RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 DNA2P51530 1060 aa18.65■□□□□ 0.58
CUX1-213ENST00000549414 DIP2CQ9Y2E4 1556 aa18.65■□□□□ 0.58
CUX1-213ENST00000549414 PLIN2Q99541 437 aa18.64■□□□□ 0.58
CUX1-213ENST00000549414 NYXQ9GZU5 481 aa18.64■□□□□ 0.58
CUX1-213ENST00000549414 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.64■□□□□ 0.58
CUX1-213ENST00000549414 V9GYY5 206 aaPredicted RBP18.64■□□□□ 0.58
CUX1-213ENST00000549414 LARGE1O95461 756 aa18.64■□□□□ 0.57
CUX1-213ENST00000549414 IGKV5-2P06315 115 aa18.64■□□□□ 0.57
CUX1-213ENST00000549414 KCNQ4P56696 695 aa18.64■□□□□ 0.57
CUX1-213ENST00000549414 PTPN12Q05209 780 aaKnown RBP18.64■□□□□ 0.57
CUX1-213ENST00000549414 POLA2Q14181 598 aa18.64■□□□□ 0.57
CUX1-213ENST00000549414 RRAGBQ5VZM2 374 aa18.64■□□□□ 0.57
CUX1-213ENST00000549414 CCNL1Q9UK58 526 aaPredicted RBP18.64■□□□□ 0.57
CUX1-213ENST00000549414 KIF2AO00139 706 aaPredicted RBP18.64■□□□□ 0.57
CUX1-213ENST00000549414 MTIF2P46199 727 aaKnown RBP18.64■□□□□ 0.57
CUX1-213ENST00000549414 TMEM266Q2M3C6 531 aa18.64■□□□□ 0.57
CUX1-213ENST00000549414 CCDC181Q5TID7 509 aa18.64■□□□□ 0.57
CUX1-213ENST00000549414 CEP135Q66GS9 1140 aa18.64■□□□□ 0.57
CUX1-213ENST00000549414 KIDINS220Q9ULH0 1771 aa18.64■□□□□ 0.57
CUX1-213ENST00000549414 LAMC1P11047 1609 aa18.64■□□□□ 0.57
CUX1-213ENST00000549414 CYP21A2P08686 494 aa18.64■□□□□ 0.57
CUX1-213ENST00000549414 LLPHQ9BRT6 129 aaKnown RBP18.64■□□□□ 0.57
CUX1-213ENST00000549414 CAMSAP1Q5T5Y3 1602 aa18.64■□□□□ 0.57
CUX1-213ENST00000549414 FGAP02671 866 aa18.63■□□□□ 0.57
CUX1-213ENST00000549414 LDHBP07195 334 aaKnown RBP18.63■□□□□ 0.57
CUX1-213ENST00000549414 SLFNL1Q499Z3 407 aa18.63■□□□□ 0.57
CUX1-213ENST00000549414 TTC6Q86TZ1 520 aa18.63■□□□□ 0.57
CUX1-213ENST00000549414 CMTR1Q8N1G2 835 aaKnown RBP18.63■□□□□ 0.57
CUX1-213ENST00000549414 DSCC1Q9BVC3 393 aa18.63■□□□□ 0.57
CUX1-213ENST00000549414 SEPT11Q9NVA2 429 aaKnown RBP18.63■□□□□ 0.57
CUX1-213ENST00000549414 SAP30BPQ9UHR5 308 aaKnown RBP18.63■□□□□ 0.57
CUX1-213ENST00000549414 NEXMIFQ5QGS0 1516 aa18.63■□□□□ 0.57
CUX1-213ENST00000549414 RGS12O14924 1447 aa18.63■□□□□ 0.57
CUX1-213ENST00000549414 MCM7P33993 719 aa18.63■□□□□ 0.57
CUX1-213ENST00000549414 ANO1Q5XXA6 986 aa18.63■□□□□ 0.57
CUX1-213ENST00000549414 ZBTB38Q8NAP3 1195 aaPredicted RBP18.63■□□□□ 0.57
CUX1-213ENST00000549414 ADD1P35611 737 aaKnown RBP18.63■□□□□ 0.57
CUX1-213ENST00000549414 KANK3Q6NY19 840 aa18.63■□□□□ 0.57
CUX1-213ENST00000549414 AATFQ9NY61 560 aaKnown RBP eCLIP18.63■□□□□ 0.573e-6■■■□□ 18.2
CUX1-213ENST00000549414 RAB34Q9BZG1 259 aa18.63■□□□□ 0.57
CUX1-213ENST00000549414 KCNJ14Q9UNX9 436 aa18.63■□□□□ 0.57
CUX1-213ENST00000549414 PHKA1P46020 1223 aa18.62■□□□□ 0.57
CUX1-213ENST00000549414 GSTO1P78417 241 aa18.62■□□□□ 0.57
CUX1-213ENST00000549414 DIS3L2Q8IYB7 885 aaKnown RBP18.62■□□□□ 0.57
CUX1-213ENST00000549414 V9GY48 417 aaPredicted RBP18.62■□□□□ 0.57
CUX1-213ENST00000549414 KIF5CO60282 957 aa18.62■□□□□ 0.57
CUX1-213ENST00000549414 BCAMP50895 628 aa18.62■□□□□ 0.57
CUX1-213ENST00000549414 NAPAP54920 295 aa18.62■□□□□ 0.57
CUX1-213ENST00000549414 GNG11P61952 73 aa18.62■□□□□ 0.57
CUX1-213ENST00000549414 ZNF174Q15697 407 aa18.62■□□□□ 0.57
CUX1-213ENST00000549414 CBX8Q9HC52 389 aa18.62■□□□□ 0.57
CUX1-213ENST00000549414 HIBADHP31937 336 aaKnown RBP18.62■□□□□ 0.57
CUX1-213ENST00000549414 STAT6P42226 847 aa18.61■□□□□ 0.57
CUX1-213ENST00000549414 AXDND1Q5T1B0 1012 aaPredicted RBP18.61■□□□□ 0.57
CUX1-213ENST00000549414 CCDC12Q8WUD4 166 aaPredicted RBP18.61■□□□□ 0.57
CUX1-213ENST00000549414 TMEM87BQ96K49 555 aa18.61■□□□□ 0.57
CUX1-213ENST00000549414 FEZ1Q99689 392 aa18.61■□□□□ 0.57
CUX1-213ENST00000549414 CLSTN2Q9H4D0 955 aa18.61■□□□□ 0.57
CUX1-213ENST00000549414 PCCAP05165 728 aaPredicted RBP18.61■□□□□ 0.57
CUX1-213ENST00000549414 GYG1P46976 350 aa18.61■□□□□ 0.57
CUX1-213ENST00000549414 FAM182BQ5T319 152 aa18.61■□□□□ 0.57
CUX1-213ENST00000549414 KRT40Q6A162 431 aa18.61■□□□□ 0.57
CUX1-213ENST00000549414 TRIM47Q96LD4 638 aa18.61■□□□□ 0.57
CUX1-213ENST00000549414 WDR17Q8IZU2 1322 aa18.61■□□□□ 0.57
CUX1-213ENST00000549414 FAM193AP78312 1265 aa18.61■□□□□ 0.57
CUX1-213ENST00000549414 FKBP15Q5T1M5 1219 aa18.61■□□□□ 0.57
CUX1-213ENST00000549414 CACNA2D4Q7Z3S7 1137 aa18.61■□□□□ 0.57
CUX1-213ENST00000549414 ZNF804AQ7Z570 1209 aa18.61■□□□□ 0.57
CUX1-213ENST00000549414 CALML4Q96GE6 196 aa18.61■□□□□ 0.57
CUX1-213ENST00000549414 USP28Q96RU2 1077 aa18.61■□□□□ 0.57
CUX1-213ENST00000549414 CPS1P31327 1500 aa18.61■□□□□ 0.57
CUX1-213ENST00000549414 PDE6AP16499 860 aa18.61■□□□□ 0.57
CUX1-213ENST00000549414 CCDC178Q5BJE1 867 aa18.61■□□□□ 0.57
CUX1-213ENST00000549414 CARD10Q9BWT7 1032 aa18.61■□□□□ 0.57
CUX1-213ENST00000549414 SPDYE4A6NLX3 237 aa18.6■□□□□ 0.57
CUX1-213ENST00000549414 MYCNP04198 464 aaPredicted RBP18.6■□□□□ 0.57
CUX1-213ENST00000549414 CASQ1P31415 396 aa18.6■□□□□ 0.57
CUX1-213ENST00000549414 RBM26Q5T8P6 1007 aaKnown RBP18.6■□□□□ 0.57
CUX1-213ENST00000549414 KRI1Q8N9T8 703 aaKnown RBP18.6■□□□□ 0.57
CUX1-213ENST00000549414 VWA3AA6NCI4 1184 aa18.6■□□□□ 0.57
CUX1-213ENST00000549414 ZC3H12CQ9C0D7 883 aaKnown RBP18.6■□□□□ 0.57
CUX1-213ENST00000549414 USP21Q9UK80 565 aa18.6■□□□□ 0.57
CUX1-213ENST00000549414 DENND2AQ9ULE3 1009 aa18.6■□□□□ 0.57
CUX1-213ENST00000549414 HLA-DOAP06340 250 aa18.6■□□□□ 0.57
CUX1-213ENST00000549414 KRT2P35908 639 aa18.6■□□□□ 0.57
CUX1-213ENST00000549414 HS1BP3Q53T59 392 aa18.6■□□□□ 0.57
CUX1-213ENST00000549414 CNBD1Q8NA66 436 aa18.6■□□□□ 0.57
CUX1-213ENST00000549414 NR1I2O75469 434 aa18.59■□□□□ 0.57
CUX1-213ENST00000549414 TRAPPC3LQ5T215 181 aa18.59■□□□□ 0.57
CUX1-213ENST00000549414 CCDC150Q8NCX0 1101 aa18.59■□□□□ 0.57
CUX1-213ENST00000549414 DNAI1Q9UI46 699 aa18.59■□□□□ 0.57
CUX1-213ENST00000549414 MED14O60244 1454 aa18.59■□□□□ 0.57
CUX1-213ENST00000549414 SYCP1Q15431 976 aa18.59■□□□□ 0.57
CUX1-213ENST00000549414 SDR42E1Q8WUS8 393 aa18.59■□□□□ 0.57
CUX1-213ENST00000549414 LUC7LQ9NQ29 371 aaKnown RBP18.59■□□□□ 0.57
CUX1-213ENST00000549414 RTL9Q8NET4 1388 aa18.59■□□□□ 0.57
CUX1-213ENST00000549414 ERBB4Q15303 1308 aa18.59■□□□□ 0.57
CUX1-213ENST00000549414 MAP3K15Q6ZN16 1313 aa18.59■□□□□ 0.57
CUX1-213ENST00000549414 CUL4AQ13619 759 aa18.59■□□□□ 0.57
CUX1-213ENST00000549414 ZNF397Q8NF99 534 aaPredicted RBP18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms