RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 KRT85P78386 507 aa9.91□□□□□ -0.82
CLIP1-218ENST00000545889 UPF3BQ9BZI7 483 aaKnown RBP9.91□□□□□ -0.82
CLIP1-218ENST00000545889 TSPY3P0CV98 308 aa9.91□□□□□ -0.82
CLIP1-218ENST00000545889 TSPY8P0CW00 308 aa9.91□□□□□ -0.82
CLIP1-218ENST00000545889 NIM1KQ8IY84 436 aa9.91□□□□□ -0.82
CLIP1-218ENST00000545889 ANKRD2Q9GZV1 360 aa9.91□□□□□ -0.82
CLIP1-218ENST00000545889 LRRC24Q50LG9 513 aa9.9□□□□□ -0.82
CLIP1-218ENST00000545889 EPHA10Q5JZY3 1008 aa9.9□□□□□ -0.82
CLIP1-218ENST00000545889 ZBTB38Q8NAP3 1195 aaPredicted RBP9.9□□□□□ -0.82
CLIP1-218ENST00000545889 SSH3Q8TE77 659 aa9.9□□□□□ -0.82
CLIP1-218ENST00000545889 TNPO1Q92973 898 aaKnown RBP9.9□□□□□ -0.82
CLIP1-218ENST00000545889 ZSCAN31Q96LW9 406 aaPredicted RBP9.9□□□□□ -0.82
CLIP1-218ENST00000545889 PUS3Q9BZE2 481 aaKnown RBP9.9□□□□□ -0.82
CLIP1-218ENST00000545889 KDM6AO15550 1401 aaPredicted RBP9.9□□□□□ -0.82
CLIP1-218ENST00000545889 CETN2P41208 172 aa9.9□□□□□ -0.82
CLIP1-218ENST00000545889 NCBP1Q09161 790 aaKnown RBP9.9□□□□□ -0.82
CLIP1-218ENST00000545889 ITPK1Q13572 414 aa9.9□□□□□ -0.82
CLIP1-218ENST00000545889 MFSD6Q6ZSS7 791 aa9.9□□□□□ -0.82
CLIP1-218ENST00000545889 NLRP10Q86W26 655 aa9.9□□□□□ -0.82
CLIP1-218ENST00000545889 GREM2Q9H772 168 aa9.9□□□□□ -0.82
CLIP1-218ENST00000545889 GPHNQ9NQX3 736 aaPredicted RBP9.9□□□□□ -0.82
CLIP1-218ENST00000545889 A0A1B0GUL7 405 aa9.9□□□□□ -0.83
CLIP1-218ENST00000545889 NKX1-1Q15270 411 aaPredicted RBP9.9□□□□□ -0.83
CLIP1-218ENST00000545889 DPP8Q6V1X1 898 aaPredicted RBP9.9□□□□□ -0.83
CLIP1-218ENST00000545889 TRIM5Q9C035 493 aa9.9□□□□□ -0.83
CLIP1-218ENST00000545889 GOLGA8AA7E2F4 631 aa9.89□□□□□ -0.83
CLIP1-218ENST00000545889 GOLGA8BA8MQT2 603 aa9.89□□□□□ -0.83
CLIP1-218ENST00000545889 SERPINC1P01008 464 aa9.89□□□□□ -0.83
CLIP1-218ENST00000545889 GTF2A1P52655 376 aaPredicted RBP9.89□□□□□ -0.83
CLIP1-218ENST00000545889 HOOK2Q96ED9 719 aa9.89□□□□□ -0.83
CLIP1-218ENST00000545889 UFL1O94874 794 aa9.89□□□□□ -0.83
CLIP1-218ENST00000545889 FAM193AP78312 1265 aa9.89□□□□□ -0.83
CLIP1-218ENST00000545889 PTF1AQ7RTS3 328 aa9.89□□□□□ -0.83
CLIP1-218ENST00000545889 MNS1Q8NEH6 495 aa9.89□□□□□ -0.83
CLIP1-218ENST00000545889 SUPT20HQ8NEM7 779 aa9.89□□□□□ -0.83
CLIP1-218ENST00000545889 ZKSCAN5Q9Y2L8 839 aa9.89□□□□□ -0.83
CLIP1-218ENST00000545889 PCCAP05165 728 aaPredicted RBP9.89□□□□□ -0.83
CLIP1-218ENST00000545889 TAF12Q16514 161 aa9.89□□□□□ -0.83
CLIP1-218ENST00000545889 EDC3Q96F86 508 aaKnown RBP9.89□□□□□ -0.83
CLIP1-218ENST00000545889 CTSWP56202 376 aa9.89□□□□□ -0.83
CLIP1-218ENST00000545889 SUSD4Q5VX71 490 aa9.89□□□□□ -0.83
CLIP1-218ENST00000545889 PRPF40BQ6NWY9 871 aaKnown RBP9.89□□□□□ -0.83
CLIP1-218ENST00000545889 PPFIBP1Q86W92 1011 aa9.89□□□□□ -0.83
CLIP1-218ENST00000545889 TCHPQ9BT92 498 aa9.89□□□□□ -0.83
CLIP1-218ENST00000545889 SEC31BQ9NQW1 1179 aa9.89□□□□□ -0.83
CLIP1-218ENST00000545889 ADCY9O60503 1353 aa9.89□□□□□ -0.83
CLIP1-218ENST00000545889 IDEP14735 1019 aa9.88□□□□□ -0.83
CLIP1-218ENST00000545889 EN1Q05925 392 aaPredicted RBP9.88□□□□□ -0.83
CLIP1-218ENST00000545889 TXNRD1Q16881 649 aa9.88□□□□□ -0.83
CLIP1-218ENST00000545889 TNNI3KQ59H18 835 aa9.88□□□□□ -0.83
CLIP1-218ENST00000545889 EVI5LQ96CN4 794 aa9.88□□□□□ -0.83
CLIP1-218ENST00000545889 TMOD4Q9NZQ9 345 aa9.88□□□□□ -0.83
CLIP1-218ENST00000545889 CFAP45Q9UL16 551 aa9.88□□□□□ -0.83
CLIP1-218ENST00000545889 FPGT-TNNI3KV9GXZ4 949 aa9.88□□□□□ -0.83
CLIP1-218ENST00000545889 LDHBP07195 334 aaKnown RBP9.88□□□□□ -0.83
CLIP1-218ENST00000545889 LRSAM1Q6UWE0 723 aa9.88□□□□□ -0.83
CLIP1-218ENST00000545889 KIF22Q14807 665 aa9.88□□□□□ -0.83
CLIP1-218ENST00000545889 TMEM67Q5HYA8 995 aa9.88□□□□□ -0.83
CLIP1-218ENST00000545889 EAF2Q96CJ1 260 aaPredicted RBP9.88□□□□□ -0.83
CLIP1-218ENST00000545889 LARP6Q9BRS8 491 aaKnown RBP9.88□□□□□ -0.83
CLIP1-218ENST00000545889 CLGNO14967 610 aa9.87□□□□□ -0.83
CLIP1-218ENST00000545889 PRPF40AO75400 957 aaKnown RBP9.87□□□□□ -0.83
CLIP1-218ENST00000545889 CASTP20810 708 aaKnown RBP9.87□□□□□ -0.83
CLIP1-218ENST00000545889 HAND2P61296 217 aa9.87□□□□□ -0.83
CLIP1-218ENST00000545889 CETN1Q12798 172 aa9.87□□□□□ -0.83
CLIP1-218ENST00000545889 PDIA6Q15084 440 aa9.87□□□□□ -0.83
CLIP1-218ENST00000545889 ERFEQ4G0M1 354 aa9.87□□□□□ -0.83
CLIP1-218ENST00000545889 SMCR8Q8TEV9 937 aaPredicted RBP9.87□□□□□ -0.83
CLIP1-218ENST00000545889 AKAP12Q02952 1782 aa9.87□□□□□ -0.83
CLIP1-218ENST00000545889 RPS6KA4O75676 772 aa9.87□□□□□ -0.83
CLIP1-218ENST00000545889 EIF5P55010 431 aaKnown RBP9.87□□□□□ -0.83
CLIP1-218ENST00000545889 ARHGEF6Q15052 776 aa9.87□□□□□ -0.83
CLIP1-218ENST00000545889 ARHGEF1Q92888 912 aaKnown RBP9.87□□□□□ -0.83
CLIP1-218ENST00000545889 NFAT5O94916 1531 aa9.87□□□□□ -0.83
CLIP1-218ENST00000545889 HMGB1P09429 215 aaKnown RBP9.87□□□□□ -0.83
CLIP1-218ENST00000545889 IRX5P78411 483 aaPredicted RBP9.87□□□□□ -0.83
CLIP1-218ENST00000545889 TXLNBQ8N3L3 684 aa9.87□□□□□ -0.83
CLIP1-218ENST00000545889 FNBP4Q8N3X1 1017 aaPredicted RBP9.87□□□□□ -0.83
CLIP1-218ENST00000545889 BICD1Q96G01 975 aa9.87□□□□□ -0.83
CLIP1-218ENST00000545889 SH2D4AQ9H788 454 aa9.87□□□□□ -0.83
CLIP1-218ENST00000545889 TCP11L1Q9NUJ3 509 aa9.87□□□□□ -0.83
CLIP1-218ENST00000545889 MBD3O95983 291 aa9.87□□□□□ -0.83
CLIP1-218ENST00000545889 CCDC178Q5BJE1 867 aa9.87□□□□□ -0.83
CLIP1-218ENST00000545889 LINC00116Q8NCU8 138 aa9.87□□□□□ -0.83
CLIP1-218ENST00000545889 PPIP5K2O43314 1243 aa9.86□□□□□ -0.83
CLIP1-218ENST00000545889 GTF2F1P35269 517 aaKnown RBP eCLIP9.86□□□□□ -0.83
CLIP1-218ENST00000545889 EP400NLQ6ZTU2 488 aa9.86□□□□□ -0.83
CLIP1-218ENST00000545889 STXBP4Q6ZWJ1 553 aa9.86□□□□□ -0.83
CLIP1-218ENST00000545889 TTC6Q86TZ1 520 aa9.86□□□□□ -0.83
CLIP1-218ENST00000545889 SMARCC2Q8TAQ2 1214 aa9.86□□□□□ -0.83
CLIP1-218ENST00000545889 C8orf76Q96K31 380 aa9.86□□□□□ -0.83
CLIP1-218ENST00000545889 TSPYL1Q9H0U9 437 aa9.86□□□□□ -0.83
CLIP1-218ENST00000545889 GGA1Q9UJY5 639 aa9.86□□□□□ -0.83
CLIP1-218ENST00000545889 SYCP3Q8IZU3 236 aa9.86□□□□□ -0.83
CLIP1-218ENST00000545889 WDR33Q9C0J8 1336 aaKnown RBP9.86□□□□□ -0.83
CLIP1-218ENST00000545889 NWD1Q149M9 1564 aa9.86□□□□□ -0.83
CLIP1-218ENST00000545889 MICU3Q86XE3 530 aa9.86□□□□□ -0.83
CLIP1-218ENST00000545889 XAGE2Q96GT9 111 aa9.86□□□□□ -0.83
CLIP1-218ENST00000545889 MED1Q15648 1581 aaPredicted RBP9.86□□□□□ -0.83
CLIP1-218ENST00000545889 SNAP23O00161 211 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms