RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 GRIK4Q16099 956 aa9.82□□□□□ -0.84
RTF1-204ENST00000558117 FAM117BQ6P1L5 589 aa9.82□□□□□ -0.84
RTF1-204ENST00000558117 ALKBH8Q96BT7 664 aaKnown RBP9.82□□□□□ -0.84
RTF1-204ENST00000558117 ASB16Q96NS5 453 aa9.82□□□□□ -0.84
RTF1-204ENST00000558117 SRA1Q9HD15 236 aaKnown RBP9.82□□□□□ -0.84
RTF1-204ENST00000558117 TCOF1Q13428 1488 aaKnown RBP9.82□□□□□ -0.84
RTF1-204ENST00000558117 ATP10AO60312 1499 aa9.81□□□□□ -0.84
RTF1-204ENST00000558117 C1QTNF9BB2RNN3 333 aa9.81□□□□□ -0.84
RTF1-204ENST00000558117 MSTNO14793 375 aa9.81□□□□□ -0.84
RTF1-204ENST00000558117 TREHO43280 583 aa9.81□□□□□ -0.84
RTF1-204ENST00000558117 TRPA1O75762 1119 aa9.81□□□□□ -0.84
RTF1-204ENST00000558117 MAP4K3Q8IVH8 894 aa9.81□□□□□ -0.84
RTF1-204ENST00000558117 ZKSCAN3Q9BRR0 538 aa9.81□□□□□ -0.84
RTF1-204ENST00000558117 LATS2Q9NRM7 1088 aa9.81□□□□□ -0.84
RTF1-204ENST00000558117 PLA2R1Q13018 1463 aa9.8□□□□□ -0.84
RTF1-204ENST00000558117 CARMIL1Q5VZK9 1371 aa9.8□□□□□ -0.84
RTF1-204ENST00000558117 CHRNA4P43681 627 aa9.8□□□□□ -0.84
RTF1-204ENST00000558117 BAG6P46379 1132 aa9.8□□□□□ -0.84
RTF1-204ENST00000558117 PLCB3Q01970 1234 aa9.8□□□□□ -0.84
RTF1-204ENST00000558117 ADAMTSL4Q6UY14 1074 aa9.8□□□□□ -0.84
RTF1-204ENST00000558117 CD163Q86VB7 1156 aa9.8□□□□□ -0.84
RTF1-204ENST00000558117 FBXO11Q86XK2 927 aa9.8□□□□□ -0.84
RTF1-204ENST00000558117 ZSCAN29Q8IWY8 852 aaPredicted RBP9.8□□□□□ -0.84
RTF1-204ENST00000558117 TMEM102Q8N9M5 508 aaPredicted RBP9.8□□□□□ -0.84
RTF1-204ENST00000558117 POP1Q99575 1024 aaKnown RBP9.8□□□□□ -0.84
RTF1-204ENST00000558117 C9orf84Q5VXU9 1444 aa9.8□□□□□ -0.84
RTF1-204ENST00000558117 C3P01024 1663 aa9.8□□□□□ -0.84
RTF1-204ENST00000558117 C9orf172C9J069 976 aa9.79□□□□□ -0.84
RTF1-204ENST00000558117 EIF1AYO14602 144 aaKnown RBP9.79□□□□□ -0.84
RTF1-204ENST00000558117 GALNT12Q8IXK2 581 aa9.79□□□□□ -0.84
RTF1-204ENST00000558117 CSRNP1Q96S65 589 aa9.79□□□□□ -0.84
RTF1-204ENST00000558117 DNAJC25Q9H1X3 360 aa9.79□□□□□ -0.84
RTF1-204ENST00000558117 USP21Q9UK80 565 aa9.79□□□□□ -0.84
RTF1-204ENST00000558117 ATP10BO94823 1461 aa9.79□□□□□ -0.84
RTF1-204ENST00000558117 SHANK2Q9UPX8 1470 aa9.79□□□□□ -0.84
RTF1-204ENST00000558117 RAPGEF2Q9Y4G8 1499 aa9.79□□□□□ -0.84
RTF1-204ENST00000558117 HECW1Q76N89 1606 aa9.78□□□□□ -0.84
RTF1-204ENST00000558117 LINC01387J3KSC0 135 aa9.78□□□□□ -0.84
RTF1-204ENST00000558117 NFKBIEO00221 500 aa9.78□□□□□ -0.84
RTF1-204ENST00000558117 CDC25BP30305 580 aa9.78□□□□□ -0.84
RTF1-204ENST00000558117 PEAR1Q5VY43 1037 aaPredicted RBP9.78□□□□□ -0.84
RTF1-204ENST00000558117 HHIPQ96QV1 700 aa9.78□□□□□ -0.84
RTF1-204ENST00000558117 NRG1Q02297 640 aaPredicted RBP9.77□□□□□ -0.85
RTF1-204ENST00000558117 TXNDC11Q6PKC3 985 aa9.77□□□□□ -0.85
RTF1-204ENST00000558117 DNAJC14Q6Y2X3 702 aaPredicted RBP9.77□□□□□ -0.85
RTF1-204ENST00000558117 ASAP3Q8TDY4 903 aa9.77□□□□□ -0.85
RTF1-204ENST00000558117 SPOCK3Q9BQ16 436 aa9.77□□□□□ -0.85
RTF1-204ENST00000558117 ADAM19Q9H013 955 aa9.77□□□□□ -0.85
RTF1-204ENST00000558117 SH2B1Q9NRF2 756 aaPredicted RBP9.77□□□□□ -0.85
RTF1-204ENST00000558117 ANKRD33BA6NCL7 494 aa9.76□□□□□ -0.85
RTF1-204ENST00000558117 H3BRJ5 948 aa9.76□□□□□ -0.85
RTF1-204ENST00000558117 DEAF1O75398 565 aaPredicted RBP9.76□□□□□ -0.85
RTF1-204ENST00000558117 ITGB2P05107 769 aa9.76□□□□□ -0.85
RTF1-204ENST00000558117 EPHA1P21709 976 aa9.76□□□□□ -0.85
RTF1-204ENST00000558117 GATA4P43694 442 aa9.76□□□□□ -0.85
RTF1-204ENST00000558117 CCDC27Q2M243 656 aa9.76□□□□□ -0.85
RTF1-204ENST00000558117 SHISA2Q6UWI4 295 aa9.76□□□□□ -0.85
RTF1-204ENST00000558117 NXPE3Q969Y0 559 aa9.76□□□□□ -0.85
RTF1-204ENST00000558117 NPHS2Q9NP85 383 aa9.76□□□□□ -0.85
RTF1-204ENST00000558117 SELPP16109 830 aa9.75□□□□□ -0.85
RTF1-204ENST00000558117 FMR1Q06787 632 aaKnown RBP eCLIP9.75□□□□□ -0.85
RTF1-204ENST00000558117 SETDB1Q15047 1291 aa9.75□□□□□ -0.85
RTF1-204ENST00000558117 IGF2-ASQ6U949 168 aa9.75□□□□□ -0.85
RTF1-204ENST00000558117 BSNDQ8WZ55 320 aa9.75□□□□□ -0.85
RTF1-204ENST00000558117 CCDC74AQ96AQ1 378 aa9.75□□□□□ -0.85
RTF1-204ENST00000558117 LENG1Q96BZ8 264 aaPredicted RBP9.75□□□□□ -0.85
RTF1-204ENST00000558117 SETDB2Q96T68 719 aa9.75□□□□□ -0.85
RTF1-204ENST00000558117 BHLHE41Q9C0J9 482 aaPredicted RBP9.75□□□□□ -0.85
RTF1-204ENST00000558117 LIN7BQ9HAP6 207 aa9.75□□□□□ -0.85
RTF1-204ENST00000558117 A0A1W2PP55 124 aa9.74□□□□□ -0.85
RTF1-204ENST00000558117 MAPK8P45983 427 aa9.74□□□□□ -0.85
RTF1-204ENST00000558117 NPATQ14207 1427 aa9.73□□□□□ -0.85
RTF1-204ENST00000558117 KIF27Q86VH2 1401 aa9.73□□□□□ -0.85
RTF1-204ENST00000558117 PNMA6FA0A0J9YX94 578 aa9.73□□□□□ -0.85
RTF1-204ENST00000558117 FSCN2O14926 492 aa9.73□□□□□ -0.85
RTF1-204ENST00000558117 GADD45BO75293 160 aaPredicted RBP9.73□□□□□ -0.85
RTF1-204ENST00000558117 PROCP04070 461 aa9.73□□□□□ -0.85
RTF1-204ENST00000558117 ARL4DP49703 201 aa9.73□□□□□ -0.85
RTF1-204ENST00000558117 ENOX2Q16206 610 aaKnown RBP9.73□□□□□ -0.85
RTF1-204ENST00000558117 KLHL23Q8NBE8 558 aa9.73□□□□□ -0.85
RTF1-204ENST00000558117 EPS8L3Q8TE67 593 aaKnown RBP9.73□□□□□ -0.85
RTF1-204ENST00000558117 CARD10Q9BWT7 1032 aa9.73□□□□□ -0.85
RTF1-204ENST00000558117 EHD4Q9H223 541 aa9.73□□□□□ -0.85
RTF1-204ENST00000558117 SEC31BQ9NQW1 1179 aa9.73□□□□□ -0.85
RTF1-204ENST00000558117 WWC3Q9ULE0 1092 aa9.73□□□□□ -0.85
RTF1-204ENST00000558117 SOX13Q9UN79 622 aa9.73□□□□□ -0.85
RTF1-204ENST00000558117 SETBP1Q9Y6X0 1596 aa9.72□□□□□ -0.85
RTF1-204ENST00000558117 DLL1O00548 723 aa9.72□□□□□ -0.85
RTF1-204ENST00000558117 P4HBP07237 508 aaKnown RBP9.72□□□□□ -0.85
RTF1-204ENST00000558117 ADGRE1Q14246 886 aa9.72□□□□□ -0.85
RTF1-204ENST00000558117 MBTPS1Q14703 1052 aa9.72□□□□□ -0.85
RTF1-204ENST00000558117 MRPL18Q9H0U6 180 aaKnown RBP9.72□□□□□ -0.85
RTF1-204ENST00000558117 TMCO4Q5TGY1 634 aa9.71□□□□□ -0.86
RTF1-204ENST00000558117 KIAA0319Q5VV43 1072 aa9.71□□□□□ -0.86
RTF1-204ENST00000558117 PI16Q6UXB8 463 aa9.71□□□□□ -0.86
RTF1-204ENST00000558117 TXNRD3Q86VQ6 643 aa9.71□□□□□ -0.86
RTF1-204ENST00000558117 SLC7A3Q8WY07 619 aa9.71□□□□□ -0.86
RTF1-204ENST00000558117 WNT8BQ93098 351 aa9.71□□□□□ -0.86
RTF1-204ENST00000558117 NLRP2Q9NX02 1062 aa9.71□□□□□ -0.86
RTF1-204ENST00000558117 CD68P34810 354 aaPredicted RBP9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms