8.55□□□□□ -1.04
VPS53-217ENST00000575100 HMOX1P09601 288 aa8.55□□□□□ -1.04
VPS53-217ENST00000575100 CD53P19397 219 aa8.55□□□□□ -1.04
VPS53-217ENST00000575100 NOS2P35228 1153 aa8.55□□□□□ -1.04
VPS53-217ENST00000575100 POU5F1BQ06416 359 aa8.55□□□□□ -1.04
VPS53-217ENST00000575100 LMOD3Q0VAK6 560 aa8.55□□□□□ -1.04
VPS53-217ENST00000575100 PAK2Q13177 524 aa8.55□□□□□ -1.04
VPS53-217ENST00000575100 TTC39BQ5VTQ0 682 aaPredicted RBP8.55□□□□□ -1.04
VPS53-217ENST00000575100 ZNF280DQ6N043 979 aa8.55□□□□□ -1.04
VPS53-217ENST00000575100 PGBD3Q8N328 593 aa8.55□□□□□ -1.04
VPS53-217ENST00000575100 SH3TC2Q8TF17 1288 aa8.55□□□□□ -1.04
VPS53-217ENST00000575100 FHDC1Q9C0D6 1143 aaPredicted RBP8.55□□□□□ -1.04
VPS53-217ENST00000575100 SALL2Q9Y467 1007 aaPredicted RBP8.55□□□□□ -1.04
VPS53-217ENST00000575100 KAT6BQ8WYB5 2073 aa8.55□□□□□ -1.04
VPS53-217ENST00000575100 SFI1A8K8P3 1242 aa8.55□□□□□ -1.04
VPS53-217ENST00000575100 CAND2O75155 1236 aa8.55□□□□□ -1.04
VPS53-217ENST00000575100 IL2RBP14784 551 aa8.55□□□□□ -1.04
VPS53-217ENST00000575100 HDAC1Q13547 482 aaPredicted RBP8.55□□□□□ -1.04
VPS53-217ENST00000575100 HS2ST1Q7LGA3 356 aa8.55□□□□□ -1.04
VPS53-217ENST00000575100 ZNF784Q8NCA9 323 aaPredicted RBP8.55□□□□□ -1.04
VPS53-217ENST00000575100 TPCN2Q8NHX9 752 aa8.55□□□□□ -1.04
VPS53-217ENST00000575100 IP6K1Q92551 441 aa8.55□□□□□ -1.04
VPS53-217ENST00000575100 GPRASP2Q96D09 838 aa8.55□□□□□ -1.04
VPS53-217ENST00000575100 LTV1Q96GA3 475 aaPredicted RBP8.55□□□□□ -1.04
VPS53-217ENST00000575100 CHST12Q9NRB3 414 aa8.55□□□□□ -1.04
VPS53-217ENST00000575100 RGPD2P0DJD1 1756 aa8.54□□□□□ -1.04
VPS53-217ENST00000575100 LGR5O75473 907 aa8.54□□□□□ -1.04
VPS53-217ENST00000575100 SLC34A2O95436 690 aa8.54□□□□□ -1.04
VPS53-217ENST00000575100 MPSTP25325 297 aa8.54□□□□□ -1.04
VPS53-217ENST00000575100 NFE2Q16621 373 aaPredicted RBP8.54□□□□□ -1.04
VPS53-217ENST00000575100 WDR75Q8IWA0 830 aaKnown RBP8.54□□□□□ -1.04
VPS53-217ENST00000575100 APPBP2Q92624 585 aa8.54□□□□□ -1.04
VPS53-217ENST00000575100 DEPDC7Q96QD5 511 aa8.54□□□□□ -1.04
VPS53-217ENST00000575100 PLEKHF1Q96S99 279 aa8.54□□□□□ -1.04
VPS53-217ENST00000575100 NAP1L4Q99733 375 aaKnown RBP8.54□□□□□ -1.04
VPS53-217ENST00000575100 ARNT2Q9HBZ2 717 aa8.54□□□□□ -1.04
VPS53-217ENST00000575100 CASS4Q9NQ75 786 aa8.54□□□□□ -1.04
VPS53-217ENST00000575100 CNTN3Q9P232 1028 aa8.54□□□□□ -1.04
VPS53-217ENST00000575100 RTL1A6NKG5 1358 aa8.54□□□□□ -1.04
VPS53-217ENST00000575100 KIF24Q5T7B8 1368 aa8.54□□□□□ -1.04
VPS53-217ENST00000575100 FAM221BA6H8Z2 402 aa8.53□□□□□ -1.04
VPS53-217ENST00000575100 APAF1O14727 1248 aa8.53□□□□□ -1.04
VPS53-217ENST00000575100 ZBTB24O43167 697 aaPredicted RBP8.53□□□□□ -1.04
VPS53-217ENST00000575100 CLCN6P51797 869 aa8.53□□□□□ -1.04
VPS53-217ENST00000575100 CHMP4BP1P59074 171 aa8.53□□□□□ -1.04
VPS53-217ENST00000575100 SYCP2LQ5T4T6 812 aa8.53□□□□□ -1.04
VPS53-217ENST00000575100 CCDC102BQ68D86 513 aa8.53□□□□□ -1.04
VPS53-217ENST00000575100 RASGRP4Q8TDF6 673 aa8.53□□□□□ -1.04
VPS53-217ENST00000575100 FKBPLQ9UIM3 349 aa8.53□□□□□ -1.04
VPS53-217ENST00000575100 SCINQ9Y6U3 715 aa8.53□□□□□ -1.04
VPS53-217ENST00000575100 HCLS1P14317 486 aaPredicted RBP8.53□□□□□ -1.04
VPS53-217ENST00000575100 NAA30Q147X3 362 aaPredicted RBP8.53□□□□□ -1.04
VPS53-217ENST00000575100 ZNF827Q17R98 1081 aa8.53□□□□□ -1.04
VPS53-217ENST00000575100 ALG1LQ6GMV1 187 aa8.53□□□□□ -1.04
VPS53-217ENST00000575100 LRP10Q7Z4F1 713 aa8.53□□□□□ -1.04
VPS53-217ENST00000575100 USHBP1Q8N6Y0 703 aa8.53□□□□□ -1.04
VPS53-217ENST00000575100 ANKRD24Q8TF21 1146 aa8.53□□□□□ -1.04
VPS53-217ENST00000575100 ACSBG1Q96GR2 724 aa8.53□□□□□ -1.04
VPS53-217ENST00000575100 MS4A3Q96HJ5 214 aa8.53□□□□□ -1.04
VPS53-217ENST00000575100 PHACTR3Q96KR7 559 aa8.53□□□□□ -1.04
VPS53-217ENST00000575100 ARPC5LQ9BPX5 153 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms