RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 FAM193AP78312 1265 aa16.96■□□□□ 0.31
HOXC11-202ENST00000546378 RBM6P78332 1123 aaKnown RBP16.96■□□□□ 0.31
HOXC11-202ENST00000546378 FAM160A1Q05DH4 1040 aa16.96■□□□□ 0.31
HOXC11-202ENST00000546378 SRRTQ9BXP5 876 aaKnown RBP16.96■□□□□ 0.31
HOXC11-202ENST00000546378 E7EWF7 191 aa16.96■□□□□ 0.31
HOXC11-202ENST00000546378 PPP1R13BQ96KQ4 1090 aa16.96■□□□□ 0.31
HOXC11-202ENST00000546378 SPTLC2O15270 562 aa16.95■□□□□ 0.3
HOXC11-202ENST00000546378 ZNF202O95125 648 aa16.95■□□□□ 0.3
HOXC11-202ENST00000546378 CTDNEP1O95476 244 aa16.95■□□□□ 0.3
HOXC11-202ENST00000546378 MTX1Q13505 466 aa16.95■□□□□ 0.3
HOXC11-202ENST00000546378 FAM182BQ5T319 152 aa16.95■□□□□ 0.3
HOXC11-202ENST00000546378 ARMCX5Q6P1M9 558 aa16.95■□□□□ 0.3
HOXC11-202ENST00000546378 DHX32Q7L7V1 743 aaKnown RBP16.95■□□□□ 0.3
HOXC11-202ENST00000546378 C10orf67Q8IYJ2 551 aa16.95■□□□□ 0.3
HOXC11-202ENST00000546378 SYNE4Q8N205 404 aa16.95■□□□□ 0.3
HOXC11-202ENST00000546378 DDX21Q9NR30 783 aaKnown RBP eCLIP16.95■□□□□ 0.3
HOXC11-202ENST00000546378 PAG1Q9NWQ8 432 aa16.95■□□□□ 0.3
HOXC11-202ENST00000546378 IBSPP21815 317 aaPredicted RBP16.95■□□□□ 0.3
HOXC11-202ENST00000546378 AFMP43652 599 aa16.95■□□□□ 0.3
HOXC11-202ENST00000546378 CCZ1BP86790 482 aa16.95■□□□□ 0.3
HOXC11-202ENST00000546378 CCZ1P86791 482 aaPredicted RBP16.95■□□□□ 0.3
HOXC11-202ENST00000546378 GCKRQ14397 625 aa16.95■□□□□ 0.3
HOXC11-202ENST00000546378 E4F1Q66K89 784 aaPredicted RBP16.95■□□□□ 0.3
HOXC11-202ENST00000546378 KIF20AO95235 890 aa16.95■□□□□ 0.3
HOXC11-202ENST00000546378 TOP1P11387 765 aaKnown RBP16.95■□□□□ 0.3
HOXC11-202ENST00000546378 ADORA1P30542 326 aa16.95■□□□□ 0.3
HOXC11-202ENST00000546378 TERF2Q15554 542 aa16.95■□□□□ 0.3
HOXC11-202ENST00000546378 NEURL1BA8MQ27 555 aa16.94■□□□□ 0.3
HOXC11-202ENST00000546378 CTIFO43310 598 aaKnown RBP16.94■□□□□ 0.3
HOXC11-202ENST00000546378 RHOXF2BP0C7M4 288 aa16.94■□□□□ 0.3
HOXC11-202ENST00000546378 RHOXF2Q9BQY4 288 aa16.94■□□□□ 0.3
HOXC11-202ENST00000546378 TM6SF1Q9BZW5 370 aa16.94■□□□□ 0.3
HOXC11-202ENST00000546378 MAPK8IP1Q9UQF2 711 aa16.94■□□□□ 0.3
HOXC11-202ENST00000546378 COL5A2P05997 1499 aaPredicted RBP16.94■□□□□ 0.3
HOXC11-202ENST00000546378 PRC1O43663 620 aa16.94■□□□□ 0.3
HOXC11-202ENST00000546378 SLFN14P0C7P3 912 aa16.94■□□□□ 0.3
HOXC11-202ENST00000546378 ERCC3P19447 782 aa16.94■□□□□ 0.3
HOXC11-202ENST00000546378 ST5P78524 1137 aa16.94■□□□□ 0.3
HOXC11-202ENST00000546378 FANCCQ00597 558 aa16.94■□□□□ 0.3
HOXC11-202ENST00000546378 FAM98CQ17RN3 349 aaKnown RBP16.94■□□□□ 0.3
HOXC11-202ENST00000546378 TTC39AQ5SRH9 613 aa16.94■□□□□ 0.3
HOXC11-202ENST00000546378 FEZ1Q99689 392 aa16.94■□□□□ 0.3
HOXC11-202ENST00000546378 FANCLQ9NW38 375 aa16.94■□□□□ 0.3
HOXC11-202ENST00000546378 EVCP57679 992 aa16.94■□□□□ 0.3
HOXC11-202ENST00000546378 MEX3CQ5U5Q3 659 aaKnown RBP16.94■□□□□ 0.3
HOXC11-202ENST00000546378 UTP14CQ5TAP6 766 aaKnown RBP16.93■□□□□ 0.3
HOXC11-202ENST00000546378 TTLL7Q6ZT98 887 aa16.93■□□□□ 0.3
HOXC11-202ENST00000546378 U3KPZ7 1027 aaPredicted RBP16.93■□□□□ 0.3
HOXC11-202ENST00000546378 COL15A1P39059 1388 aa16.93■□□□□ 0.3
HOXC11-202ENST00000546378 HOXB7P09629 217 aa16.93■□□□□ 0.3
HOXC11-202ENST00000546378 PDIA3P30101 505 aaKnown RBP16.93■□□□□ 0.3
HOXC11-202ENST00000546378 SYKP43405 635 aa16.93■□□□□ 0.3
HOXC11-202ENST00000546378 KRT32Q14532 448 aa16.93■□□□□ 0.3
HOXC11-202ENST00000546378 DDB1Q16531 1140 aa16.93■□□□□ 0.3
HOXC11-202ENST00000546378 ZNF446Q9NWS9 450 aa16.93■□□□□ 0.3
HOXC11-202ENST00000546378 KCNJ14Q9UNX9 436 aa16.93■□□□□ 0.3
HOXC11-202ENST00000546378 AOX1Q06278 1338 aa16.93■□□□□ 0.3
HOXC11-202ENST00000546378 ALS2Q96Q42 1657 aa16.92■□□□□ 0.3
HOXC11-202ENST00000546378 SMYD4Q8IYR2 804 aaPredicted RBP16.92■□□□□ 0.3
HOXC11-202ENST00000546378 CCDC12Q8WUD4 166 aaPredicted RBP16.92■□□□□ 0.3
HOXC11-202ENST00000546378 PIGBQ92521 554 aa16.92■□□□□ 0.3
HOXC11-202ENST00000546378 XIRP1Q702N8 1843 aaKnown RBP16.92■□□□□ 0.3
HOXC11-202ENST00000546378 KIF28PB7ZC32 967 aa16.92■□□□□ 0.3
HOXC11-202ENST00000546378 HSPD1P10809 573 aaKnown RBP16.92■□□□□ 0.3
HOXC11-202ENST00000546378 DNAJC10Q8IXB1 793 aa16.92■□□□□ 0.3
HOXC11-202ENST00000546378 SENP2Q9HC62 589 aa16.92■□□□□ 0.3
HOXC11-202ENST00000546378 M0R2C6 588 aa16.92■□□□□ 0.3
HOXC11-202ENST00000546378 PFKFB1P16118 471 aa16.92■□□□□ 0.3
HOXC11-202ENST00000546378 MTF1Q14872 753 aa16.92■□□□□ 0.3
HOXC11-202ENST00000546378 CNNM3Q8NE01 707 aa16.92■□□□□ 0.3
HOXC11-202ENST00000546378 FAM89AQ96GI7 184 aa16.92■□□□□ 0.3
HOXC11-202ENST00000546378 ZSCAN16Q9H4T2 348 aaPredicted RBP16.92■□□□□ 0.3
HOXC11-202ENST00000546378 A0A0U1RQJ8 604 aa16.91■□□□□ 0.3
HOXC11-202ENST00000546378 PTPN12Q05209 780 aaKnown RBP16.91■□□□□ 0.3
HOXC11-202ENST00000546378 ATRIPQ8WXE1 791 aa16.91■□□□□ 0.3
HOXC11-202ENST00000546378 KIAA1468Q9P260 1216 aa16.91■□□□□ 0.3
HOXC11-202ENST00000546378 HNRNPH2P55795 449 aaKnown RBP16.91■□□□□ 0.3
HOXC11-202ENST00000546378 MRPS25P82663 173 aaKnown RBP16.91■□□□□ 0.3
HOXC11-202ENST00000546378 TRDNQ13061 729 aa16.91■□□□□ 0.3
HOXC11-202ENST00000546378 ERO1AQ96HE7 468 aa16.91■□□□□ 0.3
HOXC11-202ENST00000546378 SLC26A6Q9BXS9 759 aa16.91■□□□□ 0.3
HOXC11-202ENST00000546378 B4E1Z4 1266 aa16.9■□□□□ 0.3
HOXC11-202ENST00000546378 KCTD19Q17RG1 926 aaPredicted RBP16.9■□□□□ 0.3
HOXC11-202ENST00000546378 OLFM4Q6UX06 510 aa16.9■□□□□ 0.3
HOXC11-202ENST00000546378 KRBA2Q6ZNG9 492 aa16.9■□□□□ 0.3
HOXC11-202ENST00000546378 ALG1Q9BT22 464 aa16.9■□□□□ 0.3
HOXC11-202ENST00000546378 SUGCTQ9HAC7 445 aa16.9■□□□□ 0.3
HOXC11-202ENST00000546378 A0A1B0GUL7 405 aa16.9■□□□□ 0.3
HOXC11-202ENST00000546378 KCNQ4P56696 695 aa16.9■□□□□ 0.3
HOXC11-202ENST00000546378 PDIA6Q15084 440 aa16.9■□□□□ 0.3
HOXC11-202ENST00000546378 OSBP2Q969R2 916 aa16.9■□□□□ 0.3
HOXC11-202ENST00000546378 TIGD1Q96MW7 591 aa16.9■□□□□ 0.3
HOXC11-202ENST00000546378 DNA2P51530 1060 aa16.9■□□□□ 0.3
HOXC11-202ENST00000546378 CCDC102AQ96A19 550 aa16.9■□□□□ 0.3
HOXC11-202ENST00000546378 CCDC66A2RUB6 948 aa16.89■□□□□ 0.29
HOXC11-202ENST00000546378 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.89■□□□□ 0.29
HOXC11-202ENST00000546378 ERVV-2B6SEH9 535 aa16.89■□□□□ 0.29
HOXC11-202ENST00000546378 NBPF11Q86T75 865 aa16.89■□□□□ 0.29
HOXC11-202ENST00000546378 IRX5P78411 483 aaPredicted RBP16.88■□□□□ 0.29
HOXC11-202ENST00000546378 WDR24Q96S15 920 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms