RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 COG6Q9Y2V7 657 aa16.54■□□□□ 0.24
CLK3-216ENST00000564468 SURF6O75683 361 aaKnown RBP16.53■□□□□ 0.24
CLK3-216ENST00000564468 NF2P35240 595 aa16.53■□□□□ 0.24
CLK3-216ENST00000564468 TIMM10P62072 90 aa16.53■□□□□ 0.24
CLK3-216ENST00000564468 SAPCD2Q86UD0 394 aa16.53■□□□□ 0.24
CLK3-216ENST00000564468 CDCA5Q96FF9 252 aa16.53■□□□□ 0.24
CLK3-216ENST00000564468 YTHDC1Q96MU7 727 aaKnown RBP16.53■□□□□ 0.24
CLK3-216ENST00000564468 NEUROD6Q96NK8 337 aa16.53■□□□□ 0.24
CLK3-216ENST00000564468 MRIQ9BWK5 157 aa16.53■□□□□ 0.24
CLK3-216ENST00000564468 GBA2Q9HCG7 927 aaPredicted RBP16.53■□□□□ 0.24
CLK3-216ENST00000564468 SPDYE2BA6NHP3 402 aa16.52■□□□□ 0.24
CLK3-216ENST00000564468 SPDYE6P0CI01 402 aa16.52■□□□□ 0.24
CLK3-216ENST00000564468 FKBP1BP68106 108 aa16.52■□□□□ 0.24
CLK3-216ENST00000564468 GORABQ5T7V8 394 aa16.52■□□□□ 0.24
CLK3-216ENST00000564468 CCDC102BQ68D86 513 aa16.52■□□□□ 0.24
CLK3-216ENST00000564468 CEP85Q6P2H3 762 aa16.52■□□□□ 0.24
CLK3-216ENST00000564468 RPAP2Q8IXW5 612 aaPredicted RBP16.52■□□□□ 0.24
CLK3-216ENST00000564468 ZGPATQ8N5A5 531 aaKnown RBP16.52■□□□□ 0.24
CLK3-216ENST00000564468 XAGE2Q96GT9 111 aa16.52■□□□□ 0.24
CLK3-216ENST00000564468 GPR108Q9NPR9 543 aa16.52■□□□□ 0.24
CLK3-216ENST00000564468 NOP58Q9Y2X3 529 aaKnown RBP16.52■□□□□ 0.24
CLK3-216ENST00000564468 COL1A1P02452 1464 aaPredicted RBP16.52■□□□□ 0.23
CLK3-216ENST00000564468 HMMRO75330 724 aa16.51■□□□□ 0.23
CLK3-216ENST00000564468 PHKA1P46020 1223 aa16.51■□□□□ 0.23
CLK3-216ENST00000564468 CRKP46108 304 aa16.51■□□□□ 0.23
CLK3-216ENST00000564468 HSP90AB4PQ58FF6 505 aa16.51■□□□□ 0.23
CLK3-216ENST00000564468 TEKT1Q969V4 418 aa16.51■□□□□ 0.23
CLK3-216ENST00000564468 PRMT6Q96LA8 375 aaPredicted RBP16.51■□□□□ 0.23
CLK3-216ENST00000564468 PPP2R3BQ9Y5P8 575 aa16.51■□□□□ 0.23
CLK3-216ENST00000564468 MYH2Q9UKX2 1941 aa16.51■□□□□ 0.23
CLK3-216ENST00000564468 ADORA1P30542 326 aa16.5■□□□□ 0.23
CLK3-216ENST00000564468 HUNKP57058 714 aa16.5■□□□□ 0.23
CLK3-216ENST00000564468 TNFAIP1Q13829 316 aa16.5■□□□□ 0.23
CLK3-216ENST00000564468 ERC1Q8IUD2 1116 aa16.5■□□□□ 0.23
CLK3-216ENST00000564468 ZBTB40Q9NUA8 1239 aa16.5■□□□□ 0.23
CLK3-216ENST00000564468 PAPPA2Q9BXP8 1791 aa16.5■□□□□ 0.23
CLK3-216ENST00000564468 PDS5AQ29RF7 1337 aaKnown RBP16.49■□□□□ 0.23
CLK3-216ENST00000564468 SALL1Q9NSC2 1324 aa16.49■□□□□ 0.23
CLK3-216ENST00000564468 AOC2O75106 756 aa16.49■□□□□ 0.23
CLK3-216ENST00000564468 DLK2Q6UY11 383 aa16.49■□□□□ 0.23
CLK3-216ENST00000564468 LDHBP07195 334 aaKnown RBP16.48■□□□□ 0.23
CLK3-216ENST00000564468 UQCRFS1P1P0C7P4 283 aa16.48■□□□□ 0.23
CLK3-216ENST00000564468 SPTY2D1Q68D10 685 aaPredicted RBP16.48■□□□□ 0.23
CLK3-216ENST00000564468 HHIPL2Q6UWX4 724 aa16.48■□□□□ 0.23
CLK3-216ENST00000564468 ZDHHC15Q96MV8 337 aa16.48■□□□□ 0.23
CLK3-216ENST00000564468 MCOLN1Q9GZU1 580 aa16.48■□□□□ 0.23
CLK3-216ENST00000564468 DEFB129Q9H1M3 183 aa16.48■□□□□ 0.23
CLK3-216ENST00000564468 VEZTQ9HBM0 779 aa16.48■□□□□ 0.23
CLK3-216ENST00000564468 TSKSQ9UJT2 592 aa16.48■□□□□ 0.23
CLK3-216ENST00000564468 AK9Q5TCS8 1911 aa16.48■□□□□ 0.23
CLK3-216ENST00000564468 CLRN2A0PK11 232 aa16.47■□□□□ 0.23
CLK3-216ENST00000564468 TNNI2P48788 182 aa16.47■□□□□ 0.23
CLK3-216ENST00000564468 SPDYE2Q495Y8 402 aa16.47■□□□□ 0.23
CLK3-216ENST00000564468 TNNI3KQ59H18 835 aa16.47■□□□□ 0.23
CLK3-216ENST00000564468 CCDC158Q5M9N0 1113 aa16.47■□□□□ 0.23
CLK3-216ENST00000564468 RGMBQ6NW40 437 aa16.47■□□□□ 0.23
CLK3-216ENST00000564468 CCDC102AQ96A19 550 aa16.47■□□□□ 0.23
CLK3-216ENST00000564468 TMOD2Q9NZR1 351 aa16.47■□□□□ 0.23
CLK3-216ENST00000564468 ZNF70Q9UC06 446 aaPredicted RBP16.47■□□□□ 0.23
CLK3-216ENST00000564468 SCAF8Q9UPN6 1271 aaKnown RBP16.47■□□□□ 0.23
CLK3-216ENST00000564468 PCDHAC2Q9Y5I4 1007 aa16.47■□□□□ 0.23
CLK3-216ENST00000564468 FPGT-TNNI3KV9GXZ4 949 aa16.47■□□□□ 0.23
CLK3-216ENST00000564468 NOGQ13253 232 aa16.46■□□□□ 0.23
CLK3-216ENST00000564468 RASGRF1Q13972 1273 aa16.46■□□□□ 0.23
CLK3-216ENST00000564468 TTLL12Q14166 644 aaPredicted RBP16.46■□□□□ 0.23
CLK3-216ENST00000564468 GRIK5Q16478 980 aa16.46■□□□□ 0.23
CLK3-216ENST00000564468 SUPT20HL1Q3ZLR7 823 aa16.46■□□□□ 0.23
CLK3-216ENST00000564468 SLF2Q8IX21 1173 aa16.46■□□□□ 0.23
CLK3-216ENST00000564468 TDRD3Q9H7E2 651 aaKnown RBP16.46■□□□□ 0.23
CLK3-216ENST00000564468 ARID4AP29374 1257 aaPredicted RBP16.45■□□□□ 0.22
CLK3-216ENST00000564468 DGKZQ13574 1117 aa16.45■□□□□ 0.22
CLK3-216ENST00000564468 C20orf194Q5TEA3 1177 aa16.45■□□□□ 0.22
CLK3-216ENST00000564468 PRAMEF18Q5VWM3 479 aa16.45■□□□□ 0.22
CLK3-216ENST00000564468 ARMC9Q7Z3E5 817 aa16.45■□□□□ 0.22
CLK3-216ENST00000564468 ABCF2Q9UG63 623 aa16.45■□□□□ 0.22
CLK3-216ENST00000564468 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.45■□□□□ 0.22
CLK3-216ENST00000564468 AKAP11Q9UKA4 1901 aa16.45■□□□□ 0.22
CLK3-216ENST00000564468 THSD7BQ9C0I4 1608 aa16.45■□□□□ 0.22
CLK3-216ENST00000564468 PPP1R12BO60237 982 aaPredicted RBP16.44■□□□□ 0.22
CLK3-216ENST00000564468 PRDX5P30044 214 aa16.44■□□□□ 0.22
CLK3-216ENST00000564468 ZNF157P51786 506 aaPredicted RBP16.44■□□□□ 0.22
CLK3-216ENST00000564468 TTC39AQ5SRH9 613 aa16.44■□□□□ 0.22
CLK3-216ENST00000564468 SPATA5Q8NB90 893 aa16.44■□□□□ 0.22
CLK3-216ENST00000564468 EXOC6BQ9Y2D4 811 aa16.44■□□□□ 0.22
CLK3-216ENST00000564468 RAB11FIP3O75154 756 aa16.43■□□□□ 0.22
CLK3-216ENST00000564468 RASA3Q14644 834 aa16.43■□□□□ 0.22
CLK3-216ENST00000564468 FKBP1CQ5VVH2 108 aa16.43■□□□□ 0.22
CLK3-216ENST00000564468 ERICH6Q7L0X2 663 aa16.43■□□□□ 0.22
CLK3-216ENST00000564468 DZIP1Q86YF9 867 aaKnown RBP16.43■□□□□ 0.22
CLK3-216ENST00000564468 HMG20BQ9P0W2 317 aa16.43■□□□□ 0.22
CLK3-216ENST00000564468 UNCXA6NJT0 531 aa16.42■□□□□ 0.22
CLK3-216ENST00000564468 RRP1P56182 461 aaKnown RBP16.42■□□□□ 0.22
CLK3-216ENST00000564468 APOBEC3HQ6NTF7 200 aaKnown RBP16.42■□□□□ 0.22
CLK3-216ENST00000564468 KIF1BPQ96EK5 621 aa16.42■□□□□ 0.22
CLK3-216ENST00000564468 ZNF512BQ96KM6 892 aaPredicted RBP16.42■□□□□ 0.22
CLK3-216ENST00000564468 DBNDD2Q9BQY9 259 aa16.42■□□□□ 0.22
CLK3-216ENST00000564468 TCP10L2B9ZVM9 353 aa16.41■□□□□ 0.22
CLK3-216ENST00000564468 IGSF3O75054 1194 aa16.41■□□□□ 0.22
CLK3-216ENST00000564468 LDHCP07864 332 aa16.41■□□□□ 0.22
CLK3-216ENST00000564468 GSTO1P78417 241 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms