RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 GOLGA6CA6NDK9 693 aa16.18■□□□□ 0.18
LIMS1-215ENST00000544547 GOLGA8AA7E2F4 631 aa16.18■□□□□ 0.18
LIMS1-215ENST00000544547 GOLGA6DP0CG33 693 aa16.18■□□□□ 0.18
LIMS1-215ENST00000544547 METAP2P50579 478 aaKnown RBP eCLIP16.18■□□□□ 0.186e-8■■■■■ 30.3
LIMS1-215ENST00000544547 CDK5RAP3Q96JB5 506 aa16.18■□□□□ 0.18
LIMS1-215ENST00000544547 FANCLQ9NW38 375 aa16.18■□□□□ 0.18
LIMS1-215ENST00000544547 GOLGA6AQ9NYA3 693 aa16.18■□□□□ 0.18
LIMS1-215ENST00000544547 PCDHA7Q9UN72 937 aa16.18■□□□□ 0.18
LIMS1-215ENST00000544547 BRD3Q15059 726 aa16.18■□□□□ 0.18
LIMS1-215ENST00000544547 ZFYVE27Q5T4F4 411 aa16.18■□□□□ 0.18
LIMS1-215ENST00000544547 TTC19Q6DKK2 380 aaPredicted RBP16.18■□□□□ 0.18
LIMS1-215ENST00000544547 ATP1A3P13637 1013 aa16.18■□□□□ 0.18
LIMS1-215ENST00000544547 PNOCQ13519 176 aa16.18■□□□□ 0.18
LIMS1-215ENST00000544547 FAM204AQ9H8W3 233 aa16.18■□□□□ 0.18
LIMS1-215ENST00000544547 FBXO18Q8NFZ0 1043 aa16.17■□□□□ 0.18
LIMS1-215ENST00000544547 ZNF526Q8TF50 670 aaPredicted RBP16.17■□□□□ 0.18
LIMS1-215ENST00000544547 DHX58Q96C10 678 aa16.17■□□□□ 0.18
LIMS1-215ENST00000544547 ZBTB3Q9H5J0 574 aa16.17■□□□□ 0.18
LIMS1-215ENST00000544547 STAP2Q9UGK3 403 aa16.17■□□□□ 0.18
LIMS1-215ENST00000544547 CCT5P48643 541 aa16.17■□□□□ 0.18
LIMS1-215ENST00000544547 LINS1Q8NG48 757 aa16.17■□□□□ 0.18
LIMS1-215ENST00000544547 ANKRD24Q8TF21 1146 aa16.17■□□□□ 0.18
LIMS1-215ENST00000544547 EXOC4Q96A65 974 aa16.17■□□□□ 0.18
LIMS1-215ENST00000544547 UBAC1Q9BSL1 405 aa16.17■□□□□ 0.18
LIMS1-215ENST00000544547 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.17■□□□□ 0.18
LIMS1-215ENST00000544547 CHD1O14646 1710 aa16.17■□□□□ 0.18
LIMS1-215ENST00000544547 ANKRD13DQ6ZTN6 518 aa16.17■□□□□ 0.18
LIMS1-215ENST00000544547 RGS22Q8NE09 1264 aa16.17■□□□□ 0.18
LIMS1-215ENST00000544547 CCDC114Q96M63 670 aa16.17■□□□□ 0.18
LIMS1-215ENST00000544547 NAPGQ99747 312 aaPredicted RBP16.17■□□□□ 0.18
LIMS1-215ENST00000544547 CCDC113Q9H0I3 377 aa16.17■□□□□ 0.18
LIMS1-215ENST00000544547 AOX1Q06278 1338 aa16.17■□□□□ 0.18
LIMS1-215ENST00000544547 RBM6P78332 1123 aaKnown RBP16.17■□□□□ 0.18
LIMS1-215ENST00000544547 RABGGTAQ92696 567 aa16.17■□□□□ 0.18
LIMS1-215ENST00000544547 SEC62Q99442 399 aaKnown RBP16.17■□□□□ 0.18
LIMS1-215ENST00000544547 SLFNL1Q499Z3 407 aa16.16■□□□□ 0.18
LIMS1-215ENST00000544547 ANO1Q5XXA6 986 aa16.16■□□□□ 0.18
LIMS1-215ENST00000544547 ALDH1L1O75891 902 aa16.16■□□□□ 0.18
LIMS1-215ENST00000544547 NAA25Q14CX7 972 aa16.16■□□□□ 0.18
LIMS1-215ENST00000544547 CAPN7Q9Y6W3 813 aa16.16■□□□□ 0.18
LIMS1-215ENST00000544547 TULP4Q9NRJ4 1543 aa16.16■□□□□ 0.18
LIMS1-215ENST00000544547 PNPLA6Q8IY17 1366 aa16.16■□□□□ 0.18
LIMS1-215ENST00000544547 ATP6V1AP38606 617 aa16.16■□□□□ 0.18
LIMS1-215ENST00000544547 SF3A3Q12874 501 aaKnown RBP eCLIP16.16■□□□□ 0.18
LIMS1-215ENST00000544547 ZNF827Q17R98 1081 aa16.16■□□□□ 0.18
LIMS1-215ENST00000544547 PRC1O43663 620 aa16.15■□□□□ 0.18
LIMS1-215ENST00000544547 KCNA6P17658 529 aa16.15■□□□□ 0.18
LIMS1-215ENST00000544547 NBPF6Q5VWK0 638 aa16.15■□□□□ 0.18
LIMS1-215ENST00000544547 CC2D1AQ6P1N0 951 aaPredicted RBP16.15■□□□□ 0.18
LIMS1-215ENST00000544547 AEBP2Q6ZN18 517 aaPredicted RBP16.15■□□□□ 0.18
LIMS1-215ENST00000544547 BCAS4Q8TDM0 211 aa16.15■□□□□ 0.18
LIMS1-215ENST00000544547 NBPF4Q96M43 638 aa16.15■□□□□ 0.18
LIMS1-215ENST00000544547 IQGAP1P46940 1657 aa16.15■□□□□ 0.18
LIMS1-215ENST00000544547 IFIT3O14879 490 aaKnown RBP16.15■□□□□ 0.18
LIMS1-215ENST00000544547 RRAGBQ5VZM2 374 aa16.15■□□□□ 0.18
LIMS1-215ENST00000544547 LMBR1LQ6UX01 489 aa16.15■□□□□ 0.18
LIMS1-215ENST00000544547 SLC12A7Q9Y666 1083 aa16.15■□□□□ 0.18
LIMS1-215ENST00000544547 KRT18P05783 430 aaKnown RBP16.15■□□□□ 0.18
LIMS1-215ENST00000544547 VPS16Q9H269 839 aa16.15■□□□□ 0.18
LIMS1-215ENST00000544547 CEP131Q9UPN4 1083 aa16.15■□□□□ 0.18
LIMS1-215ENST00000544547 SBNO1A3KN83 1393 aa16.15■□□□□ 0.18
LIMS1-215ENST00000544547 ZMYND10O75800 440 aa16.14■□□□□ 0.17
LIMS1-215ENST00000544547 TRIM21P19474 475 aaKnown RBP16.14■□□□□ 0.17
LIMS1-215ENST00000544547 LTKP29376 864 aa16.14■□□□□ 0.17
LIMS1-215ENST00000544547 SSRP1Q08945 709 aaKnown RBP16.14■□□□□ 0.17
LIMS1-215ENST00000544547 TFCP2Q12800 502 aa16.14■□□□□ 0.17
LIMS1-215ENST00000544547 ADALQ6DHV7 355 aa16.14■□□□□ 0.17
LIMS1-215ENST00000544547 SUCLG2Q96I99 432 aa16.14■□□□□ 0.17
LIMS1-215ENST00000544547 SLF1Q9BQI6 1058 aa16.14■□□□□ 0.17
LIMS1-215ENST00000544547 LRRC7Q96NW7 1537 aa16.14■□□□□ 0.17
LIMS1-215ENST00000544547 USO1O60763 962 aaKnown RBP16.14■□□□□ 0.17
LIMS1-215ENST00000544547 CCDC96Q2M329 555 aa16.14■□□□□ 0.17
LIMS1-215ENST00000544547 AKAP4Q5JQC9 854 aa16.14■□□□□ 0.17
LIMS1-215ENST00000544547 CCDC122Q5T0U0 273 aa16.14■□□□□ 0.17
LIMS1-215ENST00000544547 NFATC2IPQ8NCF5 419 aa16.14■□□□□ 0.17
LIMS1-215ENST00000544547 NCOA7Q8NI08 942 aa16.14■□□□□ 0.17
LIMS1-215ENST00000544547 CTCFLQ8NI51 663 aaPredicted RBP16.14■□□□□ 0.17
LIMS1-215ENST00000544547 EIF3CLB5ME19 914 aaKnown RBP16.14■□□□□ 0.17
LIMS1-215ENST00000544547 PFKFB1P16118 471 aa16.14■□□□□ 0.17
LIMS1-215ENST00000544547 CKAP4Q07065 602 aaKnown RBP16.14■□□□□ 0.17
LIMS1-215ENST00000544547 SPECC1LQ69YQ0 1117 aa16.14■□□□□ 0.17
LIMS1-215ENST00000544547 GPIHBP1Q8IV16 184 aa16.14■□□□□ 0.17
LIMS1-215ENST00000544547 IFT81Q8WYA0 676 aa16.14■□□□□ 0.17
LIMS1-215ENST00000544547 PSMB7Q99436 277 aa16.14■□□□□ 0.17
LIMS1-215ENST00000544547 EIF3CQ99613 913 aaKnown RBP16.14■□□□□ 0.17
LIMS1-215ENST00000544547 AATKQ6ZMQ8 1374 aa16.14■□□□□ 0.17
LIMS1-215ENST00000544547 OPA1O60313 960 aa16.13■□□□□ 0.17
LIMS1-215ENST00000544547 EZRP15311 586 aaKnown RBP16.13■□□□□ 0.17
LIMS1-215ENST00000544547 EIF4A1P60842 406 aaKnown RBP16.13■□□□□ 0.17
LIMS1-215ENST00000544547 IL25Q9H293 177 aa16.13■□□□□ 0.17
LIMS1-215ENST00000544547 ABCF2Q9UG63 623 aa16.13■□□□□ 0.17
LIMS1-215ENST00000544547 KCNH3Q9ULD8 1083 aa16.13■□□□□ 0.17
LIMS1-215ENST00000544547 RPAP1Q9BWH6 1393 aaPredicted RBP16.13■□□□□ 0.17
LIMS1-215ENST00000544547 PLEKHG3A1L390 1219 aa16.13■□□□□ 0.17
LIMS1-215ENST00000544547 MACROD2A1Z1Q3 448 aa16.13■□□□□ 0.17
LIMS1-215ENST00000544547 TDRD12Q587J7 1177 aaKnown RBP16.13■□□□□ 0.17
LIMS1-215ENST00000544547 EAF2Q96CJ1 260 aaPredicted RBP16.13■□□□□ 0.17
LIMS1-215ENST00000544547 GLI2P10070 1586 aa16.13■□□□□ 0.17
LIMS1-215ENST00000544547 ATP8B1O43520 1251 aa16.13■□□□□ 0.17
LIMS1-215ENST00000544547 ATL3Q6DD88 541 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms