RNA–Protein interactions for RNA: ENST00000558731.1

CSPG4P5-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 5, humanhuman

BASIC

Gene CSPG4P5, Length 3,730 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P5-201ENST00000558731 HMGB1P09429 215 aaKnown RBP12.73□□□□□ -0.37
CSPG4P5-201ENST00000558731 RXRBP28702 533 aa12.73□□□□□ -0.37
CSPG4P5-201ENST00000558731 MCM5P33992 734 aa12.73□□□□□ -0.37
CSPG4P5-201ENST00000558731 SF3B3Q15393 1217 aaKnown RBP12.73□□□□□ -0.37
CSPG4P5-201ENST00000558731 PRR5LQ6MZQ0 368 aa12.73□□□□□ -0.37
CSPG4P5-201ENST00000558731 RNF214Q8ND24 703 aa12.73□□□□□ -0.37
CSPG4P5-201ENST00000558731 NUP188Q5SRE5 1749 aa12.73□□□□□ -0.37
CSPG4P5-201ENST00000558731 ZNF804BA4D1E1 1349 aa12.73□□□□□ -0.37
CSPG4P5-201ENST00000558731 RBM6P78332 1123 aaKnown RBP12.73□□□□□ -0.37
CSPG4P5-201ENST00000558731 PLCB2Q00722 1185 aa12.73□□□□□ -0.37
CSPG4P5-201ENST00000558731 OTUD7BQ6GQQ9 843 aa12.73□□□□□ -0.37
CSPG4P5-201ENST00000558731 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.73□□□□□ -0.37
CSPG4P5-201ENST00000558731 CYP2D7A0A087X1C5 515 aa12.73□□□□□ -0.37
CSPG4P5-201ENST00000558731 ARID4AP29374 1257 aaPredicted RBP12.73□□□□□ -0.37
CSPG4P5-201ENST00000558731 GNL2Q13823 731 aaKnown RBP12.73□□□□□ -0.37
CSPG4P5-201ENST00000558731 FAM84BQ96KN1 310 aaPredicted RBP12.73□□□□□ -0.37
CSPG4P5-201ENST00000558731 TJP1Q07157 1748 aa12.73□□□□□ -0.37
CSPG4P5-201ENST00000558731 MAGEB6P1A0A0J9YX57 407 aa12.72□□□□□ -0.37
CSPG4P5-201ENST00000558731 GADD45BO75293 160 aaPredicted RBP12.72□□□□□ -0.37
CSPG4P5-201ENST00000558731 F13A1P00488 732 aa12.72□□□□□ -0.37
CSPG4P5-201ENST00000558731 PRDX5P30044 214 aa12.72□□□□□ -0.37
CSPG4P5-201ENST00000558731 USP48Q86UV5 1035 aa12.72□□□□□ -0.37
CSPG4P5-201ENST00000558731 PIBF1Q8WXW3 757 aa12.72□□□□□ -0.37
CSPG4P5-201ENST00000558731 PANK2Q9BZ23 570 aa12.72□□□□□ -0.37
CSPG4P5-201ENST00000558731 TMX4Q9H1E5 349 aaPredicted RBP12.72□□□□□ -0.37
CSPG4P5-201ENST00000558731 ATP6V1DQ9Y5K8 247 aa12.72□□□□□ -0.37
CSPG4P5-201ENST00000558731 IFIT3O14879 490 aaKnown RBP12.72□□□□□ -0.37
CSPG4P5-201ENST00000558731 RANBP6O60518 1105 aaKnown RBP12.72□□□□□ -0.37
CSPG4P5-201ENST00000558731 GYS1P13807 737 aa12.72□□□□□ -0.37
CSPG4P5-201ENST00000558731 SCRN1Q12765 414 aa12.72□□□□□ -0.37
CSPG4P5-201ENST00000558731 ZNF772Q68DY9 489 aaPredicted RBP12.72□□□□□ -0.37
CSPG4P5-201ENST00000558731 UBE4AQ14139 1066 aa12.72□□□□□ -0.37
CSPG4P5-201ENST00000558731 UBE3CQ15386 1083 aa12.72□□□□□ -0.37
CSPG4P5-201ENST00000558731 TBC1D10CQ8IV04 446 aa12.72□□□□□ -0.37
CSPG4P5-201ENST00000558731 IFNL3Q8IZI9 196 aa12.72□□□□□ -0.37
CSPG4P5-201ENST00000558731 KLHL34Q8N239 644 aa12.72□□□□□ -0.37
CSPG4P5-201ENST00000558731 LMBRD1Q9NUN5 540 aa12.72□□□□□ -0.37
CSPG4P5-201ENST00000558731 SYCE3A1L190 88 aa12.71□□□□□ -0.37
CSPG4P5-201ENST00000558731 PTPDC1A2A3K4 754 aa12.71□□□□□ -0.37
CSPG4P5-201ENST00000558731 PDCP20941 246 aa12.71□□□□□ -0.37
CSPG4P5-201ENST00000558731 PTMSP20962 102 aa12.71□□□□□ -0.37
CSPG4P5-201ENST00000558731 ST3GAL1Q11201 340 aa12.71□□□□□ -0.37
CSPG4P5-201ENST00000558731 TMEM67Q5HYA8 995 aa12.71□□□□□ -0.37
CSPG4P5-201ENST00000558731 OLFM4Q6UX06 510 aa12.71□□□□□ -0.37
CSPG4P5-201ENST00000558731 MFSD6Q6ZSS7 791 aa12.71□□□□□ -0.37
CSPG4P5-201ENST00000558731 STRBPQ96SI9 672 aaKnown RBP12.71□□□□□ -0.37
CSPG4P5-201ENST00000558731 ANKRD2Q9GZV1 360 aa12.71□□□□□ -0.37
CSPG4P5-201ENST00000558731 RPAP1Q9BWH6 1393 aaPredicted RBP12.71□□□□□ -0.38
CSPG4P5-201ENST00000558731 CARMIL3Q8ND23 1372 aa12.71□□□□□ -0.38
CSPG4P5-201ENST00000558731 ERICH2A1L162 156 aa12.7□□□□□ -0.38
CSPG4P5-201ENST00000558731 SMIM22K7EJ46 135 aa12.7□□□□□ -0.38
CSPG4P5-201ENST00000558731 GTF3C6Q969F1 213 aa12.7□□□□□ -0.38
CSPG4P5-201ENST00000558731 PPP1R1BQ9UD71 204 aaPredicted RBP12.7□□□□□ -0.38
CSPG4P5-201ENST00000558731 SYNE3Q6ZMZ3 975 aa12.7□□□□□ -0.38
CSPG4P5-201ENST00000558731 MTMR6Q9Y217 621 aa12.7□□□□□ -0.38
CSPG4P5-201ENST00000558731 DIXDC1Q155Q3 683 aa12.7□□□□□ -0.38
CSPG4P5-201ENST00000558731 ADGRA1Q86SQ6 560 aa12.7□□□□□ -0.38
CSPG4P5-201ENST00000558731 ARID3AQ99856 593 aa12.7□□□□□ -0.38
CSPG4P5-201ENST00000558731 CCDC69A6NI79 296 aa12.69□□□□□ -0.38
CSPG4P5-201ENST00000558731 MMP10P09238 476 aa12.69□□□□□ -0.38
CSPG4P5-201ENST00000558731 ANP32BQ92688 251 aaKnown RBP12.69□□□□□ -0.38
CSPG4P5-201ENST00000558731 GJB4Q9NTQ9 266 aa12.69□□□□□ -0.38
CSPG4P5-201ENST00000558731 NWD2Q9ULI1 1742 aa12.69□□□□□ -0.38
CSPG4P5-201ENST00000558731 USP5P45974 858 aa12.69□□□□□ -0.38
CSPG4P5-201ENST00000558731 CMTR1Q8N1G2 835 aaKnown RBP12.69□□□□□ -0.38
CSPG4P5-201ENST00000558731 BICD2Q8TD16 824 aa12.69□□□□□ -0.38
CSPG4P5-201ENST00000558731 NOL10Q9BSC4 688 aaKnown RBP12.69□□□□□ -0.38
CSPG4P5-201ENST00000558731 UBAC1Q9BSL1 405 aa12.69□□□□□ -0.38
CSPG4P5-201ENST00000558731 XRCC6P12956 609 aaKnown RBP eCLIP12.69□□□□□ -0.38
CSPG4P5-201ENST00000558731 EN1Q05925 392 aaPredicted RBP12.69□□□□□ -0.38
CSPG4P5-201ENST00000558731 GRAPQ13588 217 aa12.69□□□□□ -0.38
CSPG4P5-201ENST00000558731 ZNF827Q17R98 1081 aa12.69□□□□□ -0.38
CSPG4P5-201ENST00000558731 KLHL40Q2TBA0 621 aa12.69□□□□□ -0.38
CSPG4P5-201ENST00000558731 GRAPLQ8TC17 118 aaPredicted RBP12.69□□□□□ -0.38
CSPG4P5-201ENST00000558731 GPT2Q8TD30 523 aa12.69□□□□□ -0.38
CSPG4P5-201ENST00000558731 ISY1Q9ULR0 285 aaKnown RBP12.69□□□□□ -0.38
CSPG4P5-201ENST00000558731 RFX7Q2KHR2 1363 aa12.68□□□□□ -0.38
CSPG4P5-201ENST00000558731 PATL2C9JE40 543 aaKnown RBP12.68□□□□□ -0.38
CSPG4P5-201ENST00000558731 POLR3DP05423 398 aaPredicted RBP12.68□□□□□ -0.38
CSPG4P5-201ENST00000558731 KCNB2Q92953 911 aa12.68□□□□□ -0.38
CSPG4P5-201ENST00000558731 EPB41L4AQ9HCS5 686 aaPredicted RBP12.68□□□□□ -0.38
CSPG4P5-201ENST00000558731 KIF3AQ9Y496 699 aa12.68□□□□□ -0.38
CSPG4P5-201ENST00000558731 FOXP2O15409 715 aa12.68□□□□□ -0.38
CSPG4P5-201ENST00000558731 ATP2B1P20020 1258 aa12.68□□□□□ -0.38
CSPG4P5-201ENST00000558731 PROM2Q8N271 834 aa12.68□□□□□ -0.38
CSPG4P5-201ENST00000558731 PHKBQ93100 1093 aa12.68□□□□□ -0.38
CSPG4P5-201ENST00000558731 RBM17Q96I25 401 aaKnown RBP12.68□□□□□ -0.38
CSPG4P5-201ENST00000558731 ORC3Q9UBD5 711 aaPredicted RBP12.68□□□□□ -0.38
CSPG4P5-201ENST00000558731 TAF1P21675 1872 aa12.68□□□□□ -0.38
CSPG4P5-201ENST00000558731 NEDD4P46934 1319 aa12.68□□□□□ -0.38
CSPG4P5-201ENST00000558731 PDIA3P30101 505 aaKnown RBP12.67□□□□□ -0.38
CSPG4P5-201ENST00000558731 ADD1P35611 737 aaKnown RBP12.67□□□□□ -0.38
CSPG4P5-201ENST00000558731 METAP2P50579 478 aaKnown RBP eCLIP12.67□□□□□ -0.38
CSPG4P5-201ENST00000558731 KRT85P78386 507 aa12.67□□□□□ -0.38
CSPG4P5-201ENST00000558731 MECOMQ03112 1051 aa12.67□□□□□ -0.38
CSPG4P5-201ENST00000558731 DDR1Q08345 913 aa12.67□□□□□ -0.38
CSPG4P5-201ENST00000558731 SENP2Q9HC62 589 aa12.67□□□□□ -0.38
CSPG4P5-201ENST00000558731 PARP3Q9Y6F1 533 aa12.67□□□□□ -0.38
CSPG4P5-201ENST00000558731 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.67□□□□□ -0.38
CSPG4P5-201ENST00000558731 CYB5R4Q7L1T6 521 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms