RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 FTOQ9C0B1 505 aaKnown RBP eCLIP7□□□□□ -1.29
SYNE2-225ENST00000557060 SENP2Q9HC62 589 aa7□□□□□ -1.29
SYNE2-225ENST00000557060 SLC4A4Q9Y6R1 1079 aa7□□□□□ -1.29
SYNE2-225ENST00000557060 COL22A1Q8NFW1 1626 aaPredicted RBP6.99□□□□□ -1.29
SYNE2-225ENST00000557060 CPLX1O14810 134 aa6.99□□□□□ -1.29
SYNE2-225ENST00000557060 CAPN15O75808 1086 aa6.99□□□□□ -1.29
SYNE2-225ENST00000557060 UQCRFS1P1P0C7P4 283 aa6.99□□□□□ -1.29
SYNE2-225ENST00000557060 NFIXQ14938 502 aa6.99□□□□□ -1.29
SYNE2-225ENST00000557060 CAMK4Q16566 473 aa6.99□□□□□ -1.29
SYNE2-225ENST00000557060 ADGRA1Q86SQ6 560 aa6.99□□□□□ -1.29
SYNE2-225ENST00000557060 TBC1D10CQ8IV04 446 aa6.99□□□□□ -1.29
SYNE2-225ENST00000557060 CMTR1Q8N1G2 835 aaKnown RBP6.99□□□□□ -1.29
SYNE2-225ENST00000557060 CNBD1Q8NA66 436 aa6.99□□□□□ -1.29
SYNE2-225ENST00000557060 KCNB2Q92953 911 aa6.99□□□□□ -1.29
SYNE2-225ENST00000557060 CTNNA3Q9UI47 895 aa6.99□□□□□ -1.29
SYNE2-225ENST00000557060 MTMR7Q9Y216 660 aa6.99□□□□□ -1.29
SYNE2-225ENST00000557060 SPATA31A6Q5VVP1 1343 aa6.99□□□□□ -1.29
SYNE2-225ENST00000557060 PTPDC1A2A3K4 754 aa6.99□□□□□ -1.29
SYNE2-225ENST00000557060 GOLGA6L4A6NEF3 574 aa6.99□□□□□ -1.29
SYNE2-225ENST00000557060 FGFR2P21802 821 aa6.99□□□□□ -1.29
SYNE2-225ENST00000557060 MSL1Q68DK7 614 aa6.99□□□□□ -1.29
SYNE2-225ENST00000557060 CLEC4GQ6UXB4 293 aa6.99□□□□□ -1.29
SYNE2-225ENST00000557060 GTF3C6Q969F1 213 aa6.99□□□□□ -1.29
SYNE2-225ENST00000557060 FBXW7Q969H0 707 aa6.99□□□□□ -1.29
SYNE2-225ENST00000557060 DYNLL1P63167 89 aaKnown RBP6.99□□□□□ -1.29
SYNE2-225ENST00000557060 ZSCAN25Q6NSZ9 544 aa6.99□□□□□ -1.29
SYNE2-225ENST00000557060 POLR3DP05423 398 aaPredicted RBP6.98□□□□□ -1.29
SYNE2-225ENST00000557060 NASPP49321 788 aaPredicted RBP6.98□□□□□ -1.29
SYNE2-225ENST00000557060 EVX2Q03828 476 aa6.98□□□□□ -1.29
SYNE2-225ENST00000557060 KRT27Q7Z3Y8 459 aa6.98□□□□□ -1.29
SYNE2-225ENST00000557060 NCOA7Q8NI08 942 aa6.98□□□□□ -1.29
SYNE2-225ENST00000557060 COL4A1P02462 1669 aa6.98□□□□□ -1.29
SYNE2-225ENST00000557060 UBE2Q2LH0YL09 131 aa6.98□□□□□ -1.29
SYNE2-225ENST00000557060 ARID4AP29374 1257 aaPredicted RBP6.98□□□□□ -1.29
SYNE2-225ENST00000557060 PRDX5P30044 214 aa6.98□□□□□ -1.29
SYNE2-225ENST00000557060 PDIA3P30101 505 aaKnown RBP6.98□□□□□ -1.29
SYNE2-225ENST00000557060 MCM5P33992 734 aa6.98□□□□□ -1.29
SYNE2-225ENST00000557060 MRE11P49959 708 aa6.98□□□□□ -1.29
SYNE2-225ENST00000557060 PIBF1Q8WXW3 757 aa6.98□□□□□ -1.29
SYNE2-225ENST00000557060 PHKBQ93100 1093 aa6.98□□□□□ -1.29
SYNE2-225ENST00000557060 AIFM3Q96NN9 605 aa6.98□□□□□ -1.29
SYNE2-225ENST00000557060 STRBPQ96SI9 672 aaKnown RBP6.98□□□□□ -1.29
SYNE2-225ENST00000557060 AATFQ9NY61 560 aaKnown RBP eCLIP6.98□□□□□ -1.29
SYNE2-225ENST00000557060 ATP6V1DQ9Y5K8 247 aa6.98□□□□□ -1.29
SYNE2-225ENST00000557060 NRAPQ86VF7 1730 aa6.98□□□□□ -1.29
SYNE2-225ENST00000557060 HMGB1P09429 215 aaKnown RBP6.97□□□□□ -1.29
SYNE2-225ENST00000557060 ADD1P35611 737 aaKnown RBP6.97□□□□□ -1.29
SYNE2-225ENST00000557060 GIMAP6Q6P9H5 292 aa6.97□□□□□ -1.29
SYNE2-225ENST00000557060 OLFM4Q6UX06 510 aa6.97□□□□□ -1.29
SYNE2-225ENST00000557060 CYB5R4Q7L1T6 521 aa6.97□□□□□ -1.29
SYNE2-225ENST00000557060 IFNL3Q8IZI9 196 aa6.97□□□□□ -1.29
SYNE2-225ENST00000557060 NUP133Q8WUM0 1156 aa6.97□□□□□ -1.29
SYNE2-225ENST00000557060 FAM84BQ96KN1 310 aaPredicted RBP6.97□□□□□ -1.29
SYNE2-225ENST00000557060 NBPF3Q9H094 633 aa6.97□□□□□ -1.29
SYNE2-225ENST00000557060 EPB41L4AQ9HCS5 686 aaPredicted RBP6.97□□□□□ -1.29
SYNE2-225ENST00000557060 GNL3LQ9NVN8 582 aaKnown RBP6.97□□□□□ -1.29
SYNE2-225ENST00000557060 NEDD4P46934 1319 aa6.97□□□□□ -1.29
SYNE2-225ENST00000557060 TCHHQ07283 1943 aa6.97□□□□□ -1.29
SYNE2-225ENST00000557060 FSD2A1L4K1 749 aa6.97□□□□□ -1.29
SYNE2-225ENST00000557060 CTDNEP1O95476 244 aa6.97□□□□□ -1.29
SYNE2-225ENST00000557060 PDCP20941 246 aa6.97□□□□□ -1.29
SYNE2-225ENST00000557060 PTMSP20962 102 aa6.97□□□□□ -1.29
SYNE2-225ENST00000557060 ANTXR2P58335 489 aa6.97□□□□□ -1.29
SYNE2-225ENST00000557060 TSGA10IPQ3SY00 556 aa6.97□□□□□ -1.29
SYNE2-225ENST00000557060 CLEC17AQ6ZS10 378 aa6.97□□□□□ -1.29
SYNE2-225ENST00000557060 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.97□□□□□ -1.29
SYNE2-225ENST00000557060 RPGRQ92834 1020 aaKnown RBP6.97□□□□□ -1.29
SYNE2-225ENST00000557060 IL17RAQ96F46 866 aa6.97□□□□□ -1.29
SYNE2-225ENST00000557060 NYXQ9GZU5 481 aa6.97□□□□□ -1.29
SYNE2-225ENST00000557060 RBSNQ9H1K0 784 aa6.97□□□□□ -1.29
SYNE2-225ENST00000557060 BSDC1Q9NW68 430 aaPredicted RBP6.97□□□□□ -1.29
SYNE2-225ENST00000557060 CNTNAP4Q9C0A0 1308 aa6.97□□□□□ -1.29
SYNE2-225ENST00000557060 hCG_1642624A0A1W2PR95 340 aa6.97□□□□□ -1.29
SYNE2-225ENST00000557060 IFIT3O14879 490 aaKnown RBP6.97□□□□□ -1.29
SYNE2-225ENST00000557060 KRT85P78386 507 aa6.97□□□□□ -1.29
SYNE2-225ENST00000557060 EXOSC10Q01780 885 aaKnown RBP6.97□□□□□ -1.29
SYNE2-225ENST00000557060 UBE3CQ15386 1083 aa6.97□□□□□ -1.29
SYNE2-225ENST00000557060 TMEM67Q5HYA8 995 aa6.97□□□□□ -1.29
SYNE2-225ENST00000557060 NAA16Q6N069 864 aaPredicted RBP6.97□□□□□ -1.29
SYNE2-225ENST00000557060 NSUN7Q8NE18 718 aaKnown RBP6.97□□□□□ -1.29
SYNE2-225ENST00000557060 BICD2Q8TD16 824 aa6.97□□□□□ -1.29
SYNE2-225ENST00000557060 SPATA32Q96LK8 384 aa6.97□□□□□ -1.29
SYNE2-225ENST00000557060 TCRBV5S4A2TA0A5A2 114 aa6.96□□□□□ -1.29
SYNE2-225ENST00000557060 RIMBP2O15034 1052 aa6.96□□□□□ -1.29
SYNE2-225ENST00000557060 RANBP6O60518 1105 aaKnown RBP6.96□□□□□ -1.29
SYNE2-225ENST00000557060 APBA3O96018 575 aa6.96□□□□□ -1.29
SYNE2-225ENST00000557060 HIBADHP31937 336 aaKnown RBP6.96□□□□□ -1.29
SYNE2-225ENST00000557060 TTC6Q86TZ1 520 aa6.96□□□□□ -1.29
SYNE2-225ENST00000557060 CKAP2LQ8IYA6 745 aa6.96□□□□□ -1.29
SYNE2-225ENST00000557060 ANP32BQ92688 251 aaKnown RBP6.96□□□□□ -1.29
SYNE2-225ENST00000557060 ZSWIM5Q9P217 1185 aa6.96□□□□□ -1.29
SYNE2-225ENST00000557060 MAGEB6P1A0A0J9YX57 407 aa6.96□□□□□ -1.3
SYNE2-225ENST00000557060 GSG1L2A8MUP6 293 aa6.96□□□□□ -1.3
SYNE2-225ENST00000557060 F8W031 263 aaPredicted RBP6.96□□□□□ -1.3
SYNE2-225ENST00000557060 C6orf229H3BNL8 230 aa6.96□□□□□ -1.3
SYNE2-225ENST00000557060 MBD3O95983 291 aa6.96□□□□□ -1.3
SYNE2-225ENST00000557060 SF3B3Q15393 1217 aaKnown RBP6.96□□□□□ -1.3
SYNE2-225ENST00000557060 DIXDC1Q155Q3 683 aa6.96□□□□□ -1.3
SYNE2-225ENST00000557060 MFSD6Q6ZSS7 791 aa6.96□□□□□ -1.3
SYNE2-225ENST00000557060 TRIM44Q96DX7 344 aaPredicted RBP6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms