RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 FRMD6Q96NE9 622 aa6.69□□□□□ -1.34
VPS13C-207ENST00000558919 SETDB2Q96T68 719 aa6.69□□□□□ -1.34
VPS13C-207ENST00000558919 RUSC1Q9BVN2 902 aa6.69□□□□□ -1.34
VPS13C-207ENST00000558919 NRSN2Q9GZP1 204 aa6.69□□□□□ -1.34
VPS13C-207ENST00000558919 SPG7Q9UQ90 795 aa6.69□□□□□ -1.34
VPS13C-207ENST00000558919 LOC100289279A0A1B0GTE1 492 aa6.68□□□□□ -1.34
VPS13C-207ENST00000558919 ZBTB7CA1YPR0 619 aa6.68□□□□□ -1.34
VPS13C-207ENST00000558919 K7ELQ4 463 aaPredicted RBP6.68□□□□□ -1.34
VPS13C-207ENST00000558919 ADAM23O75077 832 aa6.68□□□□□ -1.34
VPS13C-207ENST00000558919 CYP11A1P05108 521 aa6.68□□□□□ -1.34
VPS13C-207ENST00000558919 EAPPQ56P03 285 aaPredicted RBP6.68□□□□□ -1.34
VPS13C-207ENST00000558919 NPAS4Q8IUM7 802 aa6.68□□□□□ -1.34
VPS13C-207ENST00000558919 PRPF40AO75400 957 aaKnown RBP6.67□□□□□ -1.34
VPS13C-207ENST00000558919 GSTT1P30711 240 aa6.67□□□□□ -1.34
VPS13C-207ENST00000558919 FAAP100Q0VG06 881 aa6.67□□□□□ -1.34
VPS13C-207ENST00000558919 UVSSAQ2YD98 709 aa6.67□□□□□ -1.34
VPS13C-207ENST00000558919 EXOSC6Q5RKV6 272 aaKnown RBP6.67□□□□□ -1.34
VPS13C-207ENST00000558919 ANKRD34AQ69YU3 496 aa6.67□□□□□ -1.34
VPS13C-207ENST00000558919 UBL7Q96S82 380 aaPredicted RBP6.67□□□□□ -1.34
VPS13C-207ENST00000558919 USP26Q9BXU7 913 aa6.67□□□□□ -1.34
VPS13C-207ENST00000558919 TMPRSS13Q9BYE2 586 aa6.67□□□□□ -1.34
VPS13C-207ENST00000558919 OSBPL7Q9BZF2 842 aa6.67□□□□□ -1.34
VPS13C-207ENST00000558919 DYRK3O43781 588 aa6.66□□□□□ -1.34
VPS13C-207ENST00000558919 AP3B2Q13367 1082 aa6.66□□□□□ -1.34
VPS13C-207ENST00000558919 POU4F3Q15319 338 aa6.66□□□□□ -1.34
VPS13C-207ENST00000558919 HP1BP3Q5SSJ5 553 aaPredicted RBP6.66□□□□□ -1.34
VPS13C-207ENST00000558919 C3orf58Q8NDZ4 430 aa6.66□□□□□ -1.34
VPS13C-207ENST00000558919 FAM46AQ96IP4 442 aaKnown RBP6.66□□□□□ -1.34
VPS13C-207ENST00000558919 TRIM56Q9BRZ2 755 aaKnown RBP6.66□□□□□ -1.34
VPS13C-207ENST00000558919 SEMA6BQ9H3T3 888 aa6.66□□□□□ -1.34
VPS13C-207ENST00000558919 C12orf49Q9H741 205 aa6.66□□□□□ -1.34
VPS13C-207ENST00000558919 SUGCTQ9HAC7 445 aa6.66□□□□□ -1.34
VPS13C-207ENST00000558919 MAOBP27338 520 aa6.65□□□□□ -1.34
VPS13C-207ENST00000558919 GNA15P30679 374 aa6.65□□□□□ -1.34
VPS13C-207ENST00000558919 PPP2R3AQ06190 1150 aa6.65□□□□□ -1.34
VPS13C-207ENST00000558919 NUTM2GQ5VZR2 741 aa6.65□□□□□ -1.34
VPS13C-207ENST00000558919 FDX2Q6P4F2 183 aa6.65□□□□□ -1.34
VPS13C-207ENST00000558919 PRR23CQ6ZRP0 262 aa6.65□□□□□ -1.34
VPS13C-207ENST00000558919 SMG8Q8ND04 991 aaKnown RBP6.65□□□□□ -1.34
VPS13C-207ENST00000558919 ANKRD24Q8TF21 1146 aa6.65□□□□□ -1.34
VPS13C-207ENST00000558919 CORO1BQ9BR76 489 aa6.65□□□□□ -1.34
VPS13C-207ENST00000558919 CYP4F12Q9HCS2 524 aa6.65□□□□□ -1.34
VPS13C-207ENST00000558919 TMEM39AQ9NV64 488 aa6.65□□□□□ -1.34
VPS13C-207ENST00000558919 FAM8A1Q9UBU6 413 aa6.65□□□□□ -1.34
VPS13C-207ENST00000558919 PPM1HQ9ULR3 514 aa6.65□□□□□ -1.34
VPS13C-207ENST00000558919 AKAP2Q9Y2D5 859 aa6.65□□□□□ -1.34
VPS13C-207ENST00000558919 SART1O43290 800 aaKnown RBP6.64□□□□□ -1.35
VPS13C-207ENST00000558919 DLGAP3O95886 979 aa6.64□□□□□ -1.35
VPS13C-207ENST00000558919 ARMC10Q8N2F6 343 aa6.64□□□□□ -1.35
VPS13C-207ENST00000558919 GPN3Q9UHW5 284 aaPredicted RBP6.64□□□□□ -1.35
VPS13C-207ENST00000558919 ZNF157P51786 506 aaPredicted RBP6.63□□□□□ -1.35
VPS13C-207ENST00000558919 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.63□□□□□ -1.35
VPS13C-207ENST00000558919 UTP4Q969X6 686 aaKnown RBP6.63□□□□□ -1.35
VPS13C-207ENST00000558919 DUSP9Q99956 384 aaKnown RBP6.63□□□□□ -1.35
VPS13C-207ENST00000558919 HIF3AQ9Y2N7 669 aa6.63□□□□□ -1.35
VPS13C-207ENST00000558919 AK5Q9Y6K8 562 aa6.63□□□□□ -1.35
VPS13C-207ENST00000558919 SYNGAP1Q96PV0 1343 aa6.62□□□□□ -1.35
VPS13C-207ENST00000558919 DHX15O43143 795 aaKnown RBP6.62□□□□□ -1.35
VPS13C-207ENST00000558919 TIAF1O95411 115 aa6.62□□□□□ -1.35
VPS13C-207ENST00000558919 CTSBP07858 339 aa6.62□□□□□ -1.35
VPS13C-207ENST00000558919 EIF4BP23588 611 aaKnown RBP6.62□□□□□ -1.35
VPS13C-207ENST00000558919 PREPP48147 710 aa6.62□□□□□ -1.35
VPS13C-207ENST00000558919 FBXO33Q7Z6M2 555 aa6.62□□□□□ -1.35
VPS13C-207ENST00000558919 C12orf50Q8NA57 414 aaPredicted RBP6.62□□□□□ -1.35
VPS13C-207ENST00000558919 MYRFLQ96LU7 910 aa6.62□□□□□ -1.35
VPS13C-207ENST00000558919 NECAB3Q96P71 396 aaPredicted RBP6.62□□□□□ -1.35
VPS13C-207ENST00000558919 CEP44Q9C0F1 390 aa6.62□□□□□ -1.35
VPS13C-207ENST00000558919 RAXQ9Y2V3 346 aa6.62□□□□□ -1.35
VPS13C-207ENST00000558919 ECEL1O95672 775 aa6.61□□□□□ -1.35
VPS13C-207ENST00000558919 USP17L7P0C7H9 530 aa6.61□□□□□ -1.35
VPS13C-207ENST00000558919 ITGB7P26010 798 aa6.61□□□□□ -1.35
VPS13C-207ENST00000558919 TMCO4Q5TGY1 634 aa6.61□□□□□ -1.35
VPS13C-207ENST00000558919 SLC51AQ86UW1 340 aa6.61□□□□□ -1.35
VPS13C-207ENST00000558919 KRT82Q9NSB4 513 aa6.61□□□□□ -1.35
VPS13C-207ENST00000558919 PARP2Q9UGN5 583 aa6.61□□□□□ -1.35
VPS13C-207ENST00000558919 GAS2O43903 313 aaKnown RBP6.6□□□□□ -1.35
VPS13C-207ENST00000558919 GSTP1P09211 210 aaKnown RBP6.6□□□□□ -1.35
VPS13C-207ENST00000558919 NME2P22392 152 aa6.6□□□□□ -1.35
VPS13C-207ENST00000558919 DAB2P98082 770 aa6.6□□□□□ -1.35
VPS13C-207ENST00000558919 HNRNPUQ00839 825 aaKnown RBP eCLIP6.6□□□□□ -1.35
VPS13C-207ENST00000558919 SOX4Q06945 474 aaPredicted RBP6.6□□□□□ -1.35
VPS13C-207ENST00000558919 PRSS36Q5K4E3 855 aa6.6□□□□□ -1.35
VPS13C-207ENST00000558919 FAM20CQ8IXL6 584 aa6.6□□□□□ -1.35
VPS13C-207ENST00000558919 EMILIN2Q9BXX0 1053 aa6.6□□□□□ -1.35
VPS13C-207ENST00000558919 RAD18Q9NS91 495 aa6.6□□□□□ -1.35
VPS13C-207ENST00000558919 BMP3P12645 472 aa6.59□□□□□ -1.35
VPS13C-207ENST00000558919 ARNTP27540 789 aa6.59□□□□□ -1.35
VPS13C-207ENST00000558919 XPCQ01831 940 aaPredicted RBP6.59□□□□□ -1.35
VPS13C-207ENST00000558919 PDE3AQ14432 1141 aa6.59□□□□□ -1.35
VPS13C-207ENST00000558919 TPTE2Q6XPS3 522 aa6.59□□□□□ -1.35
VPS13C-207ENST00000558919 PDZD3Q86UT5 571 aa6.59□□□□□ -1.35
VPS13C-207ENST00000558919 CLEC10AQ8IUN9 316 aa6.59□□□□□ -1.35
VPS13C-207ENST00000558919 SULF2Q8IWU5 870 aa6.59□□□□□ -1.35
VPS13C-207ENST00000558919 RNF19AQ9NV58 838 aa6.59□□□□□ -1.35
VPS13C-207ENST00000558919 STOML1Q9UBI4 398 aa6.59□□□□□ -1.35
VPS13C-207ENST00000558919 SAMM50Q9Y512 469 aa6.59□□□□□ -1.35
VPS13C-207ENST00000558919 ENC1O14682 589 aa6.58□□□□□ -1.36
VPS13C-207ENST00000558919 GSC2O15499 205 aa6.58□□□□□ -1.36
VPS13C-207ENST00000558919 AOC2O75106 756 aa6.58□□□□□ -1.36
VPS13C-207ENST00000558919 ADH5P11766 374 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms