RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 BHLHE41Q9C0J9 482 aaPredicted RBP7.94□□□□□ -1.14
SCFD1-216ENST00000555550 LRRC4CQ9HCJ2 640 aa7.94□□□□□ -1.14
SCFD1-216ENST00000555550 C8AP07357 584 aa7.93□□□□□ -1.14
SCFD1-216ENST00000555550 JAG1P78504 1218 aa7.93□□□□□ -1.14
SCFD1-216ENST00000555550 FLCNQ8NFG4 579 aa7.93□□□□□ -1.14
SCFD1-216ENST00000555550 EZH1Q92800 747 aaPredicted RBP7.93□□□□□ -1.14
SCFD1-216ENST00000555550 PBXIP1Q96AQ6 731 aa7.93□□□□□ -1.14
SCFD1-216ENST00000555550 ZC3H7BQ9UGR2 993 aaKnown RBP7.93□□□□□ -1.14
SCFD1-216ENST00000555550 ACTL7BQ9Y614 415 aa7.93□□□□□ -1.14
SCFD1-216ENST00000555550 POLR3DP05423 398 aaPredicted RBP7.92□□□□□ -1.14
SCFD1-216ENST00000555550 CTSBP07858 339 aa7.92□□□□□ -1.14
SCFD1-216ENST00000555550 RAB6AP20340 208 aa7.92□□□□□ -1.14
SCFD1-216ENST00000555550 PAK6Q9NQU5 681 aaPredicted RBP7.92□□□□□ -1.14
SCFD1-216ENST00000555550 ADH5P11766 374 aa7.91□□□□□ -1.14
SCFD1-216ENST00000555550 ZNF423Q2M1K9 1284 aa7.91□□□□□ -1.14
SCFD1-216ENST00000555550 DUSP27Q5VZP5 1158 aa7.91□□□□□ -1.14
SCFD1-216ENST00000555550 ZNF765Q7L2R6 523 aa7.91□□□□□ -1.14
SCFD1-216ENST00000555550 DYMQ7RTS9 669 aa7.91□□□□□ -1.14
SCFD1-216ENST00000555550 SNX29Q8TEQ0 813 aa7.91□□□□□ -1.14
SCFD1-216ENST00000555550 YIPF2Q9BWQ6 316 aa7.91□□□□□ -1.14
SCFD1-216ENST00000555550 NRSN2Q9GZP1 204 aa7.91□□□□□ -1.14
SCFD1-216ENST00000555550 ITGB5P18084 799 aa7.9□□□□□ -1.14
SCFD1-216ENST00000555550 MAOBP27338 520 aa7.9□□□□□ -1.14
SCFD1-216ENST00000555550 SPRED3Q2MJR0 410 aa7.9□□□□□ -1.14
SCFD1-216ENST00000555550 AKAP4Q5JQC9 854 aa7.9□□□□□ -1.14
SCFD1-216ENST00000555550 ALKBH2Q6NS38 261 aa7.9□□□□□ -1.14
SCFD1-216ENST00000555550 POU5F2Q8N7G0 328 aa7.9□□□□□ -1.14
SCFD1-216ENST00000555550 LGR6Q9HBX8 967 aa7.9□□□□□ -1.14
SCFD1-216ENST00000555550 PCDH1Q08174 1060 aa7.89□□□□□ -1.15
SCFD1-216ENST00000555550 SEMA6CQ9H3T2 930 aa7.89□□□□□ -1.15
SCFD1-216ENST00000555550 ZFYVE28Q9HCC9 887 aa7.89□□□□□ -1.15
SCFD1-216ENST00000555550 FAM105AQ9NUU6 356 aa7.89□□□□□ -1.15
SCFD1-216ENST00000555550 AMOTL2Q9Y2J4 779 aa7.89□□□□□ -1.15
SCFD1-216ENST00000555550 A0A096LPE4 126 aa7.88□□□□□ -1.15
SCFD1-216ENST00000555550 A0A1W2PPZ6 126 aa7.88□□□□□ -1.15
SCFD1-216ENST00000555550 ECEL1O95672 775 aa7.88□□□□□ -1.15
SCFD1-216ENST00000555550 JUNBP17275 347 aaPredicted RBP7.88□□□□□ -1.15
SCFD1-216ENST00000555550 MAP7Q14244 749 aa7.88□□□□□ -1.15
SCFD1-216ENST00000555550 POU4F3Q15319 338 aa7.88□□□□□ -1.15
SCFD1-216ENST00000555550 AGBL5Q8NDL9 886 aa7.88□□□□□ -1.15
SCFD1-216ENST00000555550 RAD18Q9NS91 495 aa7.88□□□□□ -1.15
SCFD1-216ENST00000555550 CCDC87Q9NVE4 849 aa7.88□□□□□ -1.15
SCFD1-216ENST00000555550 DYNC1LI2O43237 492 aaPredicted RBP7.87□□□□□ -1.15
SCFD1-216ENST00000555550 FZD6O60353 706 aa7.87□□□□□ -1.15
SCFD1-216ENST00000555550 GRIA4P48058 902 aa7.87□□□□□ -1.15
SCFD1-216ENST00000555550 EHHADHQ08426 723 aa7.87□□□□□ -1.15
SCFD1-216ENST00000555550 ASPAP45381 313 aa7.86□□□□□ -1.15
SCFD1-216ENST00000555550 ZNF574Q6ZN55 896 aaPredicted RBP7.86□□□□□ -1.15
SCFD1-216ENST00000555550 SPRED2Q7Z698 418 aa7.86□□□□□ -1.15
SCFD1-216ENST00000555550 CLEC4MQ9H2X3 399 aaPredicted RBP7.86□□□□□ -1.15
SCFD1-216ENST00000555550 ACSS3Q9H6R3 686 aa7.86□□□□□ -1.15
SCFD1-216ENST00000555550 A0A1W2PP55 124 aa7.85□□□□□ -1.15
SCFD1-216ENST00000555550 CYP11A1P05108 521 aa7.85□□□□□ -1.15
SCFD1-216ENST00000555550 NPR3P17342 541 aa7.85□□□□□ -1.15
SCFD1-216ENST00000555550 SSFA2P28290 1259 aa7.85□□□□□ -1.15
SCFD1-216ENST00000555550 USP5P45974 858 aa7.85□□□□□ -1.15
SCFD1-216ENST00000555550 CYP27A1Q02318 531 aa7.85□□□□□ -1.15
SCFD1-216ENST00000555550 ZNF648Q5T619 568 aaPredicted RBP7.85□□□□□ -1.15
SCFD1-216ENST00000555550 BCL7CQ8WUZ0 217 aaPredicted RBP7.85□□□□□ -1.15
SCFD1-216ENST00000555550 CCDC97Q96F63 343 aaPredicted RBP7.85□□□□□ -1.15
SCFD1-216ENST00000555550 C1GALT1Q9NS00 363 aa7.85□□□□□ -1.15
SCFD1-216ENST00000555550 AP4E1Q9UPM8 1137 aa7.85□□□□□ -1.15
SCFD1-216ENST00000555550 DAGLAQ9Y4D2 1042 aa7.85□□□□□ -1.15
SCFD1-216ENST00000555550 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.84□□□□□ -1.15
SCFD1-216ENST00000555550 FAM13AO94988 1023 aa7.84□□□□□ -1.15
SCFD1-216ENST00000555550 PAPLNO95428 1278 aa7.84□□□□□ -1.15
SCFD1-216ENST00000555550 BNIP3Q12983 259 aa7.84□□□□□ -1.15
SCFD1-216ENST00000555550 SEZ6L2Q6UXD5 910 aa7.84□□□□□ -1.15
SCFD1-216ENST00000555550 CCNJLQ8IV13 435 aa7.84□□□□□ -1.15
SCFD1-216ENST00000555550 TCF12Q99081 682 aa7.84□□□□□ -1.15
SCFD1-216ENST00000555550 LIN7BQ9HAP6 207 aa7.84□□□□□ -1.15
SCFD1-216ENST00000555550 ANO2Q9NQ90 1003 aa7.84□□□□□ -1.15
SCFD1-216ENST00000555550 SLC5A6Q9Y289 635 aa7.84□□□□□ -1.15
SCFD1-216ENST00000555550 PLCL1Q15111 1095 aa7.83□□□□□ -1.16
SCFD1-216ENST00000555550 OGFOD3Q6PK18 319 aa7.83□□□□□ -1.16
SCFD1-216ENST00000555550 C14orf37Q86TY3 774 aa7.83□□□□□ -1.16
SCFD1-216ENST00000555550 TRIM56Q9BRZ2 755 aaKnown RBP7.83□□□□□ -1.16
SCFD1-216ENST00000555550 EIF4EBP3O60516 100 aaPredicted RBP7.82□□□□□ -1.16
SCFD1-216ENST00000555550 ZNF124Q15973 351 aa7.82□□□□□ -1.16
SCFD1-216ENST00000555550 ZNF792Q3KQV3 632 aa7.82□□□□□ -1.16
SCFD1-216ENST00000555550 GJD3Q8N144 294 aa7.82□□□□□ -1.16
SCFD1-216ENST00000555550 CORO1BQ9BR76 489 aa7.82□□□□□ -1.16
SCFD1-216ENST00000555550 FKBP4Q02790 459 aaKnown RBP eCLIP7.81□□□□□ -1.16
SCFD1-216ENST00000555550 USPL1Q5W0Q7 1092 aa7.81□□□□□ -1.16
SCFD1-216ENST00000555550 WFDC3Q8IUB2 231 aa7.81□□□□□ -1.16
SCFD1-216ENST00000555550 GSX1Q9H4S2 264 aaPredicted RBP7.81□□□□□ -1.16
SCFD1-216ENST00000555550 SERPINA10Q9UK55 444 aa7.81□□□□□ -1.16
SCFD1-216ENST00000555550 PPP1R9AQ9ULJ8 1098 aa7.81□□□□□ -1.16
SCFD1-216ENST00000555550 CARMIL2Q6F5E8 1435 aa7.8□□□□□ -1.16
SCFD1-216ENST00000555550 ARID3CA6NKF2 412 aa7.8□□□□□ -1.16
SCFD1-216ENST00000555550 TMEM88BA6NKF7 163 aa7.8□□□□□ -1.16
SCFD1-216ENST00000555550 AOC2O75106 756 aa7.8□□□□□ -1.16
SCFD1-216ENST00000555550 ABL1P00519 1130 aa7.8□□□□□ -1.16
SCFD1-216ENST00000555550 GALNT12Q8IXK2 581 aa7.8□□□□□ -1.16
SCFD1-216ENST00000555550 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.8□□□□□ -1.16
SCFD1-216ENST00000555550 CARNS1A5YM72 827 aa7.79□□□□□ -1.16
SCFD1-216ENST00000555550 PDE3AQ14432 1141 aa7.79□□□□□ -1.16
SCFD1-216ENST00000555550 ZFYVE1Q9HBF4 777 aa7.79□□□□□ -1.16
SCFD1-216ENST00000555550 ZNF211Q13398 564 aaPredicted RBP7.78□□□□□ -1.16
SCFD1-216ENST00000555550 HP1BP3Q5SSJ5 553 aaPredicted RBP7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms