RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 PTPN21Q16825 1174 aa15.02□□□□□ -0.01
LDLR-207ENST00000558013 KIF6Q6ZMV9 814 aa15.02□□□□□ -0.01
LDLR-207ENST00000558013 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.02□□□□□ -0.01
LDLR-207ENST00000558013 WWC3Q9ULE0 1092 aa15.02□□□□□ -0.01
LDLR-207ENST00000558013 RIC1Q4ADV7 1423 aa15.01□□□□□ -0.01
LDLR-207ENST00000558013 SPTLC2O15270 562 aa15.01□□□□□ -0.01
LDLR-207ENST00000558013 CDC27P30260 824 aa15.01□□□□□ -0.01
LDLR-207ENST00000558013 NLRP10Q86W26 655 aa15.01□□□□□ -0.01
LDLR-207ENST00000558013 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.01□□□□□ -0.01
LDLR-207ENST00000558013 CTAGE5O15320 804 aa15.01□□□□□ -0.01
LDLR-207ENST00000558013 SKILP12757 684 aa15.01□□□□□ -0.01
LDLR-207ENST00000558013 MICU3Q86XE3 530 aa15.01□□□□□ -0.01
LDLR-207ENST00000558013 ANO10Q9NW15 660 aa15.01□□□□□ -0.01
LDLR-207ENST00000558013 NBPF11Q86T75 865 aa15.01□□□□□ -0.01
LDLR-207ENST00000558013 MROH7-TTC4A0A0A0MT08 1334 aa15.01□□□□□ -0.01
LDLR-207ENST00000558013 CCDC69A6NI79 296 aa15□□□□□ -0.01
LDLR-207ENST00000558013 ZFYP08048 801 aaPredicted RBP15□□□□□ -0.01
LDLR-207ENST00000558013 KIF23Q02241 960 aaPredicted RBP15□□□□□ -0.01
LDLR-207ENST00000558013 SARM1Q6SZW1 724 aa15□□□□□ -0.01
LDLR-207ENST00000558013 KIAA1468Q9P260 1216 aa15□□□□□ -0.01
LDLR-207ENST00000558013 ZNF532Q9HCE3 1301 aa15□□□□□ -0.01
LDLR-207ENST00000558013 ADD2P35612 726 aa15□□□□□ -0.01
LDLR-207ENST00000558013 AXDND1Q5T1B0 1012 aaPredicted RBP15□□□□□ -0.01
LDLR-207ENST00000558013 GIGYF2Q6Y7W6 1299 aaKnown RBP15□□□□□ -0.01
LDLR-207ENST00000558013 CEP57L1Q8IYX8 460 aa15□□□□□ -0.01
LDLR-207ENST00000558013 MRFAP1L1Q96HT8 127 aa15□□□□□ -0.01
LDLR-207ENST00000558013 CCDC94Q9BW85 323 aaPredicted RBP15□□□□□ -0.01
LDLR-207ENST00000558013 SLAIN2Q9P270 581 aa15□□□□□ -0.01
LDLR-207ENST00000558013 TRMT112Q9UI30 125 aaKnown RBP15□□□□□ -0.01
LDLR-207ENST00000558013 ZBTB1Q9Y2K1 713 aa15□□□□□ -0.01
LDLR-207ENST00000558013 TACC3Q9Y6A5 838 aa15□□□□□ -0.01
LDLR-207ENST00000558013 TNS2Q63HR2 1409 aa15□□□□□ -0.01
LDLR-207ENST00000558013 IRS4O14654 1257 aaPredicted RBP14.99□□□□□ -0.01
LDLR-207ENST00000558013 ZNF202O95125 648 aa14.99□□□□□ -0.01
LDLR-207ENST00000558013 TRIM28Q13263 835 aaKnown RBP14.99□□□□□ -0.01
LDLR-207ENST00000558013 ABCC6O95255 1503 aa14.99□□□□□ -0.01
LDLR-207ENST00000558013 CCDC102BQ68D86 513 aa14.99□□□□□ -0.01
LDLR-207ENST00000558013 FBXL16Q8N461 479 aa14.99□□□□□ -0.01
LDLR-207ENST00000558013 CLIC6Q96NY7 704 aa14.99□□□□□ -0.01
LDLR-207ENST00000558013 MAP3K15Q6ZN16 1313 aa14.99□□□□□ -0.01
LDLR-207ENST00000558013 DCCP43146 1447 aa14.99□□□□□ -0.01
LDLR-207ENST00000558013 UBR2Q8IWV8 1755 aa14.99□□□□□ -0.01
LDLR-207ENST00000558013 PFKFB1P16118 471 aa14.99□□□□□ -0.01
LDLR-207ENST00000558013 U2AF2P26368 475 aaKnown RBP eCLIP14.99□□□□□ -0.013e-6■■■□□ 15.4
LDLR-207ENST00000558013 CCZ1BP86790 482 aa14.99□□□□□ -0.01
LDLR-207ENST00000558013 CCZ1P86791 482 aaPredicted RBP14.99□□□□□ -0.01
LDLR-207ENST00000558013 ANO1Q5XXA6 986 aa14.99□□□□□ -0.01
LDLR-207ENST00000558013 SYNE3Q6ZMZ3 975 aa14.99□□□□□ -0.01
LDLR-207ENST00000558013 VGLL2Q8N8G2 317 aa14.99□□□□□ -0.01
LDLR-207ENST00000558013 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.99□□□□□ -0.01
LDLR-207ENST00000558013 V9GYY5 206 aaPredicted RBP14.99□□□□□ -0.01
LDLR-207ENST00000558013 CTSWP56202 376 aa14.98□□□□□ -0.01
LDLR-207ENST00000558013 CTDSPL2Q05D32 466 aa14.98□□□□□ -0.01
LDLR-207ENST00000558013 ATL3Q6DD88 541 aa14.98□□□□□ -0.01
LDLR-207ENST00000558013 MTERF4Q7Z6M4 381 aaKnown RBP14.98□□□□□ -0.01
LDLR-207ENST00000558013 CCDC82Q8N4S0 544 aa14.98□□□□□ -0.01
LDLR-207ENST00000558013 ALG1Q9BT22 464 aa14.98□□□□□ -0.01
LDLR-207ENST00000558013 POLR3EQ9NVU0 708 aa14.98□□□□□ -0.01
LDLR-207ENST00000558013 CTIFO43310 598 aaKnown RBP14.98□□□□□ -0.01
LDLR-207ENST00000558013 CAVIN2O95810 425 aa14.98□□□□□ -0.01
LDLR-207ENST00000558013 NCBP1Q09161 790 aaKnown RBP14.98□□□□□ -0.01
LDLR-207ENST00000558013 SPECC1Q5M775 1068 aa14.98□□□□□ -0.01
LDLR-207ENST00000558013 CMTR1Q8N1G2 835 aaKnown RBP14.98□□□□□ -0.01
LDLR-207ENST00000558013 XPO4Q9C0E2 1151 aaKnown RBP14.98□□□□□ -0.01
LDLR-207ENST00000558013 MYH15Q9Y2K3 1946 aa14.97□□□□□ -0.01
LDLR-207ENST00000558013 STARD3NLO95772 234 aa14.97□□□□□ -0.01
LDLR-207ENST00000558013 PDE6AP16499 860 aa14.97□□□□□ -0.01
LDLR-207ENST00000558013 CDC25BP30305 580 aa14.97□□□□□ -0.01
LDLR-207ENST00000558013 VPS37DQ86XT2 251 aa14.97□□□□□ -0.01
LDLR-207ENST00000558013 PDCL2Q8N4E4 241 aa14.97□□□□□ -0.01
LDLR-207ENST00000558013 PLA2G12BQ9BX93 195 aa14.97□□□□□ -0.01
LDLR-207ENST00000558013 IFNKQ9P0W0 207 aa14.97□□□□□ -0.01
LDLR-207ENST00000558013 ANGEL1Q9UNK9 670 aaKnown RBP14.97□□□□□ -0.01
LDLR-207ENST00000558013 A0A0G2JS52 829 aa14.97□□□□□ -0.01
LDLR-207ENST00000558013 A0A1W2PQ27 194 aa14.97□□□□□ -0.01
LDLR-207ENST00000558013 A0A1W2PQ64 194 aa14.97□□□□□ -0.01
LDLR-207ENST00000558013 A0A1W2PQD8 194 aa14.97□□□□□ -0.01
LDLR-207ENST00000558013 ANKRD18BA2A2Z9 1011 aa14.97□□□□□ -0.01
LDLR-207ENST00000558013 DHX16O60231 1041 aaKnown RBP14.97□□□□□ -0.01
LDLR-207ENST00000558013 SMC2O95347 1197 aa14.97□□□□□ -0.01
LDLR-207ENST00000558013 SLC3A2P08195 630 aaKnown RBP14.97□□□□□ -0.01
LDLR-207ENST00000558013 ATP1A3P13637 1013 aa14.97□□□□□ -0.01
LDLR-207ENST00000558013 METAP2P50579 478 aaKnown RBP eCLIP14.97□□□□□ -0.015e-7■□□□□ 8.9
LDLR-207ENST00000558013 TRDNQ13061 729 aa14.97□□□□□ -0.01
LDLR-207ENST00000558013 APOA5Q6Q788 366 aa14.97□□□□□ -0.01
LDLR-207ENST00000558013 ZKSCAN3Q9BRR0 538 aa14.97□□□□□ -0.01
LDLR-207ENST00000558013 PRKAB2O43741 272 aa14.97□□□□□ -0.01
LDLR-207ENST00000558013 RANBP6O60518 1105 aaKnown RBP14.97□□□□□ -0.01
LDLR-207ENST00000558013 PDE8BO95263 885 aa14.97□□□□□ -0.01
LDLR-207ENST00000558013 LMOD1P29536 600 aaPredicted RBP14.97□□□□□ -0.01
LDLR-207ENST00000558013 LRRFIP1Q32MZ4 808 aaKnown RBP14.97□□□□□ -0.01
LDLR-207ENST00000558013 KRT40Q6A162 431 aa14.97□□□□□ -0.01
LDLR-207ENST00000558013 KCNG4Q8TDN1 519 aa14.97□□□□□ -0.01
LDLR-207ENST00000558013 MYO5AQ9Y4I1 1855 aaKnown RBP14.97□□□□□ -0.01
LDLR-207ENST00000558013 SOS2Q07890 1332 aaPredicted RBP14.96□□□□□ -0.01
LDLR-207ENST00000558013 UBN2Q6ZU65 1347 aa14.96□□□□□ -0.01
LDLR-207ENST00000558013 SMIM22K7EJ46 135 aa14.96□□□□□ -0.01
LDLR-207ENST00000558013 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.96□□□□□ -0.012e-9■■□□□ 12.3
LDLR-207ENST00000558013 BTG4Q9NY30 223 aa14.96□□□□□ -0.01
LDLR-207ENST00000558013 PARP4Q9UKK3 1724 aaKnown RBP14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms