RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 ABTB2Q8N961 1025 aa7.24□□□□□ -1.25
VPS29-205ENST00000548539 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.24□□□□□ -1.25
VPS29-205ENST00000548539 LOC100289279A0A1B0GTE1 492 aa7.23□□□□□ -1.25
VPS29-205ENST00000548539 PAPLNO95428 1278 aa7.23□□□□□ -1.25
VPS29-205ENST00000548539 BSNDQ8WZ55 320 aa7.23□□□□□ -1.25
VPS29-205ENST00000548539 NUDT16Q96DE0 195 aaKnown RBP7.23□□□□□ -1.25
VPS29-205ENST00000548539 HHIPQ96QV1 700 aa7.23□□□□□ -1.25
VPS29-205ENST00000548539 LRRC4CQ9HCJ2 640 aa7.23□□□□□ -1.25
VPS29-205ENST00000548539 DLGAP3O95886 979 aa7.22□□□□□ -1.25
VPS29-205ENST00000548539 MFAP1P55081 439 aaKnown RBP7.22□□□□□ -1.25
VPS29-205ENST00000548539 PKN1Q16512 942 aa7.22□□□□□ -1.25
VPS29-205ENST00000548539 C1orf127Q8N9H9 656 aa7.22□□□□□ -1.25
VPS29-205ENST00000548539 TMEM102Q8N9M5 508 aaPredicted RBP7.22□□□□□ -1.25
VPS29-205ENST00000548539 C2CD4AQ8NCU7 369 aaPredicted RBP7.22□□□□□ -1.25
VPS29-205ENST00000548539 EZH1Q92800 747 aaPredicted RBP7.22□□□□□ -1.25
VPS29-205ENST00000548539 ZC3H7BQ9UGR2 993 aaKnown RBP7.22□□□□□ -1.25
VPS29-205ENST00000548539 FARP2O94887 1054 aaPredicted RBP7.21□□□□□ -1.26
VPS29-205ENST00000548539 RPLP1P05386 114 aaKnown RBP7.21□□□□□ -1.26
VPS29-205ENST00000548539 CYP27A1Q02318 531 aa7.21□□□□□ -1.26
VPS29-205ENST00000548539 SOX4Q06945 474 aaPredicted RBP7.21□□□□□ -1.26
VPS29-205ENST00000548539 CCER1Q8TC90 406 aaPredicted RBP7.21□□□□□ -1.26
VPS29-205ENST00000548539 CXXC1Q9P0U4 656 aaPredicted RBP7.21□□□□□ -1.26
VPS29-205ENST00000548539 SLC5A6Q9Y289 635 aa7.21□□□□□ -1.26
VPS29-205ENST00000548539 SERPINB4P48594 390 aa7.2□□□□□ -1.26
VPS29-205ENST00000548539 PLCL1Q15111 1095 aa7.2□□□□□ -1.26
VPS29-205ENST00000548539 VN1R5Q7Z5H4 357 aa7.2□□□□□ -1.26
VPS29-205ENST00000548539 TXNDC2Q86VQ3 553 aa7.2□□□□□ -1.26
VPS29-205ENST00000548539 PMEPA1Q969W9 287 aa7.2□□□□□ -1.26
VPS29-205ENST00000548539 NXPE3Q969Y0 559 aa7.2□□□□□ -1.26
VPS29-205ENST00000548539 GNEQ9Y223 722 aaKnown RBP7.2□□□□□ -1.26
VPS29-205ENST00000548539 XKR5Q6UX68 686 aa7.19□□□□□ -1.26
VPS29-205ENST00000548539 SPOCD1Q6ZMY3 1216 aa7.19□□□□□ -1.26
VPS29-205ENST00000548539 TTC16Q8NEE8 873 aa7.19□□□□□ -1.26
VPS29-205ENST00000548539 GATA6Q92908 595 aa7.19□□□□□ -1.26
VPS29-205ENST00000548539 OSMRQ99650 979 aa7.19□□□□□ -1.26
VPS29-205ENST00000548539 SOX17Q9H6I2 414 aaPredicted RBP7.19□□□□□ -1.26
VPS29-205ENST00000548539 PCSK2P16519 638 aa7.18□□□□□ -1.26
VPS29-205ENST00000548539 MAP7Q14244 749 aa7.18□□□□□ -1.26
VPS29-205ENST00000548539 ZNF792Q3KQV3 632 aa7.18□□□□□ -1.26
VPS29-205ENST00000548539 SND1Q7KZF4 910 aaKnown RBP eCLIP7.18□□□□□ -1.264e-6■■■□□ 14.7
VPS29-205ENST00000548539 ZNF765Q7L2R6 523 aa7.18□□□□□ -1.26
VPS29-205ENST00000548539 BCL7CQ8WUZ0 217 aaPredicted RBP7.18□□□□□ -1.26
VPS29-205ENST00000548539 MTMR7Q9Y216 660 aa7.18□□□□□ -1.26
VPS29-205ENST00000548539 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.18□□□□□ -1.26
VPS29-205ENST00000548539 CARMIL2Q6F5E8 1435 aa7.18□□□□□ -1.26
VPS29-205ENST00000548539 EIF4EBP3O60516 100 aaPredicted RBP7.17□□□□□ -1.26
VPS29-205ENST00000548539 NFICP08651 508 aa7.17□□□□□ -1.26
VPS29-205ENST00000548539 GSTM4Q03013 218 aa7.17□□□□□ -1.26
VPS29-205ENST00000548539 ATCAYQ86WG3 371 aa7.17□□□□□ -1.26
VPS29-205ENST00000548539 KSR1Q8IVT5 923 aa7.17□□□□□ -1.26
VPS29-205ENST00000548539 ABL1P00519 1130 aa7.16□□□□□ -1.26
VPS29-205ENST00000548539 RAB6AP20340 208 aa7.16□□□□□ -1.26
VPS29-205ENST00000548539 CCDC27Q2M243 656 aa7.16□□□□□ -1.26
VPS29-205ENST00000548539 NPM2Q86SE8 214 aaKnown RBP7.16□□□□□ -1.26
VPS29-205ENST00000548539 STK11IPQ8N1F8 1099 aa7.16□□□□□ -1.26
VPS29-205ENST00000548539 ASAP3Q8TDY4 903 aa7.16□□□□□ -1.26
VPS29-205ENST00000548539 ZKSCAN3Q9BRR0 538 aa7.16□□□□□ -1.26
VPS29-205ENST00000548539 KRTAP4-11Q9BYQ6 195 aa7.16□□□□□ -1.26
VPS29-205ENST00000548539 ANO2Q9NQ90 1003 aa7.16□□□□□ -1.26
VPS29-205ENST00000548539 ESRRAP11474 423 aaPredicted RBP7.15□□□□□ -1.26
VPS29-205ENST00000548539 ADH5P11766 374 aa7.15□□□□□ -1.26
VPS29-205ENST00000548539 C8orf34Q49A92 452 aa7.15□□□□□ -1.26
VPS29-205ENST00000548539 ZNF574Q6ZN55 896 aaPredicted RBP7.15□□□□□ -1.26
VPS29-205ENST00000548539 ATG4DQ86TL0 474 aaPredicted RBP7.15□□□□□ -1.26
VPS29-205ENST00000548539 RGS22Q8NE09 1264 aa7.15□□□□□ -1.26
VPS29-205ENST00000548539 EDEM1Q92611 657 aa7.15□□□□□ -1.26
VPS29-205ENST00000548539 SEPT3Q9UH03 358 aa7.15□□□□□ -1.26
VPS29-205ENST00000548539 ACTL7BQ9Y614 415 aa7.15□□□□□ -1.26
VPS29-205ENST00000548539 DNM1Q05193 864 aaKnown RBP7.14□□□□□ -1.27
VPS29-205ENST00000548539 ZNF211Q13398 564 aaPredicted RBP7.14□□□□□ -1.27
VPS29-205ENST00000548539 SPRED2Q7Z698 418 aa7.14□□□□□ -1.27
VPS29-205ENST00000548539 SLC38A3Q99624 504 aa7.14□□□□□ -1.27
VPS29-205ENST00000548539 CHRDQ9H2X0 955 aa7.14□□□□□ -1.27
VPS29-205ENST00000548539 SEMA6CQ9H3T2 930 aa7.14□□□□□ -1.27
VPS29-205ENST00000548539 SOWAHDA6NJG2 315 aa7.13□□□□□ -1.27
VPS29-205ENST00000548539 EDN3P14138 238 aa7.13□□□□□ -1.27
VPS29-205ENST00000548539 DYMQ7RTS9 669 aa7.13□□□□□ -1.27
VPS29-205ENST00000548539 FAM168AQ92567 244 aa7.13□□□□□ -1.27
VPS29-205ENST00000548539 GGNBP2Q9H3C7 697 aa7.13□□□□□ -1.27
VPS29-205ENST00000548539 BIN2Q9UBW5 565 aaPredicted RBP7.13□□□□□ -1.27
VPS29-205ENST00000548539 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.12□□□□□ -1.27
VPS29-205ENST00000548539 A6NHS1 94 aa7.12□□□□□ -1.27
VPS29-205ENST00000548539 TMEM40Q8WWA1 233 aa7.12□□□□□ -1.27
VPS29-205ENST00000548539 MISP3Q96FF7 219 aa7.12□□□□□ -1.27
VPS29-205ENST00000548539 RC3H2Q9HBD1 1191 aaKnown RBP7.12□□□□□ -1.27
VPS29-205ENST00000548539 RAD18Q9NS91 495 aa7.12□□□□□ -1.27
VPS29-205ENST00000548539 H3BRB1 525 aa7.11□□□□□ -1.27
VPS29-205ENST00000548539 BNIP3Q12983 259 aa7.11□□□□□ -1.27
VPS29-205ENST00000548539 MTMR3Q13615 1198 aa7.11□□□□□ -1.27
VPS29-205ENST00000548539 HP1BP3Q5SSJ5 553 aaPredicted RBP7.11□□□□□ -1.27
VPS29-205ENST00000548539 OGFOD3Q6PK18 319 aa7.11□□□□□ -1.27
VPS29-205ENST00000548539 GLIS3Q8NEA6 775 aa7.11□□□□□ -1.27
VPS29-205ENST00000548539 GTF3C2Q8WUA4 911 aaPredicted RBP7.11□□□□□ -1.27
VPS29-205ENST00000548539 BHLHE41Q9C0J9 482 aaPredicted RBP7.11□□□□□ -1.27
VPS29-205ENST00000548539 TUT1Q9H6E5 874 aaKnown RBP7.11□□□□□ -1.27
VPS29-205ENST00000548539 ACSS3Q9H6R3 686 aa7.11□□□□□ -1.27
VPS29-205ENST00000548539 FAM105AQ9NUU6 356 aa7.11□□□□□ -1.27
VPS29-205ENST00000548539 EREGO14944 169 aa7.1□□□□□ -1.27
VPS29-205ENST00000548539 PDGFAP04085 211 aa7.1□□□□□ -1.27
VPS29-205ENST00000548539 MAOBP27338 520 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms