RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 APPBP2Q92624 585 aa11.58□□□□□ -0.56
LIMA1-211ENST00000552338 IQSEC3Q9UPP2 1182 aaPredicted RBP11.58□□□□□ -0.56
LIMA1-211ENST00000552338 MAST3O60307 1309 aa11.58□□□□□ -0.56
LIMA1-211ENST00000552338 TIAM2Q8IVF5 1701 aa11.57□□□□□ -0.56
LIMA1-211ENST00000552338 SGSM2O43147 1006 aa11.57□□□□□ -0.56
LIMA1-211ENST00000552338 MAP4K4O95819 1239 aaPredicted RBP11.57□□□□□ -0.56
LIMA1-211ENST00000552338 LDHBP07195 334 aaKnown RBP11.57□□□□□ -0.56
LIMA1-211ENST00000552338 RPS12P25398 132 aaKnown RBP11.57□□□□□ -0.56
LIMA1-211ENST00000552338 PRDX5P30044 214 aa11.57□□□□□ -0.56
LIMA1-211ENST00000552338 PPP4CP60510 307 aa11.57□□□□□ -0.56
LIMA1-211ENST00000552338 CXCL9Q07325 125 aa11.57□□□□□ -0.56
LIMA1-211ENST00000552338 TNIP1Q15025 636 aa11.57□□□□□ -0.56
LIMA1-211ENST00000552338 RSBN1LQ6PCB5 846 aaPredicted RBP11.57□□□□□ -0.56
LIMA1-211ENST00000552338 HHIPL2Q6UWX4 724 aa11.57□□□□□ -0.56
LIMA1-211ENST00000552338 CERS3Q8IU89 383 aa11.57□□□□□ -0.56
LIMA1-211ENST00000552338 RUFY2Q8WXA3 655 aa11.57□□□□□ -0.56
LIMA1-211ENST00000552338 DPF2Q92785 391 aa11.57□□□□□ -0.56
LIMA1-211ENST00000552338 FSD1Q9BTV5 496 aa11.57□□□□□ -0.56
LIMA1-211ENST00000552338 BACH2Q9BYV9 841 aa11.57□□□□□ -0.56
LIMA1-211ENST00000552338 KCNQ5Q9NR82 932 aa11.57□□□□□ -0.56
LIMA1-211ENST00000552338 LRP2BPQ9P2M1 347 aa11.57□□□□□ -0.56
LIMA1-211ENST00000552338 FOCADQ5VW36 1801 aa11.57□□□□□ -0.56
LIMA1-211ENST00000552338 ECM29Q5VYK3 1845 aa11.57□□□□□ -0.56
LIMA1-211ENST00000552338 CDK5RAP2Q96SN8 1893 aa11.57□□□□□ -0.56
LIMA1-211ENST00000552338 GAKO14976 1311 aa11.57□□□□□ -0.56
LIMA1-211ENST00000552338 CAPN15O75808 1086 aa11.56□□□□□ -0.56
LIMA1-211ENST00000552338 LDHCP07864 332 aa11.56□□□□□ -0.56
LIMA1-211ENST00000552338 PDE6AP16499 860 aa11.56□□□□□ -0.56
LIMA1-211ENST00000552338 MCMDC2Q4G0Z9 681 aa11.56□□□□□ -0.56
LIMA1-211ENST00000552338 SLC9C2Q5TAH2 1124 aa11.56□□□□□ -0.56
LIMA1-211ENST00000552338 CIAPIN1Q6FI81 312 aa11.56□□□□□ -0.56
LIMA1-211ENST00000552338 SLF2Q8IX21 1173 aa11.56□□□□□ -0.56
LIMA1-211ENST00000552338 MTMR14Q8NCE2 650 aa11.56□□□□□ -0.56
LIMA1-211ENST00000552338 ESYT1Q9BSJ8 1104 aa11.56□□□□□ -0.56
LIMA1-211ENST00000552338 BCL11AQ9H165 835 aa11.56□□□□□ -0.56
LIMA1-211ENST00000552338 ABCF2Q9UG63 623 aa11.56□□□□□ -0.56
LIMA1-211ENST00000552338 WWC3Q9ULE0 1092 aa11.56□□□□□ -0.56
LIMA1-211ENST00000552338 RPAP1Q9BWH6 1393 aaPredicted RBP11.55□□□□□ -0.56
LIMA1-211ENST00000552338 GPR75-ASB3A0A0A6YYF3 556 aa11.55□□□□□ -0.56
LIMA1-211ENST00000552338 PSMD14O00487 310 aa11.55□□□□□ -0.56
LIMA1-211ENST00000552338 IDH1O75874 414 aaKnown RBP11.55□□□□□ -0.56
LIMA1-211ENST00000552338 GSTO1P78417 241 aa11.55□□□□□ -0.56
LIMA1-211ENST00000552338 MECOMQ03112 1051 aa11.55□□□□□ -0.56
LIMA1-211ENST00000552338 CHAF1AQ13111 956 aaPredicted RBP11.55□□□□□ -0.56
LIMA1-211ENST00000552338 GRIK5Q16478 980 aa11.55□□□□□ -0.56
LIMA1-211ENST00000552338 GPR162Q16538 588 aa11.55□□□□□ -0.56
LIMA1-211ENST00000552338 CASC1Q6TDU7 716 aa11.55□□□□□ -0.56
LIMA1-211ENST00000552338 OSBP2Q969R2 916 aa11.55□□□□□ -0.56
LIMA1-211ENST00000552338 ZNF532Q9HCE3 1301 aa11.55□□□□□ -0.56
LIMA1-211ENST00000552338 EIF6P56537 245 aaKnown RBP11.54□□□□□ -0.56
LIMA1-211ENST00000552338 NMIQ13287 307 aaPredicted RBP11.54□□□□□ -0.56
LIMA1-211ENST00000552338 NAA16Q6N069 864 aaPredicted RBP11.54□□□□□ -0.56
LIMA1-211ENST00000552338 PELP1Q8IZL8 1130 aaKnown RBP11.54□□□□□ -0.56
LIMA1-211ENST00000552338 GPC2Q8N158 579 aa11.54□□□□□ -0.56
LIMA1-211ENST00000552338 IL17RAQ96F46 866 aa11.54□□□□□ -0.56
LIMA1-211ENST00000552338 ZDHHC15Q96MV8 337 aa11.54□□□□□ -0.56
LIMA1-211ENST00000552338 RIOK1Q9BRS2 568 aaKnown RBP11.54□□□□□ -0.56
LIMA1-211ENST00000552338 PUS7LQ9H0K6 701 aaKnown RBP11.54□□□□□ -0.56
LIMA1-211ENST00000552338 DIAPH3Q9NSV4 1193 aa11.54□□□□□ -0.56
LIMA1-211ENST00000552338 SERPINA10Q9UK55 444 aa11.54□□□□□ -0.56
LIMA1-211ENST00000552338 SCN4AP35499 1836 aa11.53□□□□□ -0.56
LIMA1-211ENST00000552338 A0A0D9SFI3 127 aa11.53□□□□□ -0.56
LIMA1-211ENST00000552338 MFAP1P55081 439 aaKnown RBP11.53□□□□□ -0.56
LIMA1-211ENST00000552338 ZNF280AP59817 542 aaPredicted RBP11.53□□□□□ -0.56
LIMA1-211ENST00000552338 MAGEB6Q8N7X4 407 aa11.53□□□□□ -0.56
LIMA1-211ENST00000552338 ZBED3Q96IU2 234 aaPredicted RBP11.53□□□□□ -0.56
LIMA1-211ENST00000552338 FAM227BQ96M60 508 aa11.53□□□□□ -0.56
LIMA1-211ENST00000552338 STRBPQ96SI9 672 aaKnown RBP11.53□□□□□ -0.56
LIMA1-211ENST00000552338 DSCC1Q9BVC3 393 aa11.53□□□□□ -0.56
LIMA1-211ENST00000552338 IL25Q9H293 177 aa11.53□□□□□ -0.56
LIMA1-211ENST00000552338 RAI14Q9P0K7 980 aa11.53□□□□□ -0.56
LIMA1-211ENST00000552338 MROH7-TTC4A0A0A0MT08 1334 aa11.53□□□□□ -0.56
LIMA1-211ENST00000552338 ZMYM6O95789 1325 aa11.53□□□□□ -0.56
LIMA1-211ENST00000552338 REC8O95072 547 aa11.52□□□□□ -0.57
LIMA1-211ENST00000552338 CHGBP05060 677 aa11.52□□□□□ -0.57
LIMA1-211ENST00000552338 GNAT2P19087 354 aa11.52□□□□□ -0.57
LIMA1-211ENST00000552338 CYP7A1P22680 504 aa11.52□□□□□ -0.57
LIMA1-211ENST00000552338 DSG3P32926 999 aa11.52□□□□□ -0.57
LIMA1-211ENST00000552338 ALX1Q15699 326 aa11.52□□□□□ -0.57
LIMA1-211ENST00000552338 C9orf131Q5VYM1 1079 aa11.52□□□□□ -0.57
LIMA1-211ENST00000552338 GIMAP6Q6P9H5 292 aa11.52□□□□□ -0.57
LIMA1-211ENST00000552338 CWC27Q6UX04 472 aaKnown RBP11.52□□□□□ -0.57
LIMA1-211ENST00000552338 ADGRA1Q86SQ6 560 aa11.52□□□□□ -0.57
LIMA1-211ENST00000552338 DZIP1Q86YF9 867 aaKnown RBP11.52□□□□□ -0.57
LIMA1-211ENST00000552338 MAP4K1Q92918 833 aa11.52□□□□□ -0.57
LIMA1-211ENST00000552338 L3MBTL3Q96JM7 780 aaPredicted RBP11.52□□□□□ -0.57
LIMA1-211ENST00000552338 TTF2Q9UNY4 1162 aaKnown RBP11.52□□□□□ -0.57
LIMA1-211ENST00000552338 GOLGB1Q14789 3259 aaKnown RBP11.52□□□□□ -0.57
LIMA1-211ENST00000552338 CCDC171Q6TFL3 1326 aa11.52□□□□□ -0.57
LIMA1-211ENST00000552338 WDR90Q96KV7 1748 aa11.52□□□□□ -0.57
LIMA1-211ENST00000552338 RAD17O75943 681 aa11.51□□□□□ -0.57
LIMA1-211ENST00000552338 PLCG2P16885 1265 aa11.51□□□□□ -0.57
LIMA1-211ENST00000552338 RHBDL3P58872 404 aa11.51□□□□□ -0.57
LIMA1-211ENST00000552338 APOBEC3HQ6NTF7 200 aaKnown RBP11.51□□□□□ -0.57
LIMA1-211ENST00000552338 ZNF589Q86UQ0 364 aaPredicted RBP11.51□□□□□ -0.57
LIMA1-211ENST00000552338 KCNB2Q92953 911 aa11.51□□□□□ -0.57
LIMA1-211ENST00000552338 TEKT1Q969V4 418 aa11.51□□□□□ -0.57
LIMA1-211ENST00000552338 USP26Q9BXU7 913 aa11.51□□□□□ -0.57
LIMA1-211ENST00000552338 LSG1Q9H089 658 aaKnown RBP11.51□□□□□ -0.57
LIMA1-211ENST00000552338 RNF181Q9P0P0 153 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms