RNA–Protein interactions for RNA: ENST00000558880.1

TRAF3-206, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 374 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-206ENST00000558880 FAM177BA6PVY3 158 aa9.13□□□□□ -0.95
TRAF3-206ENST00000558880 CSF1RP07333 972 aa9.13□□□□□ -0.95
TRAF3-206ENST00000558880 RABL6Q3YEC7 729 aaPredicted RBP9.13□□□□□ -0.95
TRAF3-206ENST00000558880 RTL5Q5HYW3 569 aaPredicted RBP9.13□□□□□ -0.95
TRAF3-206ENST00000558880 SPRYD7Q5W111 196 aa9.13□□□□□ -0.95
TRAF3-206ENST00000558880 SETDB2Q96T68 719 aa9.13□□□□□ -0.95
TRAF3-206ENST00000558880 UTP14AQ9BVJ6 771 aaKnown RBP9.13□□□□□ -0.95
TRAF3-206ENST00000558880 C1orf115Q9H7X2 142 aa9.13□□□□□ -0.95
TRAF3-206ENST00000558880 ZNF652Q9Y2D9 606 aa9.13□□□□□ -0.95
TRAF3-206ENST00000558880 N4BP2Q86UW6 1770 aaPredicted RBP9.12□□□□□ -0.95
TRAF3-206ENST00000558880 SPDYE5A6NIY4 337 aa9.12□□□□□ -0.95
TRAF3-206ENST00000558880 HCLS1P14317 486 aaPredicted RBP9.12□□□□□ -0.95
TRAF3-206ENST00000558880 RFX5P48382 616 aaPredicted RBP9.12□□□□□ -0.95
TRAF3-206ENST00000558880 SKIV2LQ15477 1246 aaKnown RBP9.12□□□□□ -0.95
TRAF3-206ENST00000558880 SH3D19Q5HYK7 790 aa9.12□□□□□ -0.95
TRAF3-206ENST00000558880 C9orf131Q5VYM1 1079 aa9.12□□□□□ -0.95
TRAF3-206ENST00000558880 UBE3BQ7Z3V4 1068 aa9.12□□□□□ -0.95
TRAF3-206ENST00000558880 ITPRIPQ8IWB1 547 aa9.12□□□□□ -0.95
TRAF3-206ENST00000558880 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.12□□□□□ -0.95
TRAF3-206ENST00000558880 IRX2Q9BZI1 471 aaPredicted RBP9.12□□□□□ -0.95
TRAF3-206ENST00000558880 RRAGCQ9HB90 399 aa9.12□□□□□ -0.95
TRAF3-206ENST00000558880 TRMT112Q9UI30 125 aaKnown RBP9.12□□□□□ -0.95
TRAF3-206ENST00000558880 RIC1Q4ADV7 1423 aa9.12□□□□□ -0.95
TRAF3-206ENST00000558880 C10orf71Q711Q0 1435 aa9.12□□□□□ -0.95
TRAF3-206ENST00000558880 A0A0G2JLW4 131 aa9.11□□□□□ -0.95
TRAF3-206ENST00000558880 PNMA6EA0A0J9YXQ4 647 aa9.11□□□□□ -0.95
TRAF3-206ENST00000558880 IRS4O14654 1257 aaPredicted RBP9.11□□□□□ -0.95
TRAF3-206ENST00000558880 LILRB3O75022 631 aa9.11□□□□□ -0.95
TRAF3-206ENST00000558880 KCNA3P22001 575 aa9.11□□□□□ -0.95
TRAF3-206ENST00000558880 NEXNQ0ZGT2 675 aa9.11□□□□□ -0.95
TRAF3-206ENST00000558880 MTX1Q13505 466 aa9.11□□□□□ -0.95
TRAF3-206ENST00000558880 SF3B3Q15393 1217 aaKnown RBP9.11□□□□□ -0.95
TRAF3-206ENST00000558880 CRY2Q49AN0 593 aa9.11□□□□□ -0.95
TRAF3-206ENST00000558880 PRPF38BQ5VTL8 546 aaKnown RBP9.11□□□□□ -0.95
TRAF3-206ENST00000558880 FTSJ3Q8IY81 847 aaKnown RBP9.11□□□□□ -0.95
TRAF3-206ENST00000558880 TTLL11Q8NHH1 800 aa9.11□□□□□ -0.95
TRAF3-206ENST00000558880 NUDT12Q9BQG2 462 aa9.11□□□□□ -0.95
TRAF3-206ENST00000558880 BICC1Q9H694 974 aaKnown RBP9.11□□□□□ -0.95
TRAF3-206ENST00000558880 DDX19BQ9UMR2 479 aa9.11□□□□□ -0.95
TRAF3-206ENST00000558880 LRRFIP2Q9Y608 721 aaKnown RBP9.11□□□□□ -0.95
TRAF3-206ENST00000558880 ANKRD36CQ5JPF3 1778 aa9.11□□□□□ -0.95
TRAF3-206ENST00000558880 TNRC6CQ9HCJ0 1690 aaKnown RBP9.1□□□□□ -0.95
TRAF3-206ENST00000558880 KDM2BQ8NHM5 1336 aa9.1□□□□□ -0.95
TRAF3-206ENST00000558880 SH3TC1Q8TE82 1336 aa9.1□□□□□ -0.95
TRAF3-206ENST00000558880 ZBTB24O43167 697 aaPredicted RBP9.1□□□□□ -0.95
TRAF3-206ENST00000558880 ZNF697Q5TEC3 545 aa9.1□□□□□ -0.95
TRAF3-206ENST00000558880 CEP85Q6P2H3 762 aa9.1□□□□□ -0.95
TRAF3-206ENST00000558880 NPM2Q86SE8 214 aaKnown RBP9.1□□□□□ -0.95
TRAF3-206ENST00000558880 NBPF5PQ86XG9 351 aaPredicted RBP9.1□□□□□ -0.95
TRAF3-206ENST00000558880 SMC1BQ8NDV3 1235 aa9.1□□□□□ -0.95
TRAF3-206ENST00000558880 CTSWP56202 376 aa9.09□□□□□ -0.95
TRAF3-206ENST00000558880 TPTE2Q6XPS3 522 aa9.09□□□□□ -0.95
TRAF3-206ENST00000558880 PPP1R42Q7Z4L9 355 aa9.09□□□□□ -0.95
TRAF3-206ENST00000558880 CNBD1Q8NA66 436 aa9.09□□□□□ -0.95
TRAF3-206ENST00000558880 GREM2Q9H772 168 aa9.09□□□□□ -0.95
TRAF3-206ENST00000558880 SEC31BQ9NQW1 1179 aa9.09□□□□□ -0.95
TRAF3-206ENST00000558880 C9orf78Q9NZ63 289 aaPredicted RBP9.09□□□□□ -0.95
TRAF3-206ENST00000558880 RNF181Q9P0P0 153 aa9.09□□□□□ -0.95
TRAF3-206ENST00000558880 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.09□□□□□ -0.95
TRAF3-206ENST00000558880 PDE8AO60658 829 aa9.08□□□□□ -0.96
TRAF3-206ENST00000558880 IGHDP01880 384 aa9.08□□□□□ -0.96
TRAF3-206ENST00000558880 GNAI2P04899 355 aa9.08□□□□□ -0.96
TRAF3-206ENST00000558880 UBTFL1P0CB47 393 aaPredicted RBP9.08□□□□□ -0.96
TRAF3-206ENST00000558880 SRGNP10124 158 aa9.08□□□□□ -0.96
TRAF3-206ENST00000558880 RPIAP49247 311 aa9.08□□□□□ -0.96
TRAF3-206ENST00000558880 ATP8B2P98198 1209 aa9.08□□□□□ -0.96
TRAF3-206ENST00000558880 TUSC1Q2TAM9 212 aa9.08□□□□□ -0.96
TRAF3-206ENST00000558880 PTCRAQ6ISU1 281 aaPredicted RBP9.08□□□□□ -0.96
TRAF3-206ENST00000558880 LMBR1LQ6UX01 489 aa9.08□□□□□ -0.96
TRAF3-206ENST00000558880 ZNF598Q86UK7 904 aaKnown RBP9.08□□□□□ -0.96
TRAF3-206ENST00000558880 SSH3Q8TE77 659 aa9.08□□□□□ -0.96
TRAF3-206ENST00000558880 BRIP1Q9BX63 1249 aa9.08□□□□□ -0.96
TRAF3-206ENST00000558880 NYXQ9GZU5 481 aa9.08□□□□□ -0.96
TRAF3-206ENST00000558880 PARP3Q9Y6F1 533 aa9.08□□□□□ -0.96
TRAF3-206ENST00000558880 DDX60Q8IY21 1712 aaKnown RBP9.08□□□□□ -0.96
TRAF3-206ENST00000558880 KIAA1551Q9HCM1 1747 aa9.08□□□□□ -0.96
TRAF3-206ENST00000558880 AFDNP55196 1824 aaKnown RBP9.08□□□□□ -0.96
TRAF3-206ENST00000558880 SNED1Q8TER0 1413 aa9.07□□□□□ -0.96
TRAF3-206ENST00000558880 ANKRD31Q8N7Z5 1873 aa9.07□□□□□ -0.96
TRAF3-206ENST00000558880 GFRA3O60609 400 aa9.07□□□□□ -0.96
TRAF3-206ENST00000558880 GNAI3P08754 354 aa9.07□□□□□ -0.96
TRAF3-206ENST00000558880 CCNYL3P0C7X3 344 aa9.07□□□□□ -0.96
TRAF3-206ENST00000558880 DPEP1P16444 411 aa9.07□□□□□ -0.96
TRAF3-206ENST00000558880 CHRNA5P30532 468 aa9.07□□□□□ -0.96
TRAF3-206ENST00000558880 HOXA10P31260 410 aaPredicted RBP9.07□□□□□ -0.96
TRAF3-206ENST00000558880 PTPN12Q05209 780 aaKnown RBP9.07□□□□□ -0.96
TRAF3-206ENST00000558880 FOXC1Q12948 553 aa9.07□□□□□ -0.96
TRAF3-206ENST00000558880 PTPRNQ16849 979 aa9.07□□□□□ -0.96
TRAF3-206ENST00000558880 KLHDC4Q8TBB5 520 aa9.07□□□□□ -0.96
TRAF3-206ENST00000558880 CELF1Q92879 486 aaKnown RBP9.07□□□□□ -0.96
TRAF3-206ENST00000558880 CCDC85AQ96PX6 553 aaPredicted RBP9.07□□□□□ -0.96
TRAF3-206ENST00000558880 RTL9Q8NET4 1388 aa9.07□□□□□ -0.96
TRAF3-206ENST00000558880 TNFRSF10AO00220 468 aa9.06□□□□□ -0.96
TRAF3-206ENST00000558880 CD2BP2O95400 341 aaKnown RBP9.06□□□□□ -0.96
TRAF3-206ENST00000558880 TGFB2P61812 414 aa9.06□□□□□ -0.96
TRAF3-206ENST00000558880 TRIM32Q13049 653 aa9.06□□□□□ -0.96
TRAF3-206ENST00000558880 C7orf43Q8WVR3 580 aa9.06□□□□□ -0.96
TRAF3-206ENST00000558880 ZNF594Q96JF6 807 aaPredicted RBP9.06□□□□□ -0.96
TRAF3-206ENST00000558880 PUS3Q9BZE2 481 aaKnown RBP9.06□□□□□ -0.96
TRAF3-206ENST00000558880 MKRN1Q9UHC7 482 aaKnown RBP9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms