RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 J3QW42 95 aa5.66□□□□□ -1.5
LIMA1-208ENST00000551691 MICAL2O94851 1124 aa5.66□□□□□ -1.5
LIMA1-208ENST00000551691 H2AFB1P0C5Y9 115 aa5.66□□□□□ -1.5
LIMA1-208ENST00000551691 H2AFB2P0C5Z0 115 aa5.66□□□□□ -1.5
LIMA1-208ENST00000551691 EIF2AK2P19525 551 aaKnown RBP5.66□□□□□ -1.5
LIMA1-208ENST00000551691 IGFBP4P22692 258 aa5.66□□□□□ -1.5
LIMA1-208ENST00000551691 NOS3P29474 1203 aa5.66□□□□□ -1.5
LIMA1-208ENST00000551691 ARSDP51689 593 aa5.66□□□□□ -1.5
LIMA1-208ENST00000551691 ZNF211Q13398 564 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-208ENST00000551691 WFDC8Q8IUA0 241 aa5.66□□□□□ -1.5
LIMA1-208ENST00000551691 WFDC12Q8WWY7 111 aa5.66□□□□□ -1.5
LIMA1-208ENST00000551691 MEGF10Q96KG7 1140 aa5.66□□□□□ -1.5
LIMA1-208ENST00000551691 SSBP4Q9BWG4 385 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-208ENST00000551691 SMG9Q9H0W8 520 aaKnown RBP5.66□□□□□ -1.5
LIMA1-208ENST00000551691 EGFL7Q9UHF1 273 aa5.66□□□□□ -1.5
LIMA1-208ENST00000551691 CDK11AQ9UQ88 783 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-208ENST00000551691 MAP3K1Q13233 1512 aa5.65□□□□□ -1.5
LIMA1-208ENST00000551691 ALX3O95076 343 aa5.65□□□□□ -1.5
LIMA1-208ENST00000551691 EPB42P16452 691 aa5.65□□□□□ -1.5
LIMA1-208ENST00000551691 ZNF16P17020 682 aaPredicted RBP5.65□□□□□ -1.5
LIMA1-208ENST00000551691 R3HDM1Q15032 1099 aaKnown RBP5.65□□□□□ -1.5
LIMA1-208ENST00000551691 DNAJC14Q6Y2X3 702 aaPredicted RBP5.65□□□□□ -1.5
LIMA1-208ENST00000551691 RGL4Q8IZJ4 473 aa5.65□□□□□ -1.5
LIMA1-208ENST00000551691 VTI1AQ96AJ9 217 aa5.65□□□□□ -1.5
LIMA1-208ENST00000551691 PRIMPOLQ96LW4 560 aa5.65□□□□□ -1.5
LIMA1-208ENST00000551691 NSUN5Q96P11 429 aaKnown RBP5.65□□□□□ -1.5
LIMA1-208ENST00000551691 MKNK1Q9BUB5 465 aa5.65□□□□□ -1.5
LIMA1-208ENST00000551691 ANO2Q9NQ90 1003 aa5.65□□□□□ -1.5
LIMA1-208ENST00000551691 ZNF644Q9H582 1327 aaPredicted RBP5.65□□□□□ -1.51
LIMA1-208ENST00000551691 KDM5DQ9BY66 1539 aa5.64□□□□□ -1.51
LIMA1-208ENST00000551691 LOC105371045A0A1W2PR82 267 aa5.64□□□□□ -1.51
LIMA1-208ENST00000551691 HYAL3O43820 417 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-208ENST00000551691 DEAF1O75398 565 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-208ENST00000551691 TCF3P15923 654 aa5.64□□□□□ -1.51
LIMA1-208ENST00000551691 C1QTNF8P60827 252 aa5.64□□□□□ -1.51
LIMA1-208ENST00000551691 LRP8Q14114 963 aa5.64□□□□□ -1.51
LIMA1-208ENST00000551691 GDF6Q6KF10 455 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-208ENST00000551691 FBXO11Q86XK2 927 aa5.64□□□□□ -1.51
LIMA1-208ENST00000551691 CMTR1Q8N1G2 835 aaKnown RBP5.64□□□□□ -1.51
LIMA1-208ENST00000551691 CXXC1Q9P0U4 656 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-208ENST00000551691 LRFN2Q9ULH4 789 aa5.64□□□□□ -1.51
LIMA1-208ENST00000551691 RTCBQ9Y3I0 505 aaKnown RBP5.64□□□□□ -1.51
LIMA1-208ENST00000551691 MSH6P52701 1360 aa5.64□□□□□ -1.51
LIMA1-208ENST00000551691 TROQ12816 1431 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-208ENST00000551691 CFAP65Q6ZU64 1925 aaKnown RBP5.64□□□□□ -1.51
LIMA1-208ENST00000551691 PZPP20742 1482 aa5.64□□□□□ -1.51
LIMA1-208ENST00000551691 OPLAHO14841 1288 aa5.63□□□□□ -1.51
LIMA1-208ENST00000551691 PTCD1O75127 700 aaKnown RBP5.63□□□□□ -1.51
LIMA1-208ENST00000551691 MAP3K6O95382 1288 aa5.63□□□□□ -1.51
LIMA1-208ENST00000551691 GPLD1P80108 840 aa5.63□□□□□ -1.51
LIMA1-208ENST00000551691 BRINP3Q76B58 766 aa5.63□□□□□ -1.51
LIMA1-208ENST00000551691 TRPM4Q8TD43 1214 aa5.63□□□□□ -1.51
LIMA1-208ENST00000551691 EID1Q9Y6B2 187 aa5.63□□□□□ -1.51
LIMA1-208ENST00000551691 FGD6Q6ZV73 1430 aa5.63□□□□□ -1.51
LIMA1-208ENST00000551691 SCAF11Q99590 1463 aaKnown RBP5.63□□□□□ -1.51
LIMA1-208ENST00000551691 NLRP1Q9C000 1473 aa5.63□□□□□ -1.51
LIMA1-208ENST00000551691 PLXNC1O60486 1568 aa5.63□□□□□ -1.51
LIMA1-208ENST00000551691 LRP5O75197 1615 aa5.63□□□□□ -1.51
LIMA1-208ENST00000551691 WEE1P30291 646 aa5.62□□□□□ -1.51
LIMA1-208ENST00000551691 SCNN1AP37088 669 aa5.62□□□□□ -1.51
LIMA1-208ENST00000551691 ITGAEP38570 1179 aa5.62□□□□□ -1.51
LIMA1-208ENST00000551691 C11orf91Q3C1V1 193 aa5.62□□□□□ -1.51
LIMA1-208ENST00000551691 TREML1Q86YW5 311 aa5.62□□□□□ -1.51
LIMA1-208ENST00000551691 TMC1Q8TDI8 760 aa5.62□□□□□ -1.51
LIMA1-208ENST00000551691 PLD4Q96BZ4 506 aa5.62□□□□□ -1.51
LIMA1-208ENST00000551691 EFCC1Q9HA90 598 aa5.62□□□□□ -1.51
LIMA1-208ENST00000551691 DCTN4Q9UJW0 460 aa5.62□□□□□ -1.51
LIMA1-208ENST00000551691 TRPC5Q9UL62 973 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-208ENST00000551691 NCOA2Q15596 1464 aa5.62□□□□□ -1.51
LIMA1-208ENST00000551691 ATP7AQ04656 1500 aa5.62□□□□□ -1.51
LIMA1-208ENST00000551691 ICMTO60725 284 aa5.61□□□□□ -1.51
LIMA1-208ENST00000551691 MMP20O60882 483 aa5.61□□□□□ -1.51
LIMA1-208ENST00000551691 XYLBO75191 536 aa5.61□□□□□ -1.51
LIMA1-208ENST00000551691 SF3B2Q13435 895 aaKnown RBP5.61□□□□□ -1.51
LIMA1-208ENST00000551691 FKBP5Q13451 457 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-208ENST00000551691 AAMPQ13685 434 aa5.61□□□□□ -1.51
LIMA1-208ENST00000551691 LRRC9Q6ZRR7 1453 aa5.61□□□□□ -1.51
LIMA1-208ENST00000551691 DHX29Q7Z478 1369 aaKnown RBP5.61□□□□□ -1.51
LIMA1-208ENST00000551691 AGGF1Q8N302 714 aaeCLIP5.61□□□□□ -1.51
LIMA1-208ENST00000551691 GTF3C2Q8WUA4 911 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-208ENST00000551691 SYCP2Q9BX26 1530 aa5.61□□□□□ -1.51
LIMA1-208ENST00000551691 FRRS1LQ9P0K9 344 aa5.61□□□□□ -1.51
LIMA1-208ENST00000551691 SHPRHQ149N8 1683 aa5.6□□□□□ -1.51
LIMA1-208ENST00000551691 PRDM15P57071 1507 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-208ENST00000551691 ATF3P18847 181 aa5.6□□□□□ -1.51
LIMA1-208ENST00000551691 CDC25BP30305 580 aa5.6□□□□□ -1.51
LIMA1-208ENST00000551691 EAPPQ56P03 285 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-208ENST00000551691 FAM26DQ5JW98 314 aa5.6□□□□□ -1.51
LIMA1-208ENST00000551691 COX20Q5RI15 118 aa5.6□□□□□ -1.51
LIMA1-208ENST00000551691 NPAS4Q8IUM7 802 aa5.6□□□□□ -1.51
LIMA1-208ENST00000551691 DTWD1Q8N5C7 304 aa5.6□□□□□ -1.51
LIMA1-208ENST00000551691 LRRC59Q96AG4 307 aaKnown RBP5.6□□□□□ -1.51
LIMA1-208ENST00000551691 SAP130Q9H0E3 1048 aa5.6□□□□□ -1.51
LIMA1-208ENST00000551691 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.6□□□□□ -1.519e-7■■■■■ 70.5
LIMA1-208ENST00000551691 TLR7Q9NYK1 1049 aaKnown RBP5.6□□□□□ -1.51
LIMA1-208ENST00000551691 KIAA1522Q9P206 1035 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-208ENST00000551691 TRIM33Q9UPN9 1127 aa5.6□□□□□ -1.51
LIMA1-208ENST00000551691 DIP2AQ14689 1571 aa5.59□□□□□ -1.51
LIMA1-208ENST00000551691 BCL9LQ86UU0 1499 aa5.59□□□□□ -1.51
LIMA1-208ENST00000551691 BLMP54132 1417 aaPredicted RBP5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms