RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 NOP2P46087 812 aaKnown RBP5.61□□□□□ -1.51
LIMA1-214ENST00000552783 UBASH3AP57075 661 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 PDIA6Q15084 440 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 LRRFIP1Q32MZ4 808 aaKnown RBP5.61□□□□□ -1.51
LIMA1-214ENST00000552783 SPECC1Q5M775 1068 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 DHX32Q7L7V1 743 aaKnown RBP5.61□□□□□ -1.51
LIMA1-214ENST00000552783 KIFC2Q96AC6 838 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 MRPL44Q9H9J2 332 aaKnown RBP5.61□□□□□ -1.51
LIMA1-214ENST00000552783 TOPAZ1Q8N9V7 1692 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 FER1L4A9Z1Z3 1794 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 E7EWF7 191 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 HAND2P61296 217 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 GNG11P61952 73 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 MAP3K9P80192 1104 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 CFAP100Q494V2 611 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 MUM1L1Q5H9M0 696 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 RSRC2Q7L4I2 434 aaKnown RBP5.61□□□□□ -1.51
LIMA1-214ENST00000552783 COPS6Q7L5N1 327 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 KCNH5Q8NCM2 988 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 CLIC6Q96NY7 704 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 PNKPQ96T60 521 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 NAT10Q9H0A0 1025 aaKnown RBP5.61□□□□□ -1.51
LIMA1-214ENST00000552783 RTEL1Q9NZ71 1219 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 ADAMTS13Q76LX8 1427 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 PDIA4P13667 645 aaKnown RBP5.6□□□□□ -1.51
LIMA1-214ENST00000552783 ATF3P18847 181 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 NLRP12P59046 1061 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 PPP2R3AQ06190 1150 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 STK38Q15208 465 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 ZNF827Q17R98 1081 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 HSP90AB3PQ58FF7 597 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 TNNI3KQ59H18 835 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 CCDC158Q5M9N0 1113 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 STK11IPQ8N1F8 1099 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 XAGE3Q8WTP9 111 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 MED15Q96RN5 788 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 PDE11AQ9HCR9 933 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 STRN4Q9NRL3 753 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 PUF60Q9UHX1 559 aaKnown RBP5.6□□□□□ -1.51
LIMA1-214ENST00000552783 MRFAP1Q9Y605 127 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 FPGT-TNNI3KV9GXZ4 949 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 GOLIM4O00461 696 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 SPTLC2O15270 562 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 FOXP2O15409 715 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 DHX16O60231 1041 aaKnown RBP5.6□□□□□ -1.51
LIMA1-214ENST00000552783 PHACTR2O75167 634 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 SERPINC1P01008 464 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 TATP17735 454 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-214ENST00000552783 PTPN12Q05209 780 aaKnown RBP5.6□□□□□ -1.51
LIMA1-214ENST00000552783 MCM6Q14566 821 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 LONRF2Q1L5Z9 754 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 MCMDC2Q4G0Z9 681 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 IP6K1Q92551 441 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 PXDNQ92626 1479 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 A0A087WZG4 1122 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 ATP5JP18859 108 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 RXRAP19793 462 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 RFX5P48382 616 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-214ENST00000552783 TIMM10P62072 90 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 TPM4P67936 248 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 KRT32Q14532 448 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 SF3A1Q15459 793 aaKnown RBP5.6□□□□□ -1.51
LIMA1-214ENST00000552783 WASHC4Q2M389 1173 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 MYSM1Q5VVJ2 828 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 SHC4Q6S5L8 630 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-214ENST00000552783 KRT28Q7Z3Y7 464 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 SRLQ86TD4 932 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 VSTM4Q8IW00 320 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 TRMT44Q8IYL2 757 aaKnown RBP5.6□□□□□ -1.51
LIMA1-214ENST00000552783 TXLNBQ8N3L3 684 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 TC2NQ8N9U0 490 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 LINS1Q8NG48 757 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 SIRT1Q96EB6 747 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 ZNF396Q96N95 335 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-214ENST00000552783 BPIFA3Q9BQP9 254 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 LLPHQ9BRT6 129 aaKnown RBP5.6□□□□□ -1.51
LIMA1-214ENST00000552783 AGXT2Q9BYV1 514 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 ANKZF1Q9H8Y5 726 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 SEC31BQ9NQW1 1179 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 HPS5Q9UPZ3 1129 aa5.6□□□□□ -1.51
LIMA1-214ENST00000552783 U3KPZ7 1027 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-214ENST00000552783 A0A1W2PQ27 194 aa5.59□□□□□ -1.51
LIMA1-214ENST00000552783 A0A1W2PQ64 194 aa5.59□□□□□ -1.51
LIMA1-214ENST00000552783 A0A1W2PQD8 194 aa5.59□□□□□ -1.51
LIMA1-214ENST00000552783 HSPD1P10809 573 aaKnown RBP5.59□□□□□ -1.51
LIMA1-214ENST00000552783 KCNJ6P48051 423 aa5.59□□□□□ -1.51
LIMA1-214ENST00000552783 CABP4P57796 275 aa5.59□□□□□ -1.51
LIMA1-214ENST00000552783 CACNB1Q02641 598 aaPredicted RBP5.59□□□□□ -1.51
LIMA1-214ENST00000552783 FKBP4Q02790 459 aaKnown RBP eCLIP5.59□□□□□ -1.51
LIMA1-214ENST00000552783 FMR1Q06787 632 aaKnown RBP eCLIP5.59□□□□□ -1.51
LIMA1-214ENST00000552783 SKIDA1Q1XH10 827 aa5.59□□□□□ -1.51
LIMA1-214ENST00000552783 LONRF3Q496Y0 759 aa5.59□□□□□ -1.51
LIMA1-214ENST00000552783 AKAP4Q5JQC9 854 aa5.59□□□□□ -1.51
LIMA1-214ENST00000552783 PACS2Q86VP3 889 aa5.59□□□□□ -1.51
LIMA1-214ENST00000552783 METTL16Q86W50 562 aaKnown RBP5.59□□□□□ -1.51
LIMA1-214ENST00000552783 PDILTQ8N807 584 aa5.59□□□□□ -1.51
LIMA1-214ENST00000552783 RASSF4Q9H2L5 321 aa5.59□□□□□ -1.51
LIMA1-214ENST00000552783 ZBTB3Q9H5J0 574 aa5.59□□□□□ -1.51
LIMA1-214ENST00000552783 ARGLU1Q9NWB6 273 aaPredicted RBP5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 143.4 ms