RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 MSL3P1P0C860 447 aa10.16□□□□□ -0.78
VPS13D-212ENST00000543766 PDE3AQ14432 1141 aa10.16□□□□□ -0.78
VPS13D-212ENST00000543766 IQCA1Q86XH1 822 aa10.16□□□□□ -0.78
VPS13D-212ENST00000543766 SH3GL1Q99961 368 aa10.16□□□□□ -0.78
VPS13D-212ENST00000543766 INCENPQ9NQS7 918 aa10.16□□□□□ -0.78
VPS13D-212ENST00000543766 CLNS1AP54105 237 aaKnown RBP10.16□□□□□ -0.78
VPS13D-212ENST00000543766 PPM1EQ8WY54 764 aa10.16□□□□□ -0.78
VPS13D-212ENST00000543766 STK31Q9BXU1 1019 aa10.16□□□□□ -0.78
VPS13D-212ENST00000543766 LRRCC1Q9C099 1032 aa10.16□□□□□ -0.78
VPS13D-212ENST00000543766 BICC1Q9H694 974 aaKnown RBP10.16□□□□□ -0.78
VPS13D-212ENST00000543766 PPP1R9AQ9ULJ8 1098 aa10.16□□□□□ -0.78
VPS13D-212ENST00000543766 INMTO95050 263 aa10.16□□□□□ -0.78
VPS13D-212ENST00000543766 HSPA1AP0DMV8 641 aaKnown RBP10.16□□□□□ -0.78
VPS13D-212ENST00000543766 HSPA1BP0DMV9 641 aaKnown RBP10.16□□□□□ -0.78
VPS13D-212ENST00000543766 MRPL28Q13084 256 aaKnown RBP10.16□□□□□ -0.78
VPS13D-212ENST00000543766 CAPN12Q6ZSI9 719 aa10.16□□□□□ -0.78
VPS13D-212ENST00000543766 ZNF483Q8TF39 744 aaPredicted RBP10.16□□□□□ -0.78
VPS13D-212ENST00000543766 FAXDC2Q96IV6 333 aa10.16□□□□□ -0.78
VPS13D-212ENST00000543766 KMT5AQ9NQR1 393 aa10.16□□□□□ -0.78
VPS13D-212ENST00000543766 TMA7Q9Y2S6 64 aaKnown RBP10.16□□□□□ -0.78
VPS13D-212ENST00000543766 ANKRD65E5RJM6 399 aa10.15□□□□□ -0.78
VPS13D-212ENST00000543766 F8VZ95 297 aa10.15□□□□□ -0.78
VPS13D-212ENST00000543766 SLC27A2O14975 620 aa10.15□□□□□ -0.78
VPS13D-212ENST00000543766 MTA2O94776 668 aa10.15□□□□□ -0.78
VPS13D-212ENST00000543766 HOXD11P31277 338 aaPredicted RBP10.15□□□□□ -0.78
VPS13D-212ENST00000543766 IMMTQ16891 758 aaKnown RBP10.15□□□□□ -0.78
VPS13D-212ENST00000543766 LRRC23Q53EV4 343 aaPredicted RBP10.15□□□□□ -0.78
VPS13D-212ENST00000543766 CCDC93Q567U6 631 aa10.15□□□□□ -0.78
VPS13D-212ENST00000543766 ANKRD7Q92527 254 aa10.15□□□□□ -0.78
VPS13D-212ENST00000543766 ZFYVE16Q7Z3T8 1539 aa10.15□□□□□ -0.78
VPS13D-212ENST00000543766 NEURL4Q96JN8 1562 aa10.15□□□□□ -0.78
VPS13D-212ENST00000543766 INPP5BP32019 993 aa10.15□□□□□ -0.78
VPS13D-212ENST00000543766 PIK3CAP42336 1068 aa10.15□□□□□ -0.78
VPS13D-212ENST00000543766 SNX16P57768 344 aa10.15□□□□□ -0.78
VPS13D-212ENST00000543766 GOLGA2Q08379 1002 aa10.15□□□□□ -0.78
VPS13D-212ENST00000543766 PEX5LQ8IYB4 626 aa10.15□□□□□ -0.78
VPS13D-212ENST00000543766 FAM9CQ8IZT9 166 aa10.15□□□□□ -0.78
VPS13D-212ENST00000543766 ZFPM2Q8WW38 1151 aa10.15□□□□□ -0.78
VPS13D-212ENST00000543766 SPACA7Q96KW9 195 aa10.15□□□□□ -0.78
VPS13D-212ENST00000543766 ABCF3Q9NUQ8 709 aa10.15□□□□□ -0.78
VPS13D-212ENST00000543766 NPC1L1Q9UHC9 1359 aa10.15□□□□□ -0.78
VPS13D-212ENST00000543766 CEP104O60308 925 aa10.15□□□□□ -0.79
VPS13D-212ENST00000543766 C7orf57Q8NEG2 295 aa10.15□□□□□ -0.79
VPS13D-212ENST00000543766 GSDMBQ8TAX9 411 aa10.15□□□□□ -0.79
VPS13D-212ENST00000543766 STRCQ7RTU9 1775 aa10.14□□□□□ -0.79
VPS13D-212ENST00000543766 PRDM15P57071 1507 aaPredicted RBP10.14□□□□□ -0.79
VPS13D-212ENST00000543766 SPATA21Q7Z572 469 aa10.14□□□□□ -0.79
VPS13D-212ENST00000543766 IL17RAQ96F46 866 aa10.14□□□□□ -0.79
VPS13D-212ENST00000543766 RPAP3Q9H6T3 665 aaPredicted RBP10.14□□□□□ -0.79
VPS13D-212ENST00000543766 GPCPD1Q9NPB8 672 aa10.14□□□□□ -0.79
VPS13D-212ENST00000543766 YEATS2Q9ULM3 1422 aa10.14□□□□□ -0.79
VPS13D-212ENST00000543766 ELF1P32519 619 aa10.14□□□□□ -0.79
VPS13D-212ENST00000543766 RABEP1Q15276 862 aa10.14□□□□□ -0.79
VPS13D-212ENST00000543766 SHQ1Q6PI26 577 aaKnown RBP10.14□□□□□ -0.79
VPS13D-212ENST00000543766 RBSNQ9H1K0 784 aa10.14□□□□□ -0.79
VPS13D-212ENST00000543766 IGSF5Q9NSI5 407 aa10.14□□□□□ -0.79
VPS13D-212ENST00000543766 A0A1B0GUA9 196 aa10.14□□□□□ -0.79
VPS13D-212ENST00000543766 GOLGA6L10A6NI86 522 aa10.14□□□□□ -0.79
VPS13D-212ENST00000543766 FOSP01100 380 aaPredicted RBP10.14□□□□□ -0.79
VPS13D-212ENST00000543766 BRD3Q15059 726 aa10.14□□□□□ -0.79
VPS13D-212ENST00000543766 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.14□□□□□ -0.793e-9■■□□□ 12.6
VPS13D-212ENST00000543766 SPAG9O60271 1321 aaKnown RBP10.14□□□□□ -0.79
VPS13D-212ENST00000543766 RNF17Q9BXT8 1623 aaKnown RBP10.13□□□□□ -0.79
VPS13D-212ENST00000543766 PREX1Q8TCU6 1659 aa10.13□□□□□ -0.79
VPS13D-212ENST00000543766 RASA4BC9J798 803 aa10.13□□□□□ -0.79
VPS13D-212ENST00000543766 ITIH3Q06033 890 aa10.13□□□□□ -0.79
VPS13D-212ENST00000543766 COL19A1Q14993 1142 aa10.13□□□□□ -0.79
VPS13D-212ENST00000543766 GNPTABQ3T906 1256 aa10.13□□□□□ -0.79
VPS13D-212ENST00000543766 HSP90AA5PQ58FG0 334 aa10.13□□□□□ -0.79
VPS13D-212ENST00000543766 NAA16Q6N069 864 aaPredicted RBP10.13□□□□□ -0.79
VPS13D-212ENST00000543766 LEKR1Q6ZMV7 388 aa10.13□□□□□ -0.79
VPS13D-212ENST00000543766 KIAA1958Q8N8K9 716 aa10.13□□□□□ -0.79
VPS13D-212ENST00000543766 MIPOL1Q8TD10 442 aa10.13□□□□□ -0.79
VPS13D-212ENST00000543766 EZH1Q92800 747 aaPredicted RBP10.13□□□□□ -0.79
VPS13D-212ENST00000543766 ZNF512BQ96KM6 892 aaPredicted RBP10.13□□□□□ -0.79
VPS13D-212ENST00000543766 DMGDHQ9UI17 866 aaKnown RBP10.13□□□□□ -0.79
VPS13D-212ENST00000543766 MAPK8IP1Q9UQF2 711 aa10.13□□□□□ -0.79
VPS13D-212ENST00000543766 TRIM17Q9Y577 477 aa10.13□□□□□ -0.79
VPS13D-212ENST00000543766 AGLP35573 1532 aa10.13□□□□□ -0.79
VPS13D-212ENST00000543766 GIGYF1O75420 1035 aaPredicted RBP10.13□□□□□ -0.79
VPS13D-212ENST00000543766 LNPKQ9C0E8 428 aa10.13□□□□□ -0.79
VPS13D-212ENST00000543766 CCDC68Q9H2F9 335 aa10.13□□□□□ -0.79
VPS13D-212ENST00000543766 SSX2IPQ9Y2D8 614 aa10.13□□□□□ -0.79
VPS13D-212ENST00000543766 VWDEQ8N2E2 1590 aa10.13□□□□□ -0.79
VPS13D-212ENST00000543766 TBCAO75347 108 aaKnown RBP10.13□□□□□ -0.79
VPS13D-212ENST00000543766 RBP3P10745 1247 aa10.13□□□□□ -0.79
VPS13D-212ENST00000543766 CCDC144BQ3MJ40 725 aa10.13□□□□□ -0.79
VPS13D-212ENST00000543766 SIX5Q8N196 739 aa10.13□□□□□ -0.79
VPS13D-212ENST00000543766 TNIP2Q8NFZ5 429 aa10.13□□□□□ -0.79
VPS13D-212ENST00000543766 GPR101Q96P66 508 aaPredicted RBP10.13□□□□□ -0.79
VPS13D-212ENST00000543766 ZNF304Q9HCX3 659 aa10.13□□□□□ -0.79
VPS13D-212ENST00000543766 TMEM98Q9Y2Y6 226 aa10.13□□□□□ -0.79
VPS13D-212ENST00000543766 RABGAP1Q9Y3P9 1069 aa10.13□□□□□ -0.79
VPS13D-212ENST00000543766 ZSCAN9O15535 394 aaPredicted RBP10.12□□□□□ -0.79
VPS13D-212ENST00000543766 DESP17661 470 aa10.12□□□□□ -0.79
VPS13D-212ENST00000543766 CDC25CP30307 473 aa10.12□□□□□ -0.79
VPS13D-212ENST00000543766 KRT72Q14CN4 511 aa10.12□□□□□ -0.79
VPS13D-212ENST00000543766 RBM12BQ8IXT5 1001 aaKnown RBP10.12□□□□□ -0.79
VPS13D-212ENST00000543766 LARGE2Q8N3Y3 721 aa10.12□□□□□ -0.79
VPS13D-212ENST00000543766 KCNB2Q92953 911 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms