RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 HLFQ16534 295 aa18.38■□□□□ 0.53
LDLR-204ENST00000545707 SLC9C2Q5TAH2 1124 aa18.38■□□□□ 0.53
LDLR-204ENST00000545707 CYB5R4Q7L1T6 521 aa18.38■□□□□ 0.53
LDLR-204ENST00000545707 NAT10Q9H0A0 1025 aaKnown RBP18.38■□□□□ 0.53
LDLR-204ENST00000545707 PRDM4Q9UKN5 801 aa18.38■□□□□ 0.53
LDLR-204ENST00000545707 NWD2Q9ULI1 1742 aa18.37■□□□□ 0.53
LDLR-204ENST00000545707 DHX16O60231 1041 aaKnown RBP18.37■□□□□ 0.53
LDLR-204ENST00000545707 SMC2O95347 1197 aa18.37■□□□□ 0.53
LDLR-204ENST00000545707 IL2RBP14784 551 aa18.37■□□□□ 0.53
LDLR-204ENST00000545707 KIF23Q02241 960 aaPredicted RBP18.37■□□□□ 0.53
LDLR-204ENST00000545707 ZRSR1Q15695 479 aaKnown RBP18.37■□□□□ 0.53
LDLR-204ENST00000545707 LRRFIP1Q32MZ4 808 aaKnown RBP18.37■□□□□ 0.53
LDLR-204ENST00000545707 LDHAL6AQ6ZMR3 332 aa18.37■□□□□ 0.53
LDLR-204ENST00000545707 TBC1D10CQ8IV04 446 aa18.37■□□□□ 0.53
LDLR-204ENST00000545707 KCNG4Q8TDN1 519 aa18.37■□□□□ 0.53
LDLR-204ENST00000545707 PHKBQ93100 1093 aa18.37■□□□□ 0.53
LDLR-204ENST00000545707 XPO4Q9C0E2 1151 aaKnown RBP18.37■□□□□ 0.53
LDLR-204ENST00000545707 GREM2Q9H772 168 aa18.37■□□□□ 0.53
LDLR-204ENST00000545707 POLR3EQ9NVU0 708 aa18.37■□□□□ 0.53
LDLR-204ENST00000545707 IFNKQ9P0W0 207 aa18.37■□□□□ 0.53
LDLR-204ENST00000545707 LAMB4A4D0S4 1761 aa18.37■□□□□ 0.53
LDLR-204ENST00000545707 CPDO75976 1380 aa18.37■□□□□ 0.53
LDLR-204ENST00000545707 UBE2Q2LH0YL09 131 aa18.37■□□□□ 0.53
LDLR-204ENST00000545707 IDH1O75874 414 aaKnown RBP18.37■□□□□ 0.53
LDLR-204ENST00000545707 SLC3A2P08195 630 aaKnown RBP18.37■□□□□ 0.53
LDLR-204ENST00000545707 AXDND1Q5T1B0 1012 aaPredicted RBP18.37■□□□□ 0.53
LDLR-204ENST00000545707 ANO1Q5XXA6 986 aa18.37■□□□□ 0.53
LDLR-204ENST00000545707 PAXBP1Q9Y5B6 917 aa18.37■□□□□ 0.53
LDLR-204ENST00000545707 MYH15Q9Y2K3 1946 aa18.36■□□□□ 0.53
LDLR-204ENST00000545707 PFKFB1P16118 471 aa18.36■□□□□ 0.53
LDLR-204ENST00000545707 PTPN14Q15678 1187 aa18.36■□□□□ 0.53
LDLR-204ENST00000545707 NUP188Q5SRE5 1749 aa18.36■□□□□ 0.53
LDLR-204ENST00000545707 MROH7-TTC4A0A0A0MT08 1334 aa18.36■□□□□ 0.53
LDLR-204ENST00000545707 YEATS4O95619 227 aa18.35■□□□□ 0.53
LDLR-204ENST00000545707 PCCAP05165 728 aaPredicted RBP18.35■□□□□ 0.53
LDLR-204ENST00000545707 ITGA6P23229 1130 aa18.35■□□□□ 0.53
LDLR-204ENST00000545707 TICAM2Q86XR7 235 aa18.35■□□□□ 0.53
LDLR-204ENST00000545707 MYL10Q9BUA6 226 aa18.35■□□□□ 0.53
LDLR-204ENST00000545707 PIH1D3Q9NQM4 214 aaKnown RBP18.35■□□□□ 0.53
LDLR-204ENST00000545707 RIPOR2Q9Y4F9 1068 aa18.35■□□□□ 0.53
LDLR-204ENST00000545707 CSF1RP07333 972 aa18.35■□□□□ 0.53
LDLR-204ENST00000545707 ZSCAN20P17040 1043 aaPredicted RBP18.35■□□□□ 0.53
LDLR-204ENST00000545707 NKX1-1Q15270 411 aaPredicted RBP18.35■□□□□ 0.53
LDLR-204ENST00000545707 ABCC6O95255 1503 aa18.35■□□□□ 0.53
LDLR-204ENST00000545707 B4E1Z4 1266 aa18.34■□□□□ 0.53
LDLR-204ENST00000545707 CDC27P30260 824 aa18.34■□□□□ 0.53
LDLR-204ENST00000545707 NYAP1Q6ZVC0 841 aa18.34■□□□□ 0.53
LDLR-204ENST00000545707 TMC6Q7Z403 805 aa18.34■□□□□ 0.53
LDLR-204ENST00000545707 MICU3Q86XE3 530 aa18.34■□□□□ 0.53
LDLR-204ENST00000545707 ZBTB38Q8NAP3 1195 aaPredicted RBP18.34■□□□□ 0.53
LDLR-204ENST00000545707 ALG1Q9BT22 464 aa18.34■□□□□ 0.53
LDLR-204ENST00000545707 CNNM1Q9NRU3 951 aa18.34■□□□□ 0.53
LDLR-204ENST00000545707 TMOD3Q9NYL9 352 aa18.34■□□□□ 0.53
LDLR-204ENST00000545707 NEMFO60524 1076 aa18.34■□□□□ 0.53
LDLR-204ENST00000545707 LMOD1P29536 600 aaPredicted RBP18.34■□□□□ 0.53
LDLR-204ENST00000545707 PTPN21Q16825 1174 aa18.34■□□□□ 0.53
LDLR-204ENST00000545707 KIF6Q6ZMV9 814 aa18.34■□□□□ 0.53
LDLR-204ENST00000545707 BRINP3Q76B58 766 aa18.34■□□□□ 0.53
LDLR-204ENST00000545707 BRAPQ7Z569 592 aa18.34■□□□□ 0.53
LDLR-204ENST00000545707 CCAR2Q8N163 923 aaKnown RBP18.34■□□□□ 0.53
LDLR-204ENST00000545707 HELBQ8NG08 1087 aaPredicted RBP18.34■□□□□ 0.53
LDLR-204ENST00000545707 CHMP4CQ96CF2 233 aa18.34■□□□□ 0.53
LDLR-204ENST00000545707 ADD2P35612 726 aa18.33■□□□□ 0.53
LDLR-204ENST00000545707 TRDNQ13061 729 aa18.33■□□□□ 0.53
LDLR-204ENST00000545707 TTLL11Q8NHH1 800 aa18.33■□□□□ 0.53
LDLR-204ENST00000545707 ZNF215Q9UL58 517 aaPredicted RBP18.33■□□□□ 0.53
LDLR-204ENST00000545707 SNAP23O00161 211 aa18.33■□□□□ 0.52
LDLR-204ENST00000545707 ATP1A3P13637 1013 aa18.33■□□□□ 0.52
LDLR-204ENST00000545707 METAP2P50579 478 aaKnown RBP eCLIP18.33■□□□□ 0.525e-7■□□□□ 8.9
LDLR-204ENST00000545707 ARMCX5Q6P1M9 558 aa18.33■□□□□ 0.52
LDLR-204ENST00000545707 CLIC6Q96NY7 704 aa18.33■□□□□ 0.52
LDLR-204ENST00000545707 ANGEL1Q9UNK9 670 aaKnown RBP18.33■□□□□ 0.52
LDLR-204ENST00000545707 IGSF3O75054 1194 aa18.32■□□□□ 0.52
LDLR-204ENST00000545707 PHKA1P46020 1223 aa18.32■□□□□ 0.52
LDLR-204ENST00000545707 NCAPHQ15003 741 aa18.32■□□□□ 0.52
LDLR-204ENST00000545707 RIC1Q4ADV7 1423 aa18.32■□□□□ 0.52
LDLR-204ENST00000545707 KRT40Q6A162 431 aa18.32■□□□□ 0.52
LDLR-204ENST00000545707 VPS37DQ86XT2 251 aa18.32■□□□□ 0.52
LDLR-204ENST00000545707 PIGBQ92521 554 aa18.32■□□□□ 0.52
LDLR-204ENST00000545707 WWC3Q9ULE0 1092 aa18.32■□□□□ 0.52
LDLR-204ENST00000545707 ZNF532Q9HCE3 1301 aa18.32■□□□□ 0.52
LDLR-204ENST00000545707 NLRP12P59046 1061 aa18.32■□□□□ 0.52
LDLR-204ENST00000545707 TRIM28Q13263 835 aaKnown RBP18.32■□□□□ 0.52
LDLR-204ENST00000545707 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.32■□□□□ 0.522e-9■■□□□ 12.3
LDLR-204ENST00000545707 ZHX1Q9UKY1 873 aaPredicted RBP18.32■□□□□ 0.52
LDLR-204ENST00000545707 CMA1P23946 247 aa18.31■□□□□ 0.52
LDLR-204ENST00000545707 EVA1CP58658 441 aa18.31■□□□□ 0.52
LDLR-204ENST00000545707 SLC39A14Q15043 492 aa18.31■□□□□ 0.52
LDLR-204ENST00000545707 NPHP1O15259 732 aa18.31■□□□□ 0.52
LDLR-204ENST00000545707 GNL2Q13823 731 aaKnown RBP18.31■□□□□ 0.52
LDLR-204ENST00000545707 APOA5Q6Q788 366 aa18.31■□□□□ 0.52
LDLR-204ENST00000545707 SHC4Q6S5L8 630 aa18.31■□□□□ 0.52
LDLR-204ENST00000545707 NLRP10Q86W26 655 aa18.31■□□□□ 0.52
LDLR-204ENST00000545707 STK11IPQ8N1F8 1099 aa18.31■□□□□ 0.52
LDLR-204ENST00000545707 FBXO3Q9UK99 471 aa18.31■□□□□ 0.52
LDLR-204ENST00000545707 SH2B2O14492 632 aaPredicted RBP18.3■□□□□ 0.52
LDLR-204ENST00000545707 SYKP43405 635 aa18.3■□□□□ 0.52
LDLR-204ENST00000545707 PNOCQ13519 176 aa18.3■□□□□ 0.52
LDLR-204ENST00000545707 E4F1Q66K89 784 aaPredicted RBP18.3■□□□□ 0.52
LDLR-204ENST00000545707 PLA2G12BQ9BX93 195 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms