RNA–Protein interactions for RNA: ENST00000556445.1

SRP54-211, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 530 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-211ENST00000556445 DNAJC25Q9H1X3 360 aa7.55□□□□□ -1.2
SRP54-211ENST00000556445 LIN7BQ9HAP6 207 aa7.55□□□□□ -1.2
SRP54-211ENST00000556445 NPHS2Q9NP85 383 aa7.55□□□□□ -1.2
SRP54-211ENST00000556445 CUX2O14529 1486 aa7.55□□□□□ -1.2
SRP54-211ENST00000556445 ABCA10Q8WWZ4 1543 aa7.54□□□□□ -1.2
SRP54-211ENST00000556445 ESRRAP11474 423 aaPredicted RBP7.54□□□□□ -1.2
SRP54-211ENST00000556445 C19orf57Q0VDD7 668 aa7.54□□□□□ -1.2
SRP54-211ENST00000556445 DUOXA2Q1HG44 320 aa7.54□□□□□ -1.2
SRP54-211ENST00000556445 SPRED3Q2MJR0 410 aa7.54□□□□□ -1.2
SRP54-211ENST00000556445 SLC7A3Q8WY07 619 aa7.54□□□□□ -1.2
SRP54-211ENST00000556445 CCDC74AQ96AQ1 378 aa7.54□□□□□ -1.2
SRP54-211ENST00000556445 CSRNP1Q96S65 589 aa7.54□□□□□ -1.2
SRP54-211ENST00000556445 CHMP4AQ9BY43 222 aa7.54□□□□□ -1.2
SRP54-211ENST00000556445 RAPGEF2Q9Y4G8 1499 aa7.54□□□□□ -1.2
SRP54-211ENST00000556445 CLIP1P30622 1438 aa7.53□□□□□ -1.2
SRP54-211ENST00000556445 A0A096LPE4 126 aa7.53□□□□□ -1.2
SRP54-211ENST00000556445 A0A1W2PPZ6 126 aa7.53□□□□□ -1.2
SRP54-211ENST00000556445 NLRP12P59046 1061 aa7.53□□□□□ -1.2
SRP54-211ENST00000556445 DSC3Q14574 896 aa7.53□□□□□ -1.2
SRP54-211ENST00000556445 UBL7Q96S82 380 aaPredicted RBP7.53□□□□□ -1.2
SRP54-211ENST00000556445 PCGF6Q9BYE7 350 aa7.53□□□□□ -1.2
SRP54-211ENST00000556445 SOX17Q9H6I2 414 aaPredicted RBP7.53□□□□□ -1.2
SRP54-211ENST00000556445 POLA1P09884 1462 aaPredicted RBP7.52□□□□□ -1.21
SRP54-211ENST00000556445 GLB1P16278 677 aa7.52□□□□□ -1.21
SRP54-211ENST00000556445 MAPK1P28482 360 aa7.52□□□□□ -1.21
SRP54-211ENST00000556445 TREHO43280 583 aa7.51□□□□□ -1.21
SRP54-211ENST00000556445 ARL4DP49703 201 aa7.51□□□□□ -1.21
SRP54-211ENST00000556445 ZNF423Q2M1K9 1284 aa7.51□□□□□ -1.21
SRP54-211ENST00000556445 PRSS36Q5K4E3 855 aa7.51□□□□□ -1.21
SRP54-211ENST00000556445 EHD4Q9H223 541 aa7.51□□□□□ -1.21
SRP54-211ENST00000556445 CARMIL1Q5VZK9 1371 aa7.5□□□□□ -1.21
SRP54-211ENST00000556445 ITPKAP23677 461 aa7.5□□□□□ -1.21
SRP54-211ENST00000556445 PCDH1Q08174 1060 aa7.5□□□□□ -1.21
SRP54-211ENST00000556445 PRPF40BQ6NWY9 871 aaKnown RBP7.5□□□□□ -1.21
SRP54-211ENST00000556445 PRR23CQ6ZRP0 262 aa7.5□□□□□ -1.21
SRP54-211ENST00000556445 EPS8L3Q8TE67 593 aaKnown RBP7.5□□□□□ -1.21
SRP54-211ENST00000556445 NRSN2Q9GZP1 204 aa7.5□□□□□ -1.21
SRP54-211ENST00000556445 CLEC4MQ9H2X3 399 aaPredicted RBP7.5□□□□□ -1.21
SRP54-211ENST00000556445 ABCB6Q9NP58 842 aa7.5□□□□□ -1.21
SRP54-211ENST00000556445 URB2Q14146 1524 aaKnown RBP7.5□□□□□ -1.21
SRP54-211ENST00000556445 CUL7Q14999 1698 aa7.5□□□□□ -1.21
SRP54-211ENST00000556445 KIF21AQ7Z4S6 1674 aa7.5□□□□□ -1.21
SRP54-211ENST00000556445 LOC100289279A0A1B0GTE1 492 aa7.49□□□□□ -1.21
SRP54-211ENST00000556445 ARMC10Q8N2F6 343 aa7.49□□□□□ -1.21
SRP54-211ENST00000556445 GLIS3Q8NEA6 775 aa7.49□□□□□ -1.21
SRP54-211ENST00000556445 FAM46AQ96IP4 442 aaKnown RBP7.49□□□□□ -1.21
SRP54-211ENST00000556445 CEP41Q9BYV8 373 aa7.49□□□□□ -1.21
SRP54-211ENST00000556445 ZNF576Q9H609 170 aa7.49□□□□□ -1.21
SRP54-211ENST00000556445 MRC2Q9UBG0 1479 aa7.49□□□□□ -1.21
SRP54-211ENST00000556445 MEGF11A6BM72 1044 aa7.48□□□□□ -1.21
SRP54-211ENST00000556445 DLGAP3O95886 979 aa7.48□□□□□ -1.21
SRP54-211ENST00000556445 GRM2Q14416 872 aa7.48□□□□□ -1.21
SRP54-211ENST00000556445 ENOX2Q16206 610 aaKnown RBP7.48□□□□□ -1.21
SRP54-211ENST00000556445 PI16Q6UXB8 463 aa7.48□□□□□ -1.21
SRP54-211ENST00000556445 VPS8Q8N3P4 1428 aa7.48□□□□□ -1.21
SRP54-211ENST00000556445 RUSC1Q9BVN2 902 aa7.48□□□□□ -1.21
SRP54-211ENST00000556445 RNF208Q9H0X6 261 aa7.48□□□□□ -1.21
SRP54-211ENST00000556445 WDR97A6NE52 1622 aa7.48□□□□□ -1.21
SRP54-211ENST00000556445 GADD45BO75293 160 aaPredicted RBP7.47□□□□□ -1.21
SRP54-211ENST00000556445 B3GALT4O96024 378 aa7.47□□□□□ -1.21
SRP54-211ENST00000556445 PLCB3Q01970 1234 aa7.47□□□□□ -1.21
SRP54-211ENST00000556445 GSTM4Q03013 218 aa7.47□□□□□ -1.21
SRP54-211ENST00000556445 PTPN12Q05209 780 aaKnown RBP7.47□□□□□ -1.21
SRP54-211ENST00000556445 ASB16Q96NS5 453 aa7.47□□□□□ -1.21
SRP54-211ENST00000556445 USP26Q9BXU7 913 aa7.47□□□□□ -1.21
SRP54-211ENST00000556445 PNMA6FA0A0J9YX94 578 aa7.46□□□□□ -1.22
SRP54-211ENST00000556445 TMEM238LA0A1B0GVL6 79 aa7.46□□□□□ -1.22
SRP54-211ENST00000556445 PATL2C9JE40 543 aaKnown RBP7.46□□□□□ -1.22
SRP54-211ENST00000556445 FMR1Q06787 632 aaKnown RBP eCLIP7.46□□□□□ -1.22
SRP54-211ENST00000556445 UVSSAQ2YD98 709 aa7.46□□□□□ -1.22
SRP54-211ENST00000556445 ANKRD34AQ69YU3 496 aa7.46□□□□□ -1.22
SRP54-211ENST00000556445 TMPRSS13Q9BYE2 586 aa7.46□□□□□ -1.22
SRP54-211ENST00000556445 RAD54L2Q9Y4B4 1467 aa7.46□□□□□ -1.22
SRP54-211ENST00000556445 PREPP48147 710 aa7.45□□□□□ -1.22
SRP54-211ENST00000556445 ZMYM1Q5SVZ6 1142 aa7.45□□□□□ -1.22
SRP54-211ENST00000556445 ZSCAN29Q8IWY8 852 aaPredicted RBP7.45□□□□□ -1.22
SRP54-211ENST00000556445 UTP4Q969X6 686 aaKnown RBP7.45□□□□□ -1.22
SRP54-211ENST00000556445 MYRFLQ96LU7 910 aa7.45□□□□□ -1.22
SRP54-211ENST00000556445 TRIM56Q9BRZ2 755 aaKnown RBP7.45□□□□□ -1.22
SRP54-211ENST00000556445 USP35Q9P2H5 1018 aa7.45□□□□□ -1.22
SRP54-211ENST00000556445 TRAK1Q9UPV9 953 aa7.45□□□□□ -1.22
SRP54-211ENST00000556445 ABCA5Q8WWZ7 1642 aa7.45□□□□□ -1.22
SRP54-211ENST00000556445 GAPVD1Q14C86 1478 aa7.44□□□□□ -1.22
SRP54-211ENST00000556445 EIF4EBP3O60516 100 aaPredicted RBP7.44□□□□□ -1.22
SRP54-211ENST00000556445 CTSBP07858 339 aa7.44□□□□□ -1.22
SRP54-211ENST00000556445 RPS26P11Q5JNZ5 115 aaPredicted RBP7.44□□□□□ -1.22
SRP54-211ENST00000556445 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.44□□□□□ -1.22
SRP54-211ENST00000556445 SMG8Q8ND04 991 aaKnown RBP7.44□□□□□ -1.22
SRP54-211ENST00000556445 SUGCTQ9HAC7 445 aa7.44□□□□□ -1.22
SRP54-211ENST00000556445 RAXQ9Y2V3 346 aa7.44□□□□□ -1.22
SRP54-211ENST00000556445 IFT140Q96RY7 1462 aa7.43□□□□□ -1.22
SRP54-211ENST00000556445 WDR62O43379 1518 aa7.43□□□□□ -1.22
SRP54-211ENST00000556445 TARBP1Q13395 1621 aaKnown RBP7.43□□□□□ -1.22
SRP54-211ENST00000556445 DHX15O43143 795 aaKnown RBP7.43□□□□□ -1.22
SRP54-211ENST00000556445 TIAF1O95411 115 aa7.43□□□□□ -1.22
SRP54-211ENST00000556445 FSTP19883 344 aa7.43□□□□□ -1.22
SRP54-211ENST00000556445 FAAP100Q0VG06 881 aa7.43□□□□□ -1.22
SRP54-211ENST00000556445 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.43□□□□□ -1.22
SRP54-211ENST00000556445 FDX2Q6P4F2 183 aa7.43□□□□□ -1.22
SRP54-211ENST00000556445 SETDB2Q96T68 719 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms