RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 CCDC183Q5T5S1 534 aa10.76□□□□□ -0.69
PTCH1-220ENST00000550136 ACBD5Q5T8D3 534 aaPredicted RBP10.76□□□□□ -0.69
PTCH1-220ENST00000550136 MYSM1Q5VVJ2 828 aa10.76□□□□□ -0.69
PTCH1-220ENST00000550136 RCSD1Q6JBY9 416 aa10.76□□□□□ -0.69
PTCH1-220ENST00000550136 MTFR1LQ9H019 292 aa10.76□□□□□ -0.69
PTCH1-220ENST00000550136 PICK1Q9NRD5 415 aa10.76□□□□□ -0.69
PTCH1-220ENST00000550136 G3BP2Q9UN86 482 aaKnown RBP10.76□□□□□ -0.69
PTCH1-220ENST00000550136 FRMD4BQ9Y2L6 1034 aa10.76□□□□□ -0.69
PTCH1-220ENST00000550136 CHRNA2Q15822 529 aa10.76□□□□□ -0.69
PTCH1-220ENST00000550136 LHX8Q68G74 356 aa10.76□□□□□ -0.69
PTCH1-220ENST00000550136 ISM2Q6H9L7 571 aa10.76□□□□□ -0.69
PTCH1-220ENST00000550136 CXorf38Q8TB03 319 aa10.76□□□□□ -0.69
PTCH1-220ENST00000550136 PCDHB15Q9Y5E8 787 aa10.76□□□□□ -0.69
PTCH1-220ENST00000550136 SHANK3Q9BYB0 1731 aa10.76□□□□□ -0.69
PTCH1-220ENST00000550136 SBF2Q86WG5 1849 aa10.76□□□□□ -0.69
PTCH1-220ENST00000550136 EVA1CP58658 441 aa10.75□□□□□ -0.69
PTCH1-220ENST00000550136 SLFN5Q08AF3 891 aa10.75□□□□□ -0.69
PTCH1-220ENST00000550136 SFSWAPQ12872 951 aaKnown RBP10.75□□□□□ -0.69
PTCH1-220ENST00000550136 DBN1Q16643 649 aa10.75□□□□□ -0.69
PTCH1-220ENST00000550136 CCDC93Q567U6 631 aa10.75□□□□□ -0.69
PTCH1-220ENST00000550136 CCDC158Q5M9N0 1113 aa10.75□□□□□ -0.69
PTCH1-220ENST00000550136 RBM17Q96I25 401 aaKnown RBP10.75□□□□□ -0.69
PTCH1-220ENST00000550136 TRIM7Q9C029 511 aa10.75□□□□□ -0.69
PTCH1-220ENST00000550136 STK32BQ9NY57 414 aa10.75□□□□□ -0.69
PTCH1-220ENST00000550136 UTP6Q9NYH9 597 aaKnown RBP10.75□□□□□ -0.69
PTCH1-220ENST00000550136 COG6Q9Y2V7 657 aa10.75□□□□□ -0.69
PTCH1-220ENST00000550136 IPO5O00410 1097 aaKnown RBP10.75□□□□□ -0.69
PTCH1-220ENST00000550136 BCAR3O75815 825 aa10.75□□□□□ -0.69
PTCH1-220ENST00000550136 SEC31AO94979 1220 aaKnown RBP10.75□□□□□ -0.69
PTCH1-220ENST00000550136 ZBED6P86452 979 aa10.75□□□□□ -0.69
PTCH1-220ENST00000550136 HSP90AB2PQ58FF8 381 aa10.75□□□□□ -0.69
PTCH1-220ENST00000550136 CC2D1AQ6P1N0 951 aaPredicted RBP10.75□□□□□ -0.69
PTCH1-220ENST00000550136 NBPF15Q8N660 670 aa10.75□□□□□ -0.69
PTCH1-220ENST00000550136 B4GALNT2Q8NHY0 566 aa10.75□□□□□ -0.69
PTCH1-220ENST00000550136 DCBLD2Q96PD2 775 aa10.75□□□□□ -0.69
PTCH1-220ENST00000550136 ATP7BP35670 1465 aa10.74□□□□□ -0.69
PTCH1-220ENST00000550136 H3BQF6 201 aa10.74□□□□□ -0.69
PTCH1-220ENST00000550136 ZNF24P17028 368 aa10.74□□□□□ -0.69
PTCH1-220ENST00000550136 ZKSCAN2Q63HK3 967 aa10.74□□□□□ -0.69
PTCH1-220ENST00000550136 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.74□□□□□ -0.69
PTCH1-220ENST00000550136 PROM2Q8N271 834 aa10.74□□□□□ -0.69
PTCH1-220ENST00000550136 KCND1Q9NSA2 647 aa10.74□□□□□ -0.69
PTCH1-220ENST00000550136 TMOD4Q9NZQ9 345 aa10.74□□□□□ -0.69
PTCH1-220ENST00000550136 MYO6Q9UM54 1294 aa10.74□□□□□ -0.69
PTCH1-220ENST00000550136 KDM2AQ9Y2K7 1162 aa10.74□□□□□ -0.69
PTCH1-220ENST00000550136 EXOC5O00471 708 aa10.74□□□□□ -0.69
PTCH1-220ENST00000550136 EPB41L2O43491 1005 aaKnown RBP10.74□□□□□ -0.69
PTCH1-220ENST00000550136 RANBP1P43487 201 aa10.74□□□□□ -0.69
PTCH1-220ENST00000550136 IFT88Q13099 833 aa10.74□□□□□ -0.69
PTCH1-220ENST00000550136 TSNAXIP1Q2TAA8 658 aa10.74□□□□□ -0.69
PTCH1-220ENST00000550136 TAX1BP1Q86VP1 789 aa10.74□□□□□ -0.69
PTCH1-220ENST00000550136 MAB21L3Q8N8X9 362 aa10.74□□□□□ -0.69
PTCH1-220ENST00000550136 OR8K1Q8NGG5 319 aa10.74□□□□□ -0.69
PTCH1-220ENST00000550136 FAM81AQ8TBF8 368 aa10.74□□□□□ -0.69
PTCH1-220ENST00000550136 SNRNP27Q8WVK2 155 aaKnown RBP10.74□□□□□ -0.69
PTCH1-220ENST00000550136 UBXN4Q92575 508 aa10.74□□□□□ -0.69
PTCH1-220ENST00000550136 STK31Q9BXU1 1019 aa10.74□□□□□ -0.69
PTCH1-220ENST00000550136 TSGA10Q9BZW7 698 aa10.74□□□□□ -0.69
PTCH1-220ENST00000550136 TMEM165Q9HC07 324 aa10.74□□□□□ -0.69
PTCH1-220ENST00000550136 LMO7Q8WWI1 1683 aa10.74□□□□□ -0.69
PTCH1-220ENST00000550136 TULP4Q9NRJ4 1543 aa10.73□□□□□ -0.69
PTCH1-220ENST00000550136 CCDC181Q5TID7 509 aa10.73□□□□□ -0.69
PTCH1-220ENST00000550136 LARP1Q6PKG0 1096 aaKnown RBP10.73□□□□□ -0.69
PTCH1-220ENST00000550136 PRAM1Q96QH2 718 aa10.73□□□□□ -0.69
PTCH1-220ENST00000550136 C14orf93Q9H972 538 aaKnown RBP10.73□□□□□ -0.69
PTCH1-220ENST00000550136 CD248Q9HCU0 757 aa10.73□□□□□ -0.69
PTCH1-220ENST00000550136 BATF3Q9NR55 127 aa10.73□□□□□ -0.69
PTCH1-220ENST00000550136 RGL1Q9NZL6 768 aa10.73□□□□□ -0.69
PTCH1-220ENST00000550136 VPS18Q9P253 973 aa10.73□□□□□ -0.69
PTCH1-220ENST00000550136 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.73□□□□□ -0.69
PTCH1-220ENST00000550136 USP47Q96K76 1375 aa10.73□□□□□ -0.69
PTCH1-220ENST00000550136 PEX19P40855 299 aa10.73□□□□□ -0.69
PTCH1-220ENST00000550136 SLC15A2Q16348 729 aa10.73□□□□□ -0.69
PTCH1-220ENST00000550136 GPR162Q16538 588 aa10.73□□□□□ -0.69
PTCH1-220ENST00000550136 AKNAD1Q5T1N1 836 aa10.73□□□□□ -0.69
PTCH1-220ENST00000550136 SFMBT2Q5VUG0 894 aa10.73□□□□□ -0.69
PTCH1-220ENST00000550136 TLDC1Q6P9B6 456 aa10.73□□□□□ -0.69
PTCH1-220ENST00000550136 SDCCAG8Q86SQ7 713 aaPredicted RBP10.73□□□□□ -0.69
PTCH1-220ENST00000550136 AMOTL1Q8IY63 956 aa10.73□□□□□ -0.69
PTCH1-220ENST00000550136 SMCR8Q8TEV9 937 aaPredicted RBP10.73□□□□□ -0.69
PTCH1-220ENST00000550136 FUCA2Q9BTY2 467 aa10.73□□□□□ -0.69
PTCH1-220ENST00000550136 FUT8Q9BYC5 575 aa10.73□□□□□ -0.69
PTCH1-220ENST00000550136 ACBD3Q9H3P7 528 aa10.73□□□□□ -0.69
PTCH1-220ENST00000550136 BCL9O00512 1426 aa10.72□□□□□ -0.69
PTCH1-220ENST00000550136 AHCYL1O43865 530 aa10.72□□□□□ -0.69
PTCH1-220ENST00000550136 GNAI1P63096 354 aa10.72□□□□□ -0.69
PTCH1-220ENST00000550136 DEUP1Q05D60 604 aa10.72□□□□□ -0.69
PTCH1-220ENST00000550136 USP4Q13107 963 aa10.72□□□□□ -0.69
PTCH1-220ENST00000550136 MFN1Q8IWA4 741 aa10.72□□□□□ -0.69
PTCH1-220ENST00000550136 SPDL1Q96EA4 605 aa10.72□□□□□ -0.69
PTCH1-220ENST00000550136 MMADHCQ9H3L0 296 aaPredicted RBP10.72□□□□□ -0.69
PTCH1-220ENST00000550136 PRR36Q9H6K5 1346 aa10.72□□□□□ -0.69
PTCH1-220ENST00000550136 NEMFO60524 1076 aa10.72□□□□□ -0.69
PTCH1-220ENST00000550136 SKAP2O75563 359 aaPredicted RBP10.72□□□□□ -0.69
PTCH1-220ENST00000550136 BRD1O95696 1058 aa10.72□□□□□ -0.69
PTCH1-220ENST00000550136 MX1P20591 662 aa10.72□□□□□ -0.69
PTCH1-220ENST00000550136 ZC3H6P61129 1189 aaKnown RBP10.72□□□□□ -0.69
PTCH1-220ENST00000550136 PUS10Q3MIT2 529 aaKnown RBP10.72□□□□□ -0.69
PTCH1-220ENST00000550136 PANK1Q8TE04 598 aa10.72□□□□□ -0.69
PTCH1-220ENST00000550136 XAGE2Q96GT9 111 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms