RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 TRPM4Q8TD43 1214 aa15.27■□□□□ 0.04
VPS33A-207ENST00000542790 MYOZ2Q9NPC6 264 aa15.27■□□□□ 0.04
VPS33A-207ENST00000542790 PGAP2Q9UHJ9 254 aa15.27■□□□□ 0.04
VPS33A-207ENST00000542790 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.27■□□□□ 0.04
VPS33A-207ENST00000542790 PHKA1P46020 1223 aa15.26■□□□□ 0.03
VPS33A-207ENST00000542790 KIF4BQ2VIQ3 1234 aa15.26■□□□□ 0.03
VPS33A-207ENST00000542790 TNNI3KQ59H18 835 aa15.26■□□□□ 0.03
VPS33A-207ENST00000542790 MAP1SQ66K74 1059 aaPredicted RBP15.26■□□□□ 0.03
VPS33A-207ENST00000542790 LHX8Q68G74 356 aa15.26■□□□□ 0.03
VPS33A-207ENST00000542790 CNTROBQ8N137 903 aa15.26■□□□□ 0.03
VPS33A-207ENST00000542790 WDR66Q8TBY9 1149 aa15.26■□□□□ 0.03
VPS33A-207ENST00000542790 RHPN1Q8TCX5 695 aa15.26■□□□□ 0.03
VPS33A-207ENST00000542790 METRNQ9UJH8 293 aa15.26■□□□□ 0.03
VPS33A-207ENST00000542790 DENND2AQ9ULE3 1009 aa15.26■□□□□ 0.03
VPS33A-207ENST00000542790 FPGT-TNNI3KV9GXZ4 949 aa15.26■□□□□ 0.03
VPS33A-207ENST00000542790 SCN4AP35499 1836 aa15.26■□□□□ 0.03
VPS33A-207ENST00000542790 EGFRP00533 1210 aa15.25■□□□□ 0.03
VPS33A-207ENST00000542790 RNF25Q96BH1 459 aaPredicted RBP15.25■□□□□ 0.03
VPS33A-207ENST00000542790 KIF1BPQ96EK5 621 aa15.25■□□□□ 0.03
VPS33A-207ENST00000542790 F8W031 263 aaPredicted RBP15.24■□□□□ 0.03
VPS33A-207ENST00000542790 SCARF1Q14162 830 aa15.24■□□□□ 0.03
VPS33A-207ENST00000542790 CCDC158Q5M9N0 1113 aa15.24■□□□□ 0.03
VPS33A-207ENST00000542790 SLC39A7Q92504 469 aa15.24■□□□□ 0.03
VPS33A-207ENST00000542790 SUGT1Q9Y2Z0 365 aa15.24■□□□□ 0.03
VPS33A-207ENST00000542790 PCDHB15Q9Y5E8 787 aa15.24■□□□□ 0.03
VPS33A-207ENST00000542790 POTEB2H3BUK9 544 aa15.23■□□□□ 0.03
VPS33A-207ENST00000542790 APBB1O00213 710 aa15.23■□□□□ 0.03
VPS33A-207ENST00000542790 ITGBL1O95965 494 aaPredicted RBP15.23■□□□□ 0.03
VPS33A-207ENST00000542790 UQCRFS1P1P0C7P4 283 aa15.23■□□□□ 0.03
VPS33A-207ENST00000542790 HSPA6P17066 643 aa15.23■□□□□ 0.03
VPS33A-207ENST00000542790 CDC37L1Q7L3B6 337 aa15.23■□□□□ 0.03
VPS33A-207ENST00000542790 CLASRPQ8N2M8 674 aaKnown RBP15.23■□□□□ 0.03
VPS33A-207ENST00000542790 DCPSQ96C86 337 aaKnown RBP15.23■□□□□ 0.03
VPS33A-207ENST00000542790 EAF2Q96CJ1 260 aaPredicted RBP15.23■□□□□ 0.03
VPS33A-207ENST00000542790 TTF2Q9UNY4 1162 aaKnown RBP15.23■□□□□ 0.03
VPS33A-207ENST00000542790 PDS5AQ29RF7 1337 aaKnown RBP15.22■□□□□ 0.03
VPS33A-207ENST00000542790 A0A1B0GUL6 1792 aa15.22■□□□□ 0.03
VPS33A-207ENST00000542790 C7P10643 843 aa15.22■□□□□ 0.03
VPS33A-207ENST00000542790 DLGAP5Q15398 846 aa15.22■□□□□ 0.03
VPS33A-207ENST00000542790 AACSQ86V21 672 aa15.22■□□□□ 0.03
VPS33A-207ENST00000542790 ZGPATQ8N5A5 531 aaKnown RBP15.22■□□□□ 0.03
VPS33A-207ENST00000542790 MTMR14Q8NCE2 650 aa15.22■□□□□ 0.03
VPS33A-207ENST00000542790 DBNDD2Q9BQY9 259 aa15.22■□□□□ 0.03
VPS33A-207ENST00000542790 DCTPP1Q9H773 170 aa15.22■□□□□ 0.03
VPS33A-207ENST00000542790 SERPINA10Q9UK55 444 aa15.22■□□□□ 0.03
VPS33A-207ENST00000542790 SCN9AQ15858 1988 aa15.22■□□□□ 0.03
VPS33A-207ENST00000542790 SALL1Q9NSC2 1324 aa15.21■□□□□ 0.03
VPS33A-207ENST00000542790 POTEFA5A3E0 1075 aa15.21■□□□□ 0.03
VPS33A-207ENST00000542790 WNT10BO00744 389 aa15.21■□□□□ 0.03
VPS33A-207ENST00000542790 ARID4AP29374 1257 aaPredicted RBP15.21■□□□□ 0.03
VPS33A-207ENST00000542790 PSEN1P49768 467 aa15.21■□□□□ 0.03
VPS33A-207ENST00000542790 RBM5P52756 815 aaKnown RBP eCLIP15.21■□□□□ 0.03
VPS33A-207ENST00000542790 HDLBPQ00341 1268 aaKnown RBP15.21■□□□□ 0.03
VPS33A-207ENST00000542790 RASGRF1Q13972 1273 aa15.21■□□□□ 0.03
VPS33A-207ENST00000542790 NBPF9Q3BBW0 867 aa15.21■□□□□ 0.03
VPS33A-207ENST00000542790 TTC39AQ5SRH9 613 aa15.21■□□□□ 0.03
VPS33A-207ENST00000542790 ZNF512BQ96KM6 892 aaPredicted RBP15.21■□□□□ 0.03
VPS33A-207ENST00000542790 MRIQ9BWK5 157 aa15.21■□□□□ 0.03
VPS33A-207ENST00000542790 LRRCC1Q9C099 1032 aa15.21■□□□□ 0.03
VPS33A-207ENST00000542790 CCDC8Q9H0W5 538 aaPredicted RBP15.21■□□□□ 0.03
VPS33A-207ENST00000542790 IL1RAPL2Q9NP60 686 aa15.21■□□□□ 0.03
VPS33A-207ENST00000542790 DBNLQ9UJU6 430 aaKnown RBP15.21■□□□□ 0.03
VPS33A-207ENST00000542790 MAST3O60307 1309 aa15.2■□□□□ 0.02
VPS33A-207ENST00000542790 MYO1BO43795 1136 aa15.2■□□□□ 0.02
VPS33A-207ENST00000542790 IFIT2P09913 472 aaKnown RBP15.2■□□□□ 0.02
VPS33A-207ENST00000542790 APLP1P51693 650 aa15.2■□□□□ 0.02
VPS33A-207ENST00000542790 GRIK5Q16478 980 aa15.2■□□□□ 0.02
VPS33A-207ENST00000542790 CFAP100Q494V2 611 aa15.2■□□□□ 0.02
VPS33A-207ENST00000542790 ANGEL2Q5VTE6 544 aaKnown RBP15.2■□□□□ 0.02
VPS33A-207ENST00000542790 SULF1Q8IWU6 871 aa15.2■□□□□ 0.02
VPS33A-207ENST00000542790 SPATA5Q8NB90 893 aa15.2■□□□□ 0.02
VPS33A-207ENST00000542790 EXOC6Q8TAG9 804 aa15.2■□□□□ 0.02
VPS33A-207ENST00000542790 ZBED3Q96IU2 234 aaPredicted RBP15.2■□□□□ 0.02
VPS33A-207ENST00000542790 GGA3Q9NZ52 723 aa15.2■□□□□ 0.02
VPS33A-207ENST00000542790 HMG20BQ9P0W2 317 aa15.2■□□□□ 0.02
VPS33A-207ENST00000542790 PASKQ96RG2 1323 aa15.19■□□□□ 0.02
VPS33A-207ENST00000542790 LDHBP07195 334 aaKnown RBP15.19■□□□□ 0.02
VPS33A-207ENST00000542790 SPTY2D1Q68D10 685 aaPredicted RBP15.19■□□□□ 0.02
VPS33A-207ENST00000542790 KRT26Q7Z3Y9 468 aa15.19■□□□□ 0.02
VPS33A-207ENST00000542790 USP48Q86UV5 1035 aa15.19■□□□□ 0.02
VPS33A-207ENST00000542790 TEKT1Q969V4 418 aa15.19■□□□□ 0.02
VPS33A-207ENST00000542790 GLIS2Q9BZE0 524 aaPredicted RBP15.19■□□□□ 0.02
VPS33A-207ENST00000542790 TLR7Q9NYK1 1049 aaKnown RBP15.19■□□□□ 0.02
VPS33A-207ENST00000542790 PITPNM2Q9BZ72 1349 aa15.18■□□□□ 0.02
VPS33A-207ENST00000542790 MCAMP43121 646 aa15.18■□□□□ 0.02
VPS33A-207ENST00000542790 CRKP46108 304 aa15.18■□□□□ 0.02
VPS33A-207ENST00000542790 HDAC1Q13547 482 aaPredicted RBP15.18■□□□□ 0.02
VPS33A-207ENST00000542790 PRMT6Q96LA8 375 aaPredicted RBP15.18■□□□□ 0.02
VPS33A-207ENST00000542790 ABCF2Q9UG63 623 aa15.18■□□□□ 0.02
VPS33A-207ENST00000542790 COL1A1P02452 1464 aaPredicted RBP15.18■□□□□ 0.02
VPS33A-207ENST00000542790 ASTN2O75129 1339 aaPredicted RBP15.17■□□□□ 0.02
VPS33A-207ENST00000542790 ADAMTSL1Q8N6G6 1762 aa15.17■□□□□ 0.02
VPS33A-207ENST00000542790 TRAF5O00463 557 aa15.17■□□□□ 0.02
VPS33A-207ENST00000542790 HHIPL2Q6UWX4 724 aa15.17■□□□□ 0.02
VPS33A-207ENST00000542790 BCL11AQ9H165 835 aa15.17■□□□□ 0.02
VPS33A-207ENST00000542790 RWDD1Q9H446 243 aaPredicted RBP15.17■□□□□ 0.02
VPS33A-207ENST00000542790 PRDX5P30044 214 aa15.16■□□□□ 0.02
VPS33A-207ENST00000542790 PDAP1Q13442 181 aaKnown RBP15.16■□□□□ 0.02
VPS33A-207ENST00000542790 PI16Q6UXB8 463 aa15.16■□□□□ 0.02
VPS33A-207ENST00000542790 ERICH6Q7L0X2 663 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms