RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 BMP3P12645 472 aa2.74□□□□□ -1.97
PRPF39-208ENST00000554785 CABP4P57796 275 aa2.74□□□□□ -1.97
PRPF39-208ENST00000554785 CPSF6Q16630 551 aaKnown RBP eCLIP2.74□□□□□ -1.97
PRPF39-208ENST00000554785 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.74□□□□□ -1.97
PRPF39-208ENST00000554785 B4GALNT3Q6L9W6 998 aa2.74□□□□□ -1.97
PRPF39-208ENST00000554785 CCNJLQ8IV13 435 aa2.74□□□□□ -1.97
PRPF39-208ENST00000554785 GALNT12Q8IXK2 581 aa2.74□□□□□ -1.97
PRPF39-208ENST00000554785 WNT8BQ93098 351 aa2.74□□□□□ -1.97
PRPF39-208ENST00000554785 UTP4Q969X6 686 aaKnown RBP2.74□□□□□ -1.97
PRPF39-208ENST00000554785 FAM129BQ96TA1 746 aa2.74□□□□□ -1.97
PRPF39-208ENST00000554785 OSGEPQ9NPF4 335 aa2.74□□□□□ -1.97
PRPF39-208ENST00000554785 MTMR7Q9Y216 660 aa2.74□□□□□ -1.97
PRPF39-208ENST00000554785 OAS3Q9Y6K5 1087 aaKnown RBP2.74□□□□□ -1.97
PRPF39-208ENST00000554785 A0A096LPE4 126 aa2.73□□□□□ -1.97
PRPF39-208ENST00000554785 A0A1W2PPZ6 126 aa2.73□□□□□ -1.97
PRPF39-208ENST00000554785 PATL2C9JE40 543 aaKnown RBP2.73□□□□□ -1.97
PRPF39-208ENST00000554785 ADAMTS4O75173 837 aa2.73□□□□□ -1.97
PRPF39-208ENST00000554785 SPINK2P20155 84 aa2.73□□□□□ -1.97
PRPF39-208ENST00000554785 KCNA1Q09470 495 aa2.73□□□□□ -1.97
PRPF39-208ENST00000554785 NFIAQ12857 509 aa2.73□□□□□ -1.97
PRPF39-208ENST00000554785 DTX1Q86Y01 620 aa2.73□□□□□ -1.97
PRPF39-208ENST00000554785 ZDHHC13Q8IUH4 622 aa2.73□□□□□ -1.97
PRPF39-208ENST00000554785 FAM20CQ8IXL6 584 aa2.73□□□□□ -1.97
PRPF39-208ENST00000554785 ASIC4Q96FT7 647 aa2.73□□□□□ -1.97
PRPF39-208ENST00000554785 RUSC1Q9BVN2 902 aa2.73□□□□□ -1.97
PRPF39-208ENST00000554785 USP26Q9BXU7 913 aa2.73□□□□□ -1.97
PRPF39-208ENST00000554785 TMPRSS13Q9BYE2 586 aa2.73□□□□□ -1.97
PRPF39-208ENST00000554785 NPHS2Q9NP85 383 aa2.73□□□□□ -1.97
PRPF39-208ENST00000554785 BRPF3Q9ULD4 1205 aa2.73□□□□□ -1.97
PRPF39-208ENST00000554785 PRR19A6NJB7 356 aa2.72□□□□□ -1.97
PRPF39-208ENST00000554785 FAM177BA6PVY3 158 aa2.72□□□□□ -1.97
PRPF39-208ENST00000554785 TIAF1O95411 115 aa2.72□□□□□ -1.97
PRPF39-208ENST00000554785 GSTM4Q03013 218 aa2.72□□□□□ -1.97
PRPF39-208ENST00000554785 SGO2Q562F6 1265 aa2.72□□□□□ -1.97
PRPF39-208ENST00000554785 PI16Q6UXB8 463 aa2.72□□□□□ -1.97
PRPF39-208ENST00000554785 PPP1R3FQ6ZSY5 799 aaPredicted RBP2.72□□□□□ -1.97
PRPF39-208ENST00000554785 BEND4Q6ZU67 534 aa2.72□□□□□ -1.97
PRPF39-208ENST00000554785 DBNDD2Q9BQY9 259 aa2.72□□□□□ -1.97
PRPF39-208ENST00000554785 NIF3L1Q9GZT8 377 aa2.72□□□□□ -1.97
PRPF39-208ENST00000554785 RNF208Q9H0X6 261 aa2.72□□□□□ -1.97
PRPF39-208ENST00000554785 LIN7BQ9HAP6 207 aa2.72□□□□□ -1.97
PRPF39-208ENST00000554785 MEGF11A6BM72 1044 aa2.72□□□□□ -1.97
PRPF39-208ENST00000554785 EIF1AYO14602 144 aaKnown RBP2.72□□□□□ -1.97
PRPF39-208ENST00000554785 JUNBP17275 347 aaPredicted RBP2.72□□□□□ -1.97
PRPF39-208ENST00000554785 PCDH1Q08174 1060 aa2.72□□□□□ -1.97
PRPF39-208ENST00000554785 RNF43Q68DV7 783 aa2.72□□□□□ -1.97
PRPF39-208ENST00000554785 CDPF1Q6NVV7 123 aa2.72□□□□□ -1.97
PRPF39-208ENST00000554785 POU5F2Q8N7G0 328 aa2.72□□□□□ -1.97
PRPF39-208ENST00000554785 C12orf50Q8NA57 414 aaPredicted RBP2.72□□□□□ -1.97
PRPF39-208ENST00000554785 EPS8L3Q8TE67 593 aaKnown RBP2.72□□□□□ -1.97
PRPF39-208ENST00000554785 TRIM56Q9BRZ2 755 aaKnown RBP2.72□□□□□ -1.97
PRPF39-208ENST00000554785 CLEC4MQ9H2X3 399 aaPredicted RBP2.72□□□□□ -1.97
PRPF39-208ENST00000554785 KCNF1Q9H3M0 494 aa2.72□□□□□ -1.97
PRPF39-208ENST00000554785 HIF3AQ9Y2N7 669 aa2.72□□□□□ -1.97
PRPF39-208ENST00000554785 SOWAHDA6NJG2 315 aa2.71□□□□□ -1.98
PRPF39-208ENST00000554785 NDUFB5O43674 189 aa2.71□□□□□ -1.98
PRPF39-208ENST00000554785 HOXA10P31260 410 aaPredicted RBP2.71□□□□□ -1.98
PRPF39-208ENST00000554785 ARL4DP49703 201 aa2.71□□□□□ -1.98
PRPF39-208ENST00000554785 KIAA0319Q5VV43 1072 aa2.71□□□□□ -1.98
PRPF39-208ENST00000554785 NUTM2GQ5VZR2 741 aa2.71□□□□□ -1.98
PRPF39-208ENST00000554785 ANKRD34AQ69YU3 496 aa2.71□□□□□ -1.98
PRPF39-208ENST00000554785 FDX2Q6P4F2 183 aa2.71□□□□□ -1.98
PRPF39-208ENST00000554785 CLEC10AQ8IUN9 316 aa2.71□□□□□ -1.98
PRPF39-208ENST00000554785 GLIS3Q8NEA6 775 aa2.71□□□□□ -1.98
PRPF39-208ENST00000554785 CCDC74AQ96AQ1 378 aa2.71□□□□□ -1.98
PRPF39-208ENST00000554785 FAM83CQ9BQN1 747 aa2.71□□□□□ -1.98
PRPF39-208ENST00000554785 SOX17Q9H6I2 414 aaPredicted RBP2.71□□□□□ -1.98
PRPF39-208ENST00000554785 ABCB6Q9NP58 842 aa2.71□□□□□ -1.98
PRPF39-208ENST00000554785 PODXL2Q9NZ53 605 aa2.71□□□□□ -1.98
PRPF39-208ENST00000554785 SART1O43290 800 aaKnown RBP2.71□□□□□ -1.98
PRPF39-208ENST00000554785 EIF4EBP3O60516 100 aaPredicted RBP2.71□□□□□ -1.98
PRPF39-208ENST00000554785 CPNE3O75131 537 aaKnown RBP2.71□□□□□ -1.98
PRPF39-208ENST00000554785 MAOBP27338 520 aa2.71□□□□□ -1.98
PRPF39-208ENST00000554785 MAP4P27816 1152 aaKnown RBP2.71□□□□□ -1.98
PRPF39-208ENST00000554785 ZNF157P51786 506 aaPredicted RBP2.71□□□□□ -1.98
PRPF39-208ENST00000554785 FAAP100Q0VG06 881 aa2.71□□□□□ -1.98
PRPF39-208ENST00000554785 EXOSC6Q5RKV6 272 aaKnown RBP2.71□□□□□ -1.98
PRPF39-208ENST00000554785 C2CD4AQ8NCU7 369 aaPredicted RBP2.71□□□□□ -1.98
PRPF39-208ENST00000554785 SMG8Q8ND04 991 aaKnown RBP2.71□□□□□ -1.98
PRPF39-208ENST00000554785 SHKBP1Q8TBC3 707 aa2.71□□□□□ -1.98
PRPF39-208ENST00000554785 TMC1Q8TDI8 760 aa2.71□□□□□ -1.98
PRPF39-208ENST00000554785 FBLIM1Q8WUP2 373 aa2.71□□□□□ -1.98
PRPF39-208ENST00000554785 MFSD14AQ96MC6 490 aa2.71□□□□□ -1.98
PRPF39-208ENST00000554785 FBXL18Q96ME1 805 aa2.71□□□□□ -1.98
PRPF39-208ENST00000554785 ZNF576Q9H609 170 aa2.71□□□□□ -1.98
PRPF39-208ENST00000554785 SUGCTQ9HAC7 445 aa2.71□□□□□ -1.98
PRPF39-208ENST00000554785 B3GALT4O96024 378 aa2.7□□□□□ -1.98
PRPF39-208ENST00000554785 ITPKAP23677 461 aa2.7□□□□□ -1.98
PRPF39-208ENST00000554785 ADMP35318 185 aa2.7□□□□□ -1.98
PRPF39-208ENST00000554785 SOX4Q06945 474 aaPredicted RBP2.7□□□□□ -1.98
PRPF39-208ENST00000554785 GRM2Q14416 872 aa2.7□□□□□ -1.98
PRPF39-208ENST00000554785 TMC7Q7Z402 723 aa2.7□□□□□ -1.98
PRPF39-208ENST00000554785 FBXL6Q8N531 539 aa2.7□□□□□ -1.98
PRPF39-208ENST00000554785 WDR89Q96FK6 387 aaPredicted RBP2.7□□□□□ -1.98
PRPF39-208ENST00000554785 GZF1Q9H116 711 aaPredicted RBP2.7□□□□□ -1.98
PRPF39-208ENST00000554785 EHD4Q9H223 541 aa2.7□□□□□ -1.98
PRPF39-208ENST00000554785 ADGRE2Q9UHX3 823 aa2.7□□□□□ -1.98
PRPF39-208ENST00000554785 GNEQ9Y223 722 aaKnown RBP2.7□□□□□ -1.98
PRPF39-208ENST00000554785 IVNS1ABPQ9Y6Y0 642 aa2.7□□□□□ -1.98
PRPF39-208ENST00000554785 WDR64B1ANS9 1081 aa2.69□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms