RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 SHISA5Q8N114 240 aa8.25□□□□□ -1.09
SCFD1-217ENST00000555953 FBXL6Q8N531 539 aa8.25□□□□□ -1.09
SCFD1-217ENST00000555953 FBLIM1Q8WUP2 373 aa8.25□□□□□ -1.09
SCFD1-217ENST00000555953 FAM95CA0A1B0GW59 222 aa8.24□□□□□ -1.09
SCFD1-217ENST00000555953 NDUFB5O43674 189 aa8.24□□□□□ -1.09
SCFD1-217ENST00000555953 MAOBP27338 520 aa8.24□□□□□ -1.09
SCFD1-217ENST00000555953 USP11P51784 963 aa8.24□□□□□ -1.09
SCFD1-217ENST00000555953 KIAA0319Q5VV43 1072 aa8.24□□□□□ -1.09
SCFD1-217ENST00000555953 FAM129BQ96TA1 746 aa8.24□□□□□ -1.09
SCFD1-217ENST00000555953 PIM2Q9P1W9 311 aa8.24□□□□□ -1.09
SCFD1-217ENST00000555953 EIF4EBP3O60516 100 aaPredicted RBP8.23□□□□□ -1.09
SCFD1-217ENST00000555953 ADH5P11766 374 aa8.23□□□□□ -1.09
SCFD1-217ENST00000555953 IRAK1P51617 712 aa8.23□□□□□ -1.09
SCFD1-217ENST00000555953 NFKBIBQ15653 356 aa8.23□□□□□ -1.09
SCFD1-217ENST00000555953 TRIM56Q9BRZ2 755 aaKnown RBP8.23□□□□□ -1.09
SCFD1-217ENST00000555953 NPHS2Q9NP85 383 aa8.23□□□□□ -1.09
SCFD1-217ENST00000555953 ATG3Q9NT62 314 aa8.23□□□□□ -1.09
SCFD1-217ENST00000555953 ECEL1O95672 775 aa8.22□□□□□ -1.09
SCFD1-217ENST00000555953 NEFLP07196 543 aa8.22□□□□□ -1.09
SCFD1-217ENST00000555953 POU4F3Q15319 338 aa8.22□□□□□ -1.09
SCFD1-217ENST00000555953 PAOXQ6QHF9 649 aa8.22□□□□□ -1.09
SCFD1-217ENST00000555953 TXNDC2Q86VQ3 553 aa8.22□□□□□ -1.09
SCFD1-217ENST00000555953 EHD4Q9H223 541 aa8.22□□□□□ -1.09
SCFD1-217ENST00000555953 ZNF576Q9H609 170 aa8.22□□□□□ -1.09
SCFD1-217ENST00000555953 CPNE3O75131 537 aaKnown RBP8.21□□□□□ -1.1
SCFD1-217ENST00000555953 WNT11O96014 354 aa8.21□□□□□ -1.1
SCFD1-217ENST00000555953 B3GALT4O96024 378 aa8.21□□□□□ -1.1
SCFD1-217ENST00000555953 IGHA2P01877 340 aa8.21□□□□□ -1.1
SCFD1-217ENST00000555953 CYP11A1P05108 521 aa8.21□□□□□ -1.1
SCFD1-217ENST00000555953 ADMP35318 185 aa8.21□□□□□ -1.1
SCFD1-217ENST00000555953 PDE3BQ13370 1112 aa8.21□□□□□ -1.1
SCFD1-217ENST00000555953 GIMAP7Q8NHV1 300 aa8.21□□□□□ -1.1
SCFD1-217ENST00000555953 EZH1Q92800 747 aaPredicted RBP8.21□□□□□ -1.1
SCFD1-217ENST00000555953 OSBPL1AQ9BXW6 950 aa8.21□□□□□ -1.1
SCFD1-217ENST00000555953 LEMD3Q9Y2U8 911 aa8.21□□□□□ -1.1
SCFD1-217ENST00000555953 ACTL7BQ9Y614 415 aa8.21□□□□□ -1.1
SCFD1-217ENST00000555953 GPR182O15218 404 aa8.2□□□□□ -1.1
SCFD1-217ENST00000555953 ITPKAP23677 461 aa8.2□□□□□ -1.1
SCFD1-217ENST00000555953 KRTAP1-3Q8IUG1 177 aa8.2□□□□□ -1.1
SCFD1-217ENST00000555953 PRKAG2Q9UGJ0 569 aa8.2□□□□□ -1.1
SCFD1-217ENST00000555953 FOSL1P15407 271 aa8.19□□□□□ -1.1
SCFD1-217ENST00000555953 MSMPQ1L6U9 139 aa8.19□□□□□ -1.1
SCFD1-217ENST00000555953 AKAP4Q5JQC9 854 aa8.19□□□□□ -1.1
SCFD1-217ENST00000555953 ARID3AQ99856 593 aa8.19□□□□□ -1.1
SCFD1-217ENST00000555953 YIPF2Q9BWQ6 316 aa8.19□□□□□ -1.1
SCFD1-217ENST00000555953 EIF1AYO14602 144 aaKnown RBP8.18□□□□□ -1.1
SCFD1-217ENST00000555953 TAL1P17542 331 aaPredicted RBP8.18□□□□□ -1.1
SCFD1-217ENST00000555953 RAB6AP20340 208 aa8.18□□□□□ -1.1
SCFD1-217ENST00000555953 CPSF6Q16630 551 aaKnown RBP eCLIP8.18□□□□□ -1.1
SCFD1-217ENST00000555953 ZAR1Q86SH2 424 aa8.18□□□□□ -1.1
SCFD1-217ENST00000555953 RETREG2Q8NC44 543 aa8.18□□□□□ -1.1
SCFD1-217ENST00000555953 GATA6Q92908 595 aa8.18□□□□□ -1.1
SCFD1-217ENST00000555953 CCDC74AQ96AQ1 378 aa8.18□□□□□ -1.1
SCFD1-217ENST00000555953 TBC1D32Q96NH3 1257 aa8.18□□□□□ -1.1
SCFD1-217ENST00000555953 CITED4Q96RK1 184 aa8.18□□□□□ -1.1
SCFD1-217ENST00000555953 CORO1BQ9BR76 489 aa8.18□□□□□ -1.1
SCFD1-217ENST00000555953 NIF3L1Q9GZT8 377 aa8.18□□□□□ -1.1
SCFD1-217ENST00000555953 ABCB6Q9NP58 842 aa8.18□□□□□ -1.1
SCFD1-217ENST00000555953 FAM105AQ9NUU6 356 aa8.18□□□□□ -1.1
SCFD1-217ENST00000555953 NFICP08651 508 aa8.17□□□□□ -1.1
SCFD1-217ENST00000555953 HP1BP3Q5SSJ5 553 aaPredicted RBP8.17□□□□□ -1.1
SCFD1-217ENST00000555953 LCE3BQ5TA77 95 aa8.17□□□□□ -1.1
SCFD1-217ENST00000555953 DYMQ7RTS9 669 aa8.17□□□□□ -1.1
SCFD1-217ENST00000555953 KRTAP19-1Q8IUB9 90 aa8.17□□□□□ -1.1
SCFD1-217ENST00000555953 METTL22Q9BUU2 404 aaPredicted RBP8.17□□□□□ -1.1
SCFD1-217ENST00000555953 SEMA6CQ9H3T2 930 aa8.17□□□□□ -1.1
SCFD1-217ENST00000555953 RAD18Q9NS91 495 aa8.17□□□□□ -1.1
SCFD1-217ENST00000555953 AP4E1Q9UPM8 1137 aa8.17□□□□□ -1.1
SCFD1-217ENST00000555953 FAM170BA6NMN3 283 aa8.16□□□□□ -1.1
SCFD1-217ENST00000555953 PAX4O43316 350 aa8.16□□□□□ -1.1
SCFD1-217ENST00000555953 PRPF40BQ6NWY9 871 aaKnown RBP8.16□□□□□ -1.1
SCFD1-217ENST00000555953 DDX54Q8TDD1 881 aaKnown RBP8.16□□□□□ -1.1
SCFD1-217ENST00000555953 TMC1Q8TDI8 760 aa8.16□□□□□ -1.1
SCFD1-217ENST00000555953 DNAJC25Q9H1X3 360 aa8.16□□□□□ -1.1
SCFD1-217ENST00000555953 ACSS3Q9H6R3 686 aa8.16□□□□□ -1.1
SCFD1-217ENST00000555953 ZFYVE1Q9HBF4 777 aa8.16□□□□□ -1.1
SCFD1-217ENST00000555953 PTPN12Q05209 780 aaKnown RBP8.15□□□□□ -1.1
SCFD1-217ENST00000555953 GSX1Q9H4S2 264 aaPredicted RBP8.15□□□□□ -1.1
SCFD1-217ENST00000555953 ADGRE2Q9UHX3 823 aa8.15□□□□□ -1.1
SCFD1-217ENST00000555953 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.14□□□□□ -1.11
SCFD1-217ENST00000555953 TMEM238LA0A1B0GVL6 79 aa8.14□□□□□ -1.11
SCFD1-217ENST00000555953 AOC2O75106 756 aa8.14□□□□□ -1.11
SCFD1-217ENST00000555953 GADD45BO75293 160 aaPredicted RBP8.14□□□□□ -1.11
SCFD1-217ENST00000555953 FAAP100Q0VG06 881 aa8.14□□□□□ -1.11
SCFD1-217ENST00000555953 MAP7Q14244 749 aa8.14□□□□□ -1.11
SCFD1-217ENST00000555953 GRM2Q14416 872 aa8.14□□□□□ -1.11
SCFD1-217ENST00000555953 NFXL1Q6ZNB6 911 aa8.14□□□□□ -1.11
SCFD1-217ENST00000555953 ABI1Q8IZP0 508 aa8.14□□□□□ -1.11
SCFD1-217ENST00000555953 GLIS3Q8NEA6 775 aa8.14□□□□□ -1.11
SCFD1-217ENST00000555953 WDR18Q9BV38 432 aa8.14□□□□□ -1.11
SCFD1-217ENST00000555953 CCDC39Q9UFE4 941 aa8.14□□□□□ -1.11
SCFD1-217ENST00000555953 ANGEL1Q9UNK9 670 aaKnown RBP8.14□□□□□ -1.11
SCFD1-217ENST00000555953 CYP26A1O43174 497 aa8.13□□□□□ -1.11
SCFD1-217ENST00000555953 DYNC1LI2O43237 492 aaPredicted RBP8.13□□□□□ -1.11
SCFD1-217ENST00000555953 PRNPP04156 253 aa8.13□□□□□ -1.11
SCFD1-217ENST00000555953 ASPAP45381 313 aa8.13□□□□□ -1.11
SCFD1-217ENST00000555953 AP3B2Q13367 1082 aa8.13□□□□□ -1.11
SCFD1-217ENST00000555953 PDE3AQ14432 1141 aa8.13□□□□□ -1.11
SCFD1-217ENST00000555953 RPS26P11Q5JNZ5 115 aaPredicted RBP8.13□□□□□ -1.11
SCFD1-217ENST00000555953 EPS8L3Q8TE67 593 aaKnown RBP8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms