RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 RASSF4Q9H2L5 321 aa14.85□□□□□ -0.03
CSPG4P11-201ENST00000560634 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.85□□□□□ -0.03
CSPG4P11-201ENST00000560634 PSMC4P43686 418 aa14.85□□□□□ -0.03
CSPG4P11-201ENST00000560634 TNNI2P48788 182 aa14.85□□□□□ -0.03
CSPG4P11-201ENST00000560634 INF2Q27J81 1249 aa14.85□□□□□ -0.03
CSPG4P11-201ENST00000560634 SEL1L2Q5TEA6 688 aa14.85□□□□□ -0.03
CSPG4P11-201ENST00000560634 CEP85Q6P2H3 762 aa14.85□□□□□ -0.03
CSPG4P11-201ENST00000560634 OGFOD1Q8N543 542 aa14.85□□□□□ -0.03
CSPG4P11-201ENST00000560634 CHMLP26374 656 aa14.85□□□□□ -0.03
CSPG4P11-201ENST00000560634 GJC1P36383 396 aa14.85□□□□□ -0.03
CSPG4P11-201ENST00000560634 APOBRQ0VD83 1088 aa14.85□□□□□ -0.03
CSPG4P11-201ENST00000560634 ZNF804AQ7Z570 1209 aa14.85□□□□□ -0.03
CSPG4P11-201ENST00000560634 ACTN4O43707 911 aaKnown RBP14.85□□□□□ -0.03
CSPG4P11-201ENST00000560634 PUS7Q96PZ0 661 aaKnown RBP14.85□□□□□ -0.03
CSPG4P11-201ENST00000560634 SETDB2Q96T68 719 aa14.85□□□□□ -0.03
CSPG4P11-201ENST00000560634 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.85□□□□□ -0.03
CSPG4P11-201ENST00000560634 ZNF219Q9P2Y4 722 aaPredicted RBP14.85□□□□□ -0.03
CSPG4P11-201ENST00000560634 MYCNP04198 464 aaPredicted RBP14.84□□□□□ -0.03
CSPG4P11-201ENST00000560634 ARID4AP29374 1257 aaPredicted RBP14.84□□□□□ -0.03
CSPG4P11-201ENST00000560634 INTS8Q75QN2 995 aaKnown RBP14.84□□□□□ -0.03
CSPG4P11-201ENST00000560634 ZCRB1Q8TBF4 217 aaKnown RBP14.84□□□□□ -0.03
CSPG4P11-201ENST00000560634 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.84□□□□□ -0.03
CSPG4P11-201ENST00000560634 MKRN1Q9UHC7 482 aaKnown RBP14.84□□□□□ -0.03
CSPG4P11-201ENST00000560634 POLR3AO14802 1390 aaPredicted RBP14.84□□□□□ -0.03
CSPG4P11-201ENST00000560634 GBP6Q6ZN66 633 aa14.84□□□□□ -0.03
CSPG4P11-201ENST00000560634 APBB1IPQ7Z5R6 666 aaPredicted RBP14.84□□□□□ -0.03
CSPG4P11-201ENST00000560634 ZNF354CQ86Y25 554 aa14.84□□□□□ -0.03
CSPG4P11-201ENST00000560634 TMEM110-MUSTN1A8MSY1 372 aa14.84□□□□□ -0.03
CSPG4P11-201ENST00000560634 SLC4A8Q2Y0W8 1093 aa14.84□□□□□ -0.03
CSPG4P11-201ENST00000560634 C16orf71Q8IYS4 520 aaPredicted RBP14.84□□□□□ -0.03
CSPG4P11-201ENST00000560634 A0A1B0GUA9 196 aa14.84□□□□□ -0.03
CSPG4P11-201ENST00000560634 IRX3P78415 501 aaPredicted RBP14.84□□□□□ -0.03
CSPG4P11-201ENST00000560634 SMAP1Q8IYB5 467 aaPredicted RBP14.84□□□□□ -0.03
CSPG4P11-201ENST00000560634 TBC1D8BQ0IIM8 1120 aa14.83□□□□□ -0.03
CSPG4P11-201ENST00000560634 CFAP157Q5JU67 520 aa14.83□□□□□ -0.03
CSPG4P11-201ENST00000560634 SV2BQ7L1I2 683 aa14.83□□□□□ -0.03
CSPG4P11-201ENST00000560634 CCDC25Q86WR0 208 aa14.83□□□□□ -0.03
CSPG4P11-201ENST00000560634 PLEKHM2Q8IWE5 1019 aa14.83□□□□□ -0.03
CSPG4P11-201ENST00000560634 ZNF622Q969S3 477 aaKnown RBP eCLIP14.83□□□□□ -0.03
CSPG4P11-201ENST00000560634 NAPGQ99747 312 aaPredicted RBP14.83□□□□□ -0.03
CSPG4P11-201ENST00000560634 USP26Q9BXU7 913 aa14.83□□□□□ -0.03
CSPG4P11-201ENST00000560634 ZBTB40Q9NUA8 1239 aa14.83□□□□□ -0.03
CSPG4P11-201ENST00000560634 ADGRL1O94910 1474 aa14.83□□□□□ -0.04
CSPG4P11-201ENST00000560634 SEC62Q99442 399 aaKnown RBP14.83□□□□□ -0.04
CSPG4P11-201ENST00000560634 PTPN23Q9H3S7 1636 aa14.83□□□□□ -0.04
CSPG4P11-201ENST00000560634 SEPT6Q14141 434 aa14.83□□□□□ -0.04
CSPG4P11-201ENST00000560634 STMN2Q93045 179 aa14.83□□□□□ -0.04
CSPG4P11-201ENST00000560634 LLPHQ9BRT6 129 aaKnown RBP14.83□□□□□ -0.04
CSPG4P11-201ENST00000560634 HELLSQ9NRZ9 838 aa14.83□□□□□ -0.04
CSPG4P11-201ENST00000560634 SWAP70Q9UH65 585 aa14.83□□□□□ -0.04
CSPG4P11-201ENST00000560634 MCM7P33993 719 aa14.83□□□□□ -0.04
CSPG4P11-201ENST00000560634 MRPS9P82933 396 aaKnown RBP14.83□□□□□ -0.04
CSPG4P11-201ENST00000560634 GRIN2AQ12879 1464 aa14.83□□□□□ -0.04
CSPG4P11-201ENST00000560634 VAMP4O75379 141 aa14.82□□□□□ -0.04
CSPG4P11-201ENST00000560634 DNAJC21Q5F1R6 531 aaKnown RBP14.82□□□□□ -0.04
CSPG4P11-201ENST00000560634 MCM9Q9NXL9 1143 aa14.82□□□□□ -0.04
CSPG4P11-201ENST00000560634 AFAP1L1Q8TED9 768 aa14.82□□□□□ -0.04
CSPG4P11-201ENST00000560634 SBNO2Q9Y2G9 1366 aa14.82□□□□□ -0.04
CSPG4P11-201ENST00000560634 TPD52P55327 224 aaPredicted RBP14.82□□□□□ -0.04
CSPG4P11-201ENST00000560634 CLUL1Q15846 466 aa14.82□□□□□ -0.04
CSPG4P11-201ENST00000560634 IGSF22Q8N9C0 903 aa14.82□□□□□ -0.04
CSPG4P11-201ENST00000560634 SMC1BQ8NDV3 1235 aa14.82□□□□□ -0.04
CSPG4P11-201ENST00000560634 LEO1Q8WVC0 666 aaPredicted RBP14.82□□□□□ -0.04
CSPG4P11-201ENST00000560634 UBLCP1Q8WVY7 318 aaPredicted RBP14.82□□□□□ -0.04
CSPG4P11-201ENST00000560634 NYXQ9GZU5 481 aa14.82□□□□□ -0.04
CSPG4P11-201ENST00000560634 ASXL1Q8IXJ9 1541 aa14.82□□□□□ -0.04
CSPG4P11-201ENST00000560634 A0A1B0GUL7 405 aa14.82□□□□□ -0.04
CSPG4P11-201ENST00000560634 SMIM23A6NLE4 172 aa14.82□□□□□ -0.04
CSPG4P11-201ENST00000560634 TRAF5O00463 557 aa14.82□□□□□ -0.04
CSPG4P11-201ENST00000560634 GMNNO75496 209 aa14.82□□□□□ -0.04
CSPG4P11-201ENST00000560634 SNX16P57768 344 aa14.82□□□□□ -0.04
CSPG4P11-201ENST00000560634 FBXO31Q5XUX0 539 aaPredicted RBP14.82□□□□□ -0.04
CSPG4P11-201ENST00000560634 KIFAP3Q92845 792 aa14.82□□□□□ -0.04
CSPG4P11-201ENST00000560634 IQSEC3Q9UPP2 1182 aaPredicted RBP14.82□□□□□ -0.04
CSPG4P11-201ENST00000560634 URB2Q14146 1524 aaKnown RBP14.81□□□□□ -0.04
CSPG4P11-201ENST00000560634 TMEM87BQ96K49 555 aa14.81□□□□□ -0.04
CSPG4P11-201ENST00000560634 NUP58Q9BVL2 599 aa14.81□□□□□ -0.04
CSPG4P11-201ENST00000560634 FRMD4BQ9Y2L6 1034 aa14.81□□□□□ -0.04
CSPG4P11-201ENST00000560634 CUL7Q14999 1698 aa14.81□□□□□ -0.04
CSPG4P11-201ENST00000560634 CIB2O75838 187 aa14.81□□□□□ -0.04
CSPG4P11-201ENST00000560634 ERCC5P28715 1186 aaPredicted RBP14.81□□□□□ -0.04
CSPG4P11-201ENST00000560634 RUFY4Q6ZNE9 571 aa14.81□□□□□ -0.04
CSPG4P11-201ENST00000560634 NOC4LQ9BVI4 516 aaKnown RBP14.81□□□□□ -0.04
CSPG4P11-201ENST00000560634 PA2G4Q9UQ80 394 aaKnown RBP14.81□□□□□ -0.04
CSPG4P11-201ENST00000560634 NDUFAB1O14561 156 aa14.81□□□□□ -0.04
CSPG4P11-201ENST00000560634 C8orf74Q6P047 294 aa14.81□□□□□ -0.04
CSPG4P11-201ENST00000560634 CYP26C1Q6V0L0 522 aa14.81□□□□□ -0.04
CSPG4P11-201ENST00000560634 POTEDQ86YR6 584 aa14.81□□□□□ -0.04
CSPG4P11-201ENST00000560634 C10orf67Q8IYJ2 551 aa14.81□□□□□ -0.04
CSPG4P11-201ENST00000560634 MLKLQ8NB16 471 aa14.81□□□□□ -0.04
CSPG4P11-201ENST00000560634 IMPACTQ9P2X3 320 aa14.81□□□□□ -0.04
CSPG4P11-201ENST00000560634 EPB41P11171 864 aaKnown RBP14.81□□□□□ -0.04
CSPG4P11-201ENST00000560634 CACNA2D3Q8IZS8 1091 aa14.81□□□□□ -0.04
CSPG4P11-201ENST00000560634 VIMP08670 466 aaKnown RBP14.8□□□□□ -0.04
CSPG4P11-201ENST00000560634 RAPGEF1Q13905 1077 aa14.8□□□□□ -0.04
CSPG4P11-201ENST00000560634 CNNM4Q6P4Q7 775 aa14.8□□□□□ -0.04
CSPG4P11-201ENST00000560634 TTC6Q86TZ1 520 aa14.8□□□□□ -0.04
CSPG4P11-201ENST00000560634 A0A1B0GVL5 298 aa14.8□□□□□ -0.04
CSPG4P11-201ENST00000560634 ANKRD2Q9GZV1 360 aa14.8□□□□□ -0.04
CSPG4P11-201ENST00000560634 GLT8D2Q9H1C3 349 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms