RNA–Protein interactions for RNA: ENST00000552800.2

TMEM116-216, Transcript of transmembrane protein 116, humanhuman

TSL 3

Gene TMEM116, Length 485 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM116-216ENST00000552800 MFSD10Q14728 455 aa11.77□□□□□ -0.53
TMEM116-216ENST00000552800 GORABQ5T7V8 394 aa11.77□□□□□ -0.53
TMEM116-216ENST00000552800 PRR5LQ6MZQ0 368 aa11.77□□□□□ -0.53
TMEM116-216ENST00000552800 ZNF589Q86UQ0 364 aaPredicted RBP11.77□□□□□ -0.53
TMEM116-216ENST00000552800 CCDC85AQ96PX6 553 aaPredicted RBP11.77□□□□□ -0.53
TMEM116-216ENST00000552800 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.77□□□□□ -0.533e-6■□□□□ 8.5
TMEM116-216ENST00000552800 LEMD3Q9Y2U8 911 aa11.77□□□□□ -0.53
TMEM116-216ENST00000552800 COL4A1P02462 1669 aa11.76□□□□□ -0.53
TMEM116-216ENST00000552800 GTF2E1P29083 439 aaPredicted RBP11.76□□□□□ -0.53
TMEM116-216ENST00000552800 PHKA1P46020 1223 aa11.76□□□□□ -0.53
TMEM116-216ENST00000552800 GRAPQ13588 217 aa11.76□□□□□ -0.53
TMEM116-216ENST00000552800 PPP1R15BQ5SWA1 713 aa11.76□□□□□ -0.53
TMEM116-216ENST00000552800 POTEAQ6S8J7 498 aa11.76□□□□□ -0.53
TMEM116-216ENST00000552800 DDX46Q7L014 1031 aaKnown RBP11.76□□□□□ -0.53
TMEM116-216ENST00000552800 RUFY3Q7L099 469 aa11.76□□□□□ -0.53
TMEM116-216ENST00000552800 ERICH6Q7L0X2 663 aa11.76□□□□□ -0.53
TMEM116-216ENST00000552800 SPATA5Q8NB90 893 aa11.76□□□□□ -0.53
TMEM116-216ENST00000552800 GRAPLQ8TC17 118 aaPredicted RBP11.76□□□□□ -0.53
TMEM116-216ENST00000552800 CELF1Q92879 486 aaKnown RBP11.76□□□□□ -0.53
TMEM116-216ENST00000552800 FAM84BQ96KN1 310 aaPredicted RBP11.76□□□□□ -0.53
TMEM116-216ENST00000552800 CAMKK2Q96RR4 588 aa11.76□□□□□ -0.53
TMEM116-216ENST00000552800 DNAJC2Q99543 621 aaKnown RBP11.76□□□□□ -0.53
TMEM116-216ENST00000552800 AGXT2Q9BYV1 514 aa11.76□□□□□ -0.53
TMEM116-216ENST00000552800 PODXL2Q9NZ53 605 aa11.76□□□□□ -0.53
TMEM116-216ENST00000552800 FOXP2O15409 715 aa11.75□□□□□ -0.53
TMEM116-216ENST00000552800 APBA3O96018 575 aa11.75□□□□□ -0.53
TMEM116-216ENST00000552800 HMGB1P09429 215 aaKnown RBP11.75□□□□□ -0.53
TMEM116-216ENST00000552800 HSPD1P10809 573 aaKnown RBP11.75□□□□□ -0.53
TMEM116-216ENST00000552800 SMIM5Q71RC9 77 aa11.75□□□□□ -0.53
TMEM116-216ENST00000552800 CNBD1Q8NA66 436 aa11.75□□□□□ -0.53
TMEM116-216ENST00000552800 OSBP2Q969R2 916 aa11.75□□□□□ -0.53
TMEM116-216ENST00000552800 TMX3Q96JJ7 454 aa11.75□□□□□ -0.53
TMEM116-216ENST00000552800 ZSCAN31Q96LW9 406 aaPredicted RBP11.75□□□□□ -0.53
TMEM116-216ENST00000552800 BRIP1Q9BX63 1249 aa11.75□□□□□ -0.53
TMEM116-216ENST00000552800 BCL11AQ9H165 835 aa11.75□□□□□ -0.53
TMEM116-216ENST00000552800 EP400Q96L91 3159 aa11.75□□□□□ -0.53
TMEM116-216ENST00000552800 EVCP57679 992 aa11.74□□□□□ -0.53
TMEM116-216ENST00000552800 FOXK1P85037 733 aa11.74□□□□□ -0.53
TMEM116-216ENST00000552800 FKBP4Q02790 459 aaKnown RBP eCLIP11.74□□□□□ -0.53
TMEM116-216ENST00000552800 RASGRF1Q13972 1273 aa11.74□□□□□ -0.53
TMEM116-216ENST00000552800 RAB3GAP1Q15042 981 aa11.74□□□□□ -0.53
TMEM116-216ENST00000552800 COL23A1Q86Y22 540 aaPredicted RBP11.74□□□□□ -0.53
TMEM116-216ENST00000552800 GNL3LQ9NVN8 582 aaKnown RBP11.74□□□□□ -0.53
TMEM116-216ENST00000552800 CTNNA3Q9UI47 895 aa11.74□□□□□ -0.53
TMEM116-216ENST00000552800 MAST3O60307 1309 aa11.74□□□□□ -0.53
TMEM116-216ENST00000552800 SALL1Q9NSC2 1324 aa11.74□□□□□ -0.53
TMEM116-216ENST00000552800 TAF1P21675 1872 aa11.74□□□□□ -0.53
TMEM116-216ENST00000552800 FAM177BA6PVY3 158 aa11.73□□□□□ -0.53
TMEM116-216ENST00000552800 CYP21A2P08686 494 aa11.73□□□□□ -0.53
TMEM116-216ENST00000552800 NUCB2P80303 420 aa11.73□□□□□ -0.53
TMEM116-216ENST00000552800 EXOSC10Q01780 885 aaKnown RBP11.73□□□□□ -0.53
TMEM116-216ENST00000552800 DDR1Q08345 913 aa11.73□□□□□ -0.53
TMEM116-216ENST00000552800 ANKRD1Q15327 319 aa11.73□□□□□ -0.53
TMEM116-216ENST00000552800 ADCK5Q3MIX3 580 aa11.73□□□□□ -0.53
TMEM116-216ENST00000552800 BICDL1Q6ZP65 573 aa11.73□□□□□ -0.53
TMEM116-216ENST00000552800 PNPLA7Q6ZV29 1317 aa11.73□□□□□ -0.53
TMEM116-216ENST00000552800 WDR19Q8NEZ3 1342 aa11.73□□□□□ -0.53
TMEM116-216ENST00000552800 SEC62Q99442 399 aaKnown RBP11.73□□□□□ -0.53
TMEM116-216ENST00000552800 SH2B1Q9NRF2 756 aaPredicted RBP11.73□□□□□ -0.53
TMEM116-216ENST00000552800 DENND2AQ9ULE3 1009 aa11.73□□□□□ -0.53
TMEM116-216ENST00000552800 LIMCH1Q9UPQ0 1083 aa11.73□□□□□ -0.53
TMEM116-216ENST00000552800 CYP46A1Q9Y6A2 500 aa11.73□□□□□ -0.53
TMEM116-216ENST00000552800 TNRC6CQ9HCJ0 1690 aaKnown RBP11.72□□□□□ -0.53
TMEM116-216ENST00000552800 BCAMP50895 628 aa11.72□□□□□ -0.53
TMEM116-216ENST00000552800 ST5P78524 1137 aa11.72□□□□□ -0.53
TMEM116-216ENST00000552800 MAP3K12Q12852 859 aa11.72□□□□□ -0.53
TMEM116-216ENST00000552800 ZNF827Q17R98 1081 aa11.72□□□□□ -0.53
TMEM116-216ENST00000552800 CAVIN4Q5BKX8 364 aa11.72□□□□□ -0.53
TMEM116-216ENST00000552800 PRPF40BQ6NWY9 871 aaKnown RBP11.72□□□□□ -0.53
TMEM116-216ENST00000552800 PLPP6Q8IY26 295 aa11.72□□□□□ -0.53
TMEM116-216ENST00000552800 RGS22Q8NE09 1264 aa11.72□□□□□ -0.53
TMEM116-216ENST00000552800 HELBQ8NG08 1087 aaPredicted RBP11.72□□□□□ -0.53
TMEM116-216ENST00000552800 PIH1D3Q9NQM4 214 aaKnown RBP11.72□□□□□ -0.53
TMEM116-216ENST00000552800 NDUFB9Q9Y6M9 179 aa11.72□□□□□ -0.53
TMEM116-216ENST00000552800 MYO5AQ9Y4I1 1855 aaKnown RBP11.72□□□□□ -0.53
TMEM116-216ENST00000552800 PATL2C9JE40 543 aaKnown RBP11.71□□□□□ -0.53
TMEM116-216ENST00000552800 HOXB3P14651 431 aaPredicted RBP11.71□□□□□ -0.53
TMEM116-216ENST00000552800 HOXB1P14653 301 aaPredicted RBP11.71□□□□□ -0.53
TMEM116-216ENST00000552800 PDE6AP16499 860 aa11.71□□□□□ -0.53
TMEM116-216ENST00000552800 GNAT2P19087 354 aa11.71□□□□□ -0.53
TMEM116-216ENST00000552800 RPS6KB1P23443 525 aa11.71□□□□□ -0.53
TMEM116-216ENST00000552800 NT5C2P49902 561 aa11.71□□□□□ -0.53
TMEM116-216ENST00000552800 NFKBIBQ15653 356 aa11.71□□□□□ -0.53
TMEM116-216ENST00000552800 SLC9C2Q5TAH2 1124 aa11.71□□□□□ -0.53
TMEM116-216ENST00000552800 SP8Q8IXZ3 490 aa11.71□□□□□ -0.53
TMEM116-216ENST00000552800 RBM17Q96I25 401 aaKnown RBP11.71□□□□□ -0.53
TMEM116-216ENST00000552800 NEK1Q96PY6 1258 aa11.71□□□□□ -0.53
TMEM116-216ENST00000552800 STRBPQ96SI9 672 aaKnown RBP11.71□□□□□ -0.53
TMEM116-216ENST00000552800 MTA3Q9BTC8 594 aa11.71□□□□□ -0.53
TMEM116-216ENST00000552800 PUS7LQ9H0K6 701 aaKnown RBP11.71□□□□□ -0.53
TMEM116-216ENST00000552800 LRRC37AA6NMS7 1700 aa11.71□□□□□ -0.54
TMEM116-216ENST00000552800 XDHP47989 1333 aa11.7□□□□□ -0.54
TMEM116-216ENST00000552800 LTBP1Q14766 1721 aa11.7□□□□□ -0.54
TMEM116-216ENST00000552800 KIAA1551Q9HCM1 1747 aa11.7□□□□□ -0.54
TMEM116-216ENST00000552800 M0R2C6 588 aa11.7□□□□□ -0.54
TMEM116-216ENST00000552800 PHF14O94880 888 aa11.7□□□□□ -0.54
TMEM116-216ENST00000552800 FGAP02671 866 aa11.7□□□□□ -0.54
TMEM116-216ENST00000552800 ATP2B4P23634 1241 aa11.7□□□□□ -0.54
TMEM116-216ENST00000552800 HIBADHP31937 336 aaKnown RBP11.7□□□□□ -0.54
TMEM116-216ENST00000552800 AK2P54819 239 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms